Sharif Digital Repository

The phenomena of surface, interface, and size effects are the determinative factors in the prediction of the mechanical behavior of multiphase nanowires. The interatomic bond lengths and charge density distribution associated with the surface and interface layers of the relaxed configuration of such nanostructures, in the absence of any external loadings, differ from those of the bulk remarkably. Second strain gradient theory due to its competency in capturing the above mentioned effects will be employed to examine the relaxation of carbon-coated silicon nanowire, carbon nanoshell, and silicon nanowire. Using this theory their effective Young's modulus will also be estimated. To this end,... 

Using molecular dynamics, the behavior of nanoparticles during manipulation process is investigated in this paper. The system consists of a tip, cluster and substrate. The focus of the present research is on ultra-fine metallic nanoclusters. The system of concern is made of different transition metals. Two criteria have been proposed for evaluation of success in a pushing process. Such criteria describe the intactness of nanoparticