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Geometrical optimization of the overlap in mixed adhesive lap joints
, Article Journal of Adhesion ; Volume 89, Issue 12 , 2013 , Pages 948-972 ; 00218464 (ISSN) ; Bavi, N ; Shishesaz, M ; Sharif University of Technology
2013
Abstract
The aim of this research is to optimize the geometry of the overlap in mixed adhesive single-and double-lap joints using a modified version of Bees and Genetic Algorithms (BA and GA). Accounting for adherends Poisson's ratio in the deduced equilibrium equations, the proposed shear lag model gives a more accurate approximation of joint failure load in comparison with Volkersen's solution. The objective functions used in this work are used separately to maximize the load bearing capacity f and the specific strength (f/w) of the joint. This procedure is applied to optimize aeronautical adhesively bonded assemblies, while taking manufacturing constraints into account. The employed constraints...
Mechanical properties of ester- and ether-DPhPC bilayers: A molecular dynamics study
, Article Journal of the Mechanical Behavior of Biomedical Materials ; Volume 117 , 2021 ; 17516161 (ISSN) ; Jamali, Y ; Tajkhorshid, E ; Bavi, O ; Pishkenari, H. N ; Sharif University of Technology
Elsevier Ltd
2021
Abstract
In addition to its biological importance, DPhPC lipid bilayers are widely used in droplet bilayers, study of integral membrane proteins, drug delivery systems as well as patch-clamp electrophysiology of ion channels, yet their mechanical properties are not fully measured. Herein, we examined the effect of the ether linkage on the mechanical properties of ester- and ether-DPhPC lipid bilayers using all-atom molecular dynamics simulation. The values of area per lipid, thickness, intrinsic lateral pressure profile, order parameter, and elasticity moduli were estimated using various computational frameworks and were compared with available experimental values. Overall, a good agreement was...
Biophysical implications of lipid bilayer rheometry for mechanosensitive channels
, Article Proceedings of the National Academy of Sciences of the United States of America ; Vol. 111, Issue. 38 , 2014 , Pages 13864-13869 ; Nakayama, Y ; Bavi, O ; Cox, C. D ; Qin, Q. H ; Martinac, B ; Sharif University of Technology
2014
Abstract
The lipid bilayer plays a crucial role in gating of mechanosensitive (MS) channels. Hence it is imperative to elucidate the rheological properties of lipid membranes. Herein we introduce a framework to characterize the mechanical properties of lipid bilayers by combining micropipette aspiration (MA) with theoretical modeling. Our results reveal that excised liposome patch fluorometry is superior to traditional cell-attached MA for measuring the intrinsic mechanical properties of lipid bilayers. The computational results also indicate that unlike the uniform bilayer tension estimated by Laplace's law, bilayer tension is not uniform across the membrane patch area. Instead, the highest tension...
The effect of local bending on gating of MscL using a representative volume element and finite element simulation
, Article Channels ; Vol. 8, issue. 4 , 2014 , p. 344-349 ; Vossoughi, M ; Naghdabadi, R ; Jamali, Y ; Sharif University of Technology
2014
Abstract
Many physiological processes such as cell division, endocytosis and exocytosis cause severe local curvature of the cell membrane. Local curvature has been shown experimentally to modulate numerous mechanosensitive (MS) ion channels. In order to quantify the effects of local curvature we introduced a coarse grain representative volume element for the bacterial mechanosensitive ion channel of large conductance (MscL) using continuum elasticity. Our model is designed to be consistent with the channel conformation in the closed and open states to capture its major continuum rheological behavior in response to the local membrane curvature. Herein we show that change in the local curvature of the...
The combined effect of hydrophobic mismatch and bilayer local bending on the regulation of mechanosensitive ion channels
, Article PLoS ONE ; Volume 11, Issue 3 , 2016 ; 19326203 (ISSN) ; Vossoughi, M ; Naghdabadi, R ; Jamali, Y ; Sharif University of Technology
Public Library of Science
2016
Abstract
The hydrophobic mismatch between the lipid bilayer and integral membrane proteins has well-defined effect on mechanosensitive (MS) ion channels. Also, membrane local bending is suggested to modulate MS channel activity. Although a number of studies have already shown the significance of each individual factor, the combined effect of these physical factors on MS channel activity have not been investigated. Here using finite element simulation, we study the combined effect of hydrophobic mismatch and local bending on the archetypal mechanosensitive channel MscL. First we show how the local curvature direction impacts on MS channel modulation. In the case of MscL, we show inward (cytoplasmic)...
Inorganic nanomaterials for chemo/photothermal therapy: a promising horizon on effective cancer treatment
, Article Biophysical Reviews ; Volume 11, Issue 3 , 2019 , Pages 335-352 ; 18672450 (ISSN) ; Zamani, M ; Golizadeh, M ; Bavi, O ; Sharif University of Technology
Springer Verlag
2019
Abstract
During the last few decades, nanotechnology has established many essential applications in the biomedical field and in particular for cancer therapy. Not only can nanodelivery systems address the shortcomings of conventional chemotherapy such as limited stability, non-specific biodistribution and targeting, poor water solubility, low therapeutic indices, and severe toxic side effects, but some of them can also provide simultaneous combination of therapies and diagnostics. Among the various therapies, the combination of chemo- and photothermal therapy (CT-PTT) has demonstrated synergistic therapeutic efficacies with minimal side effects in several preclinical studies. In this regard,...
Mechanical behavior Analysis of Cancerous Cells in the Micropipette Aspiration Using Finite Element Simulations
, M.Sc. Thesis Sharif University of Technology ; Naghdabadi, Reza (Supervisor) ; Bavi, Omid (Co-Supervisor)
Abstract
Diseases such as cancer lead to extensive conversion in the biological structure of cells. These conversions can overshadow cell function. The dynamics of a cell directly depends on how it interacts with other cells and the extracellular environment. Most of these interactions are associated with the occurrence of mechanical phenomena and are due to forces that the cell has experienced. Cell mechanics manifests itself in the Mechanotransduction, the ability of a cell to sense and respond to external forces. Cancer alters the mechanical properties of the components of the cytoskeleton. Understanding the biomechanical behavior of cells and cytoskeleton can play an important role in early...
Investigation of Activation Mechanism of Mechanosensitive Nano Ion Channels
, Ph.D. Dissertation Sharif University of Technology ; Vosoughi, Manochehr (Supervisor) ; Jamali, Yusef (Supervisor) ; Naghdabadi, Reza (Supervisor)
Abstract
Mechanosensitive (MS) channels are ubiquitous molecular force sensors that respond to a number of different mechanical stimuli including tensile, compressive and shear stress. One of the main mechanisms to functionally study these channels is the patch clamp technique. Here we use continuum mechanics to probe the question of how curvature, in a standard patch clamp experiment, at different length scales (global and local) affects a model MS channel. Firstly, to increase the accuracy of the Laplace’s equation in tension estimation in a patch membrane and to be able to more precisely describe the transient phenomena happening during patch clamping, we propose a modified Laplace’s equation. In...
The role of mscl amphipathic n terminus indicates a blueprint for bilayer-mediated gating of mechanosensitive channels
, Article Nature Communications ; Volume 7 , 2016 ; 20411723 (ISSN) ; Cortes, D. M ; Cox, C. D ; Rohde, P. R ; Liu, W ; Deitmer, J. W ; Bavi, O ; Strop, P ; Hill, A. P ; Rees, D ; Corry, B ; Perozo, E ; Martinac, B ; Sharif University of Technology
Nature Publishing Group
2016
Abstract
The bacterial mechanosensitive channel MscL gates in response to membrane tension as a result of mechanical force transmitted directly to the channel from the lipid bilayer. MscL represents an excellent model system to study the basic biophysical principles of mechanosensory transduction. However, understanding of the essential structural components that transduce bilayer tension into channel gating remains incomplete. Here using multiple experimental and computational approaches, we demonstrate that the amphipathic N-terminal helix of MscL acts as a crucial structural element during tension-induced gating, both stabilizing the closed state and coupling the channel to the membrane. We...
Recent advances in the design and applications of amyloid-β peptide aggregation inhibitors for Alzheimer’s disease therapy
, Article Biophysical Reviews ; Volume 11, Issue 6 , 2019 , Pages 901-925 ; 18672450 (ISSN) ; Khazaei, S ; Behnammanesh, H ; Shamloo, A ; Erfani, M ; Beiki, D ; Bavi, O ; Sharif University of Technology
Springer
2019
Abstract
Alzheimer’s disease (AD) is an irreversible neurological disorder that progresses gradually and can cause severe cognitive and behavioral impairments. This disease is currently considered a social and economic incurable issue due to its complicated and multifactorial characteristics. Despite decades of extensive research, we still lack definitive AD diagnostic and effective therapeutic tools. Consequently, one of the most challenging subjects in modern medicine is the need for the development of new strategies for the treatment of AD. A large body of evidence indicates that amyloid-β (Aβ) peptide fibrillation plays a key role in the onset and progression of AD. Recent studies have reported...
