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    Online undersampled dynamic MRI reconstruction using mutual information

    , Article 2014 21st Iranian Conference on Biomedical Engineering, ICBME 2014 ; 17 February , 2014 , Pages 241-245 ; ISBN: 9781479974177 Farzi, M ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    Abstract
    We propose an algorithm based on mutual information to address the problem of online reconstruction of dynamic MRI from partial k-space measurements. Most of previous compressed sensing (CS) based methods successfully leverage sparsity constraint for offline reconstruction of MR images, yet they are not used in online applications due to their complexities. In this paper, we formulate the reconstruction as a constraint optimization problem and try to maximize the mutual information between the current and the previous time frames. Conjugate gradient method is used to solve the optimization problem. Using Cartesian mask to undersample k-space measurements, the proposed method reduces... 

    MRI image reconstruction via new K-space sampling scheme based on separable transform

    , Article Iranian Conference on Machine Vision and Image Processing, MVIP ; September , 2013 , Pages 127-130 ; 21666776 (ISSN) ; 9781467361842 (ISBN) Oliaiee, A ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    IEEE Computer Society  2013
    Abstract
    Reducing the time required for MRI, has taken a lot of attention since its inventions. Compressed sensing (CS) is a relatively new method used a lot to reduce the required time. Usage of ordinary compressed sensing in MRI imaging needs conversion of 2D MRI signal (image) to 1D signal by some techniques. This conversion of the signal from 2D to 1D results in heavy computational burden. In this paper, based on separable transforms, a method is proposed which enables the usage of CS in MRI directly in 2D case. By means of this method, imaging can be done faster and with less computational burden  

    Nonrigid registration of breast MR images using residual complexity similarity measure

    , Article Iranian Conference on Machine Vision and Image Processing, MVIP, Zanjan ; Sept , 2013 , Pages 241-244 ; 21666776 (ISSN); 9781467361842 (ISBN) Nekoo, A. H ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    IEEE Computer Society  2013
    Abstract
    Elimination of motion artifact in breast MR images is a significant issue in pre-processing step before utilizing images for diagnostic applications. Breast MR Images are affected by slow varying intensity distortions as a result of contrast agent enhancement. Thus a nonrigid registration algorithm considering this effect is needed. Traditional similarity measures such as sum of squared differences and cross correlation, ignore the mentioned distortion. Therefore, efficient registration is not obtained. Residual complexity is a similarity measure that considers spatially varying intensity distortions by maximizing sparseness of the residual image. In this research, the results obtained by... 

    Mammogram image retrieval via sparse representation

    , Article 2011 1st Middle East Conference on Biomedical Engineering, MECBME 2011, Sharjah, 21 February 2011 through 24 February 2011 ; 2011 , Pages 63-66 ; 9781424470006 (ISBN) Siyahjani, F ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    2011
    Abstract
    In recent years there has been a great effort to enhance the computer-aided diagnosis systems, since proven similar pathologies, in the past, plays an important role in diagnosis of the current cases, content based medical image retrieval has been emerged. In this work we have designed a decision making machine in which utilizes sparse representation technique to preserve semantic category relevance among the retrieved images and the query image, this machine comprises optimized wavelets (adapted using lifting scheme) to extract appropriate visual features in order to grasp visual content of the images, afterwards by using some classical methods, Raw data vectors become applicable for sparse... 

    GMWASC: Graph matching with weighted affine and sparse constraints

    , Article CSSE 2015 - 20th International Symposium on Computer Science and Software Engineering, 18 August 2015 ; 2015 ; 9781467391818 (ISBN) Taheri Dezaki , F ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2015
    Abstract
    Graph Matching (GM) plays an essential role in computer vision and machine learning. The ability of using pairwise agreement in GM makes it a powerful approach in feature matching. In this paper, a new formulation is proposed which is more robust when it faces with outlier points. We add weights to the one-to-one constraints, and modify them in the process of optimization in order to diminish the effect of outlier points in the matching procedure. We execute our proposed method on different real and synthetic databases to show both robustness and accuracy in contrast to several conventional GM methods  

    The performance comparison of improved continuous mixed P-norm and other adaptive algorithms in sparse system identification

    , Article International Journal of Advanced Intelligence Paradigms ; 2020 , Pages 65-74 ; Volume 16, Issue 1 Akhbari, A ; Ghaffari, A ; Sharif University of Technology
    Inderscience Publishers  2020
    Abstract
    One of the essential usages of adaptive filters is in sparse system identification on which the performance of classic adaptive filters is not acceptable. There are several algorithms that designed especially for sparse systems; we call them sparsity aware algorithms. In this paper we studied the performance of two newly presented adaptive algorithms in which P-norm constraint is considered in defining cost function. The general title of these algorithms is continuous mixed P-norm (CMPN). The performances of these algorithms are considered for the first time in sparse system identification. Also the performance of l0 norm LMS algorithm is analysed and compared with our proposed algorithms.... 

    Robust registration of medical images in the presence of spatially-varying noise

    , Article Algorithms ; Volume 15, Issue 2 , 2022 ; 19994893 (ISSN) Abbasi Asl, R ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    MDPI  2022
    Abstract
    Spatially-varying intensity noise is a common source of distortion in medical images and is often associated with reduced accuracy in medical image registration. In this paper, we propose two multi-resolution image registration algorithms based on Empirical Mode Decomposition (EMD) that are robust against additive spatially-varying noise. EMD is a multi-resolution tool that decomposes a signal into several principle patterns and residual components. Our first proposed algorithm (LR-EMD) is based on the registration of EMD feature maps from both floating and reference images in various resolutions. In the second algorithm (AFR-EMD), we first extract a single average feature map based on EMD... 

    Effective partitioning of input domains for ALM algorithm

    , Article 1st Iranian Conference on Pattern Recognition and Image Analysis ; 2013 ; 9781467362047 (ISBN) Afrakoti, I. E. P ; Ghaffari, A ; Shouraki, S. B ; Sharif University of Technology
    2013
    Abstract
    This paper presents a new and simple algorithm for partitioning the input domain for implementation of Active Learning Method (ALM) algorithm. ALM is a pattern-based algorithm for soft computing which uses the Ink Drop Spread (IDS) algorithm as its main engine for feature extraction. In this paper a simple algorithm is introduced with a few computation cost. In order to evaluate the performance of the proposed algorithm, it is applied to two applications, system modeling and pattern recognition. Simulation results show the effectiveness of our algorithm in specifying the appropriate points for dividing the inputs domains  

    A novel inference algorithm for active Learning method

    , Article 1st Iranian Conference on Pattern Recognition and Image Analysis ; 2013 ; 9781467362047 (ISBN) Afrakoti, I. E. P ; Shouraki, S. B ; Ghaffari, A ; Sharif University of Technology
    2013
    Abstract
    This paper presents a new inference algorithm for Active Learning Method (ALM). ALM is a pattern-based algorithm for soft computing which uses the Ink Drop Spread (IDS) algorithm as its main engine for feature extraction. In this paper a fuzzy number is extracted from each IDS plane rather than the narrow path and spread as in previous approaches. In order to compare performance of the proposed algorithm with the original one, two functions which are widely used in literature are modeled as the benchmark. Simulation results show that the proposed algorithm is as effective as previous one in the modeling task  

    Face recognition using the combination of weighted sparse representation-based classification and singular value decomposition face

    , Article Indian Journal of Pharmaceutical Sciences ; Volume 82 , 2020 , Pages 91-97 Khosravi, H ; Vahidi, J ; Ghaffari, A ; Motameni, H ; Sharif University of Technology
    Indian Pharmaceutical Association  2020
    Abstract
    Given the increasing need for the creation and development of automated systems, the problem of detecting and identifying the faces of people in the images has been considered by the researchers. In recent years, the sparse representation based classification has been of great interest to researchers. The goal of this investigation is to provide a quick and effective way to identify faces based on the sparse representation. Since the basis of sparse representation is to calculate it through L1-norm optimization for high dimensional dictionary with high computational volume, a smoothed L0-norm optimization-based method was introduced. At the time of obtaining the sparse representation using... 

