Sharif Digital Repository

The physical characteristics of Pt nanoclusters with different sizes (256-8788 atoms) have been investigated via molecular dynamics simulations. The Pt-Pt radial distribution function, internal energy, heat capacity, enthalpy, entropy of the nanoclusters are calculated at some temperatures. The melting point predicted by the various properties is consistent with each other and shows that the melting temperature increases with the particle size. We have calculated the Gibbs free energy for the Pt bulk and also for its nanoparticle. We have used the thermodynamic integration method to obtain the Gibbs free energy. The total Gibbs free energy is taken as the sum of its central bulk and its... 

In this thesis, the molecular dynamics simulation is used to investigate the melting transition of B-DNA molecule, via of configurational entropy, the fraction of broken hydrogen bonds (f-curve) and hydrogen bonding energy.We have performed molecular dynamics simulation on Drew-Dickerson oligomer with sequence of (CGCGAATTGCGC) at different temperatures, within the range of 280-400 K with the 20 K intervals. The simulation was done in two different mediums (pure water and 1 M NaCl), to see influences of water and salt in stabilizing the DNA molecule. At each temperature, configurational entropy is calculated by the Schlitter’s formula, using the Cartesian coordinate of all atoms. So, in each... 

In this research, a method based on the modified Enskog theory (MET) and some equations of state has been used to calculate the transport properties of some dense fluids. The main limitation to using the MET is the lack of experimental data for the co-volume, b0, that are substituted from the hard sphere (HS) theory, and the zero density transport properties that are substituted from the kinetic theory of gases for the HS in the MET expression, because of the fact that dense fluids behave more and less like a HS fluid. So a quadratic expression for both ηY/(√T ρ) and λY/(ρ√T) (C_(V,m)+ (9/4)R) in terms of Y at high densities (ρ > ρc) for each isotherm is expected, where Y = (T (∂p/∂T))/ρRT... 

A general regularity has been found based on an effective pair potential of Lennard-Jones LJ (12, 6) for both dense nonmetallic and nonionic fluids and solids; namely, (Z-1)V2 linearly varies with respect to ρ2, this equation of state (EoS I) is known as LIR. The other equation of state (EoS II), according to wich the isotherm of (Z-1)V2 is linear in term of 1/ρ, wich gives a good description for the metallic and ionic fluids and solids. This equation of state was suggested based on an effective pair potential of LJ (6, 3). Unexpectedly, solid and liquid Ne indicates a significant deviations from EoS I. Recently, a general equation of state (EoS III) based on an effective near-neighbor pair... 

In this thesis, we use two simple simulation models for ionic liquids, and the efficiency of the Lennard Jones equations and the state equation obtained from this potential were investigated. Then, using these models, the temperature-dependent coefficients were calculated in two equations at different temperatures, and then analytical expressions were reported to them. Given that ion fluid data is reported only in a small range of densities, these data were used to evaluate the equations used, using a model in a wider range of densities. For this purpose, simulation of molecular dynamics simulation data was simulated. In these two models, the relative size of cations and anions is different.... 

Ising model in nano systems are studied, in the presence of a magnetic field. For a one-dimensional(1-D) array of spins interacting via nearest-neighbor and next-nearest-neighbor interactions we calculated the heat capacity , the surface energy, the finite-size free energy, and bulk free energy per site. The heat capacity versus temperature exhibited a common wide peak for systems of any size. A small peak also appears at lower temperatures for small arrays when the ratio of magnetic field- spin interaction energy over the nearest-neighbour spin-spin interaction energy f is within and size. The peak becomes smaller for longer array and eventually vanishes for long arrays, disappearing when... 

Prediction and calculation of shielding tensors of H, C, F and P nuclei of different molecules has been the subject of much research, because these nuclei have the greatest importance in NMR experiments. The optimum wave functions and calculation method were obtained using empirical models and factorial design. Based on preliminary experiences, the following four factors at two levels were selected: electron correlation, triple-ξ valence shell, diffuse function and polarization function. The wave functions for calculating gas phase 1H and 13C chemical shifts of various types of alcohols, amines and simple hydrocarbons were optimized using empirical model. The B3LYP/6-311+G wave function is...