Nanomechanical properties of MscL α helices: A steered molecular dynamics study
, Article Channels ; Volume 11, Issue 3 , 2017 , Pages 209-223 ; 19336950 (ISSN) ; Bavi, O ; Vossoughi, M ; Naghdabadi, R ; Hill, A. P ; Martinac, B ; Jamali, Y ; Sharif University of Technology
Taylor and Francis Inc
2017
Abstract
Gating of mechanosensitive (MS) channels is driven by a hierarchical cascade of movements and deformations of transmembrane helices in response to bilayer tension. Determining the intrinsic mechanical properties of the individual transmembrane helices is therefore central to understanding the intricacies of the gating mechanism of MS channels. We used a constant-force steered molecular dynamics (SMD) approach to perform unidirectional pulling tests on all the helices of MscL in M. tuberculosis and E. coli homologs. Using this method, we could overcome the issues encountered with the commonly used constant-velocity SMD simulations, such as low mechanical stability of the helix during...
Design of peptide-based inhibitor agent against amyloid-β aggregation: Molecular docking, synthesis and in vitro evaluation
, Article Bioorganic Chemistry ; Volume 102 , September , 2020 ; Erfani, M ; Bavi, O ; Khazaei, S ; Sharifzadeh, M ; Hajiramezanali, M ; Beiki, D ; Shamloo, A ; Sharif University of Technology
Academic Press Inc
2020
Abstract
Formation of the amyloid beta (Aβ) peptide aggregations represents an indispensable role in appearing and progression of Alzheimer disease. β-sheet breaker peptides can be designed and modified with different amino acids in order to improve biological properties and binding affinity to the amyloid beta peptide. In the present study, three peptide sequences were designed based on the hopeful results of LIAIMA peptide and molecular docking studies were carried out onto the monomer and fibril structure of amyloid beta peptide using AutoDock Vina software. According to the obtained interactions and binding energy from docking, the best-designed peptide (D-GABA-FPLIAIMA) was chosen and...
Recent activities in science and technology and the progress of women in physics in the last three years in Iran
, Article AIP Conference Proceedings, Stellenbosch ; Volume 1517 , 2013 , Pages 108-109 ; 0094243X (ISSN); 9780735411388 (ISBN) ; Azad, M. T ; Mahmoudi, N ; Izadipanah, N ; Eshghi, N ; Sharif University of Technology
2013
Abstract
For the 4th IUPAP International Conference of Women in Physics, we report on activities in science and engineering in Iran, and conditions for women in physics, in the three years since the 3rd IUPAP International Conference of Women in Physics was held in 2008. Iran has made prominent advancements and astonishing progress in laser technology, biotechnology, nanotechnology, genetics, computer software and hardware, and robotics. Iranian scientists have been very productive in several experimental fields, such as pharmaceutical, organic, and polymer chemistry. Conditions for women in physics have improved greatly in recent years. A project to improve the environment for learning physics, and...
Lead-free MAGeI3 as a suitable alternative for MAPbI3 in nanostructured perovskite solar cells: a simulation study
, Article Environmental Science and Pollution Research ; Volume 30, Issue 19 , 2023 , Pages 57032-57040 ; 09441344 (ISSN) ; Akhavan, O ; Rabiee, N ; Afshar, E. N ; Zare, E. N ; Sharif University of Technology
Springer Science and Business Media Deutschland GmbH
2023
Abstract
The lead is a heavy metal with hazardous impacts on environment and human life. Lead-free perovskite solar cells have attracted much attention in recent years, due to eco-friendly characteristics. Meanwhile, Pb-containing cells showed the highest efficiencies among the various types of cells. Hence, designing novel Pb-free solar cells with comparable or better performance than the Pb-containing ones is highly required. In this work, a lead-free methyl-ammonium-germanium-iodide (MAGeI3)-based perovskite solar cell with ITO/TiO2/MAGeI3/Spiro-OMeTAD/Ag multilayer nanostructure has been proposed and its main characteristics including open-circuit voltage (VOC) and power conversion efficiency (η)...
Ab initio study of electronic effects in the ZnO/TiO2 core/shell interface: Application in dye sensitized solar cells
, Article RSC Advances ; Vol. 4, issue. 1 , April , 2014 , p. 301-307 ; Nafari, N ; Taghavinia, N ; Sharif University of Technology
2014
Abstract
Core/shell structure of ZnO nanowires coated with a monolayer of TiO 2 is investigated using Density Functional Theory (DFT). The electronic states of the semiconductor is calculated and compared before and after coating of the TiO2 monolayer on a ZnO [101 0] surface. The effect of TiO2 coating induce surface states changes and shifts the conduction and valence band edges to higher energies. Our results, in qualitative agreement with the experimental work of Matt Law et al. (J. Phys. Chem. B, 110, 22652), show an increase in open circuit voltage and a decrease in short circuit current in ZnO/TiO2 core shell dye sensitized solar cells. Regarding the semiconductor density of states (DOS), TiO2...