    O2DSS: A framework for ontology-based decision support systems in pervasive computing environment

    , Article 2nd Asia International Conference on Modelling and Simulation, AMS 2008, Kuala Lumpur, 13 May 2008 through 15 May 2008 ; 2008 , Pages 41-45 ; 9780769531366 (ISBN) Saremi, A ; Esmaeili, M ; Habibi, J ; Ghaffari, A ; Sharif University of Technology
    2008
    Abstract
    Applications in pervasive computing environment exploit information about the context of use, such as the location, tasks and preferences of the user, in order to adapt their behavior in response to changing operating environments and user requirements. Utilizing context with aid of ontology in data and model, decision support systems can provide better and more desirable support to their users. The effects and advantages of exploiting ontology in user modeling and DSS is discussed. We propose a framework of a Ontology-based Decision Support System (O2DSS), including ontology in model base, database and their advantages. © 2008 IEEE  

    Erratum: Discussion on active aeroelastic control of 2-D wing-flap systems operating in an incompressible flowfield and impacted by a blast pulse by Librescu et al., Journal of Sound and Vibration 283 (3-5) (2005) 685-706 (Journal of Sound and Vibration (2013) 332:13 (351-3358))

    , Article Journal of Sound and Vibration ; Vol. 333, Issue. 25 , 2014 , pp. 7084-7087 ; ISSN: 0022460X Mozaffari-Jovin, S ; Firouz-Abadi, R. D ; Roshanian, J ; Ghaffari, A ; Sharif University of Technology
    Abstract
    [No abstract available]  

    Optimal temporal resolution for decoding of visual stimuli in inferior temporal cortex

    , Article 2014 21st Iranian Conference on Biomedical Engineering, ICBME 2014 ; 2014 , pp. 109-112 Babolhavaeji, A ; Karimi, S ; Ghaffari, A ; Hamidinekoo, A ; Vosoughi-Vahdat, B ; Sharif University of Technology
    Abstract
    Inferior temporal (IT) cortex is the most important part of the brain and plays an important role in response to visual stimuli. In this study, object decoding has been performed using neuron spikes in IT cortex region. Single Unit Activity (SUA) was recorded from 123 neurons in IT cortex. Pseudo-population firing rate vectors were created, then dimension reduction was done and an Artificial Neural Network (ANN) was used for object decoding. Object decoding accuracy was calculated for various window lengths from 50 ms to 200 ms and various window steps from 25 ms to 100 ms. The results show that 150 ms length and 50 ms window step size gives an optimum performance in average accuracy  

    Discussion on "active aeroelastic control of 2-D wing-flap systems operating in an incompressible flowfield and impacted by a blast pulse" by Librescu et al., Journal of Sound and Vibration 283 (3-5) (2005) 685-706

    , Article Journal of Sound and Vibration ; Volume 332, Issue 13 , 2013 , Pages 3351-3358 ; 0022460X (ISSN) Mozaffari Jovin, S ; Firouz Abadi, R. D ; Roshanian, J ; Ghaffari, A ; Sharif University of Technology
    2013

    Automatic B-spline image registration using histogram-based landmark extraction

    , Article 2012 IEEE-EMBS Conference on Biomedical Engineering and Sciences, IECBES 2012 ; 2012 , Pages 1004-1008 ; 9781467316668 (ISBN) Ghanbari, A ; Abbasi Asl, R ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    2012
    Abstract
    Recognition and correction of inhomogeneous displacement caused by patient's movement has been recently discussed as an interesting topic in medical image processing. Considering consistency in general structure of the image during distortion, histogram could be employed as a fast implementation method in feature domain. Accordingly, attribute vectors could be defined for each pixel based on spatial features to find corresponding points in two images. Consequently a point-based and non-rigid transformation approach will be designed. A B-spline image registration has been applied to match those pairs with a defined smoothness factor. This algorithm is a step-by-step registration process... 

    Optimal temporal resolution for decoding of visual stimuli in inferior temporal cortex

    , Article 2014 21st Iranian Conference on Biomedical Engineering, ICBME 2014, 26 November 2014 through 28 November 2014 ; November , 2014 , Pages 109-112 ; 9781479974177 (ISBN) Babolhavaeji, A ; Karimi, S ; Ghaffari, A ; Hamidinekoo, A ; Vosoughi Vahdat, B ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2014
    Abstract
    Inferior temporal (IT) cortex is the most important part of the brain and plays an important role in response to visual stimuli. In this study, object decoding has been performed using neuron spikes in IT cortex region. Single Unit Activity (SUA) was recorded from 123 neurons in IT cortex. Pseudo-population firing rate vectors were created, then dimension reduction was done and an Artificial Neural Network (ANN) was used for object decoding. Object decoding accuracy was calculated for various window lengths from 50 ms to 200 ms and various window steps from 25 ms to 100 ms. The results show that 150 ms length and 50 ms window step size gives an optimum performance in average accuracy  

    Medical image registration using sparse coding of image patches

    , Article Computers in Biology and Medicine ; Volume 73 , 2016 , Pages 56-70 ; 00104825 (ISSN) Afzali, M ; Ghaffari, A ; Fatemizadeh, E ; Soltanian Zadeh, H ; Sharif University of Technology
    Elsevier Ltd 
    Abstract
    Image registration is a basic task in medical image processing applications like group analysis and atlas construction. Similarity measure is a critical ingredient of image registration. Intensity distortion of medical images is not considered in most previous similarity measures. Therefore, in the presence of bias field distortions, they do not generate an acceptable registration. In this paper, we propose a sparse based similarity measure for mono-modal images that considers non-stationary intensity and spatially-varying distortions. The main idea behind this measure is that the aligned image is constructed by an analysis dictionary trained using the image patches. For this purpose, we use... 

    Erratum to: Asymptotic analysis of the plane strain state generated by a finite longitudinal shear crack (mechanics of solids, (2019), 54, 4, (614-621), 10.3103/S0025654419040162)

    , Article Mechanics of Solids ; Volume 54, Issue 6 , 2019 , Pages 996- ; 00256544 (ISSN) Shariati, A ; Shamekhi, A. H ; Ghaffari, A ; Gholampour, S ; Motaghed A, K ; Sharif University of Technology]
    Pleiades Publishing  2019
    Abstract
    There was a mistake in the author mane. The right fifth author is “K. Motaghed A.” There was a mistake in the first keyword. The keyword is “Two-wheeled inverted pendulum(TWIP).” The original article can be found online at https://doi.org/10.3103/S0025654419040162. © 2019, Allerton Press, Inc  

    Conceptual design algorithm of a. two-wheeled inverted pendulum mobile robot for educational purposes

    , Article Mechanics of Solids ; Volume 54, Issue 4 , 2019 , Pages 614-621 ; 00256544 (ISSN) Shariati, A ; Shamekhi, A. H ; Ghaffari, A ; Gholampour, S ; Motaghed, A ; Sharif University of Technology
    Pleiades Publishing  2019
    Abstract
    It is a great challenge for the universities to present undergraduate students the fundamental knowledge needed to develop intelligent unstable robots. Due to the inherent instability and nonholonomic constraints, the problem of two-wheeled inverted pendulum (TWIP) mobile robot is appealing and challenging case in control and dynamic systems. In this paper, an approach is presented to introduce undergraduate students of the control engineering, the principle of developing a. TWIP mobile robot. For this purpose, a. conceptual design algorithm for TWIP robots is contributed and based on the algorithm and the design criteria, a. prototype of the robot is constructed. In the construction... 

    A novel formulation of simvastatin nanoemulsion gel for infected wound therapy: In vitro and in vivo assessment

    , Article Journal of Drug Delivery Science and Technology ; Volume 72 , 2022 ; 17732247 (ISSN) Amoozegar, H ; Ghaffari, A ; Keramati, M ; Ahmadi, S ; Dizaji, S ; Moayer, F ; Akbarzadeh, I ; Abazari, M ; razzaghi abyaneh, M ; Bakhshandeh, H ; Sharif University of Technology
    Editions de Sante  2022
    Abstract
    Simvastatin, a well-known antihyperlipidemic drug, has antibacterial activity against a broad range of bacteria, especially Staphylococcus aureus. In present study, a nanoemulsion gel-based formulation containing Simvastatin was developed for infected wound therapy. Therefore, different formulations of Simvastatin nanoemulsion were prepared. Based on droplet size, polydispersity index and zeta potential, the best nanoemulsion formulation containing Simvastatin was selected for development of nanoemulsion gel formulation of drug using carbomer 934 as gelling agent. Thermodynamic stability of Simvastatin nanoemulsion was assessed at different conditions. The in vitro antibacterial activity...