Analyzing factors effective on the development of relationship commitment
, Article Proceedings of the 2012 International Conference on Artificial Intelligence, ICAI 2012, 16 July 2012 through 19 July 2012 ; Volume 1 , July , 2012 , Pages 398-404 ; 1601322186 (ISBN) ; 9781601322180 (ISBN) ; Lotfi, N ; Karami, N ; Sharif University of Technology
2012
Abstract
Due to the important role of commitment and trust in the relationship marketing, the factors which can directly result in a committed relationship along with the factors which can influence the commitment through influencing trust, according to the model of commitment and trust by (Morgan & Hunt, 1994) have been introduced and their level of importance has been investigated here. The article uses fuzzy cognitive maps (FCMs) in the proposed model to find the most important paths leading to relationship commitment. The FCM analyzes the responses of a group of 30 people including general practitioners in dentistry, managers of dental departments in some of the public clinics and hospitals who...
Morphological dependence of light backscattering from metallic back reflector films: Application in dye-sensitized solar cells
, Article Physica Status Solidi (A) Applications and Materials Science ; Volume 212, Issue 4 , January , 2015 , Pages 785-790 ; 18626300 (ISSN) ; Ghazyani, N ; Taghavinia, N ; Sharif University of Technology
Wiley-VCH Verlag
2015
Abstract
Conventionally, a film of TiO2 particles of 300 nm size is employed in Dye-sensitized solar cells (DSCs) as the back reflector film to enhance the light harvesting. Perfect reflectance of silver in visible and near infrared motivates to investigate its potential as the material for the light back reflector film in DSCs. In this study, light back reflector films consisting of 300 nm-sized silver particles, as well as vacuum evaporated silver flat film, were fabricated and compared to 300 nm-sized rutile-type TiO2 particulate reflector film to study their optical aspects. Conventional TiO2 rutile-type particulate film demonstrates slightly lower performance...
Monolithic dye sensitized solar cell with metal foil counter electrode
, Article Organic Electronics ; Volume 57 , June , 2018 , Pages 194-200 ; 15661199 (ISSN) ; Taghavinia, N ; Ghazyani, N ; Sharif University of Technology
Elsevier B.V
2018
Abstract
Monolithic dye-sensitized solar cells are conventionally fabricated using carbon composite layer as the counter electrode. In the current research, the brittle carbon composite layer is replaced with a metal foil, aiming to decrease the device series resistance and using less catalyst material in counter electrode. This metallic structure has also an advantage of mechanical strength and decreases the fabrication complexity. The counter electrode is prepared by electrodepositing Cr film followed by electrodepositing Pt nanoparticles on a metal foil. As the porous spacer layer, different composite layers of SiO2, TiO2, and Al2O3 are investigated and the best results are obtained for TiO2...
A compact versatile microbial fuel cell from paper
, Article ASME 2013 11th Int. Conf. on Fuel Cell Science, Eng. and Technology Collocated with the ASME 2013 Heat Transfer Summer Conf. and the ASME 2013 7th Int. Conf. on Energy Sustainability, FUELCELL 2013 ; 2013 ; 9780791855522 (ISBN) ; Hashemi, N ; Hashemi, N ; Sharif University of Technology
2013
Abstract
Microbial fuel cells (MFCs) have been a potential green energy source for a long time but one of the problems is that either the technology must be used on a large scale or special equipment have been necessary to keep the fuel cells running such as syringe pumps. Paper-based microbial fuel cells do not need to have a syringe pump to run and can run entirely by themselves when placed in contact with the fluids that are necessary for it to run. Paper-based microbial fuel cells are also more compact than traditional MFCs since the device doesn't need any external equipment to run. The goal of this paper is to develop a microbial fuel cell that does not require a syringe pump to function. This...
Decentralized model predictive voltage control of islanded DC microgrids
, Article 11th Power Electronics, Drive Systems, and Technologies Conference, PEDSTC 2020, 4 February 2020 through 6 February 2020 ; 2020 ; Mahdian Dehkordi, N ; Sadati, N ; Sharif University of Technology
Institute of Electrical and Electronics Engineers Inc
2020
Abstract
This paper proposes a novel decentralized control approach for islanded direct-current (DC) microgrids (MGs) based on model predictive control (MPC) to regulate the distributed generation unit (DGU) output voltages, i.e. the voltages of the point of common coupling (PCC). A local controller is designed for each DGU, in the presence of uncertainties, disturbances, and unmodeled dynamics. First, a discrete-time state-space model of an MG is derived. Afterward, an MPC algorithm is designed to perform the PCC voltage control. The proposed MPC scheme ensures that the PCC voltages remain within an acceptable range. Several simulation studies have been conducted to illustrate the effectiveness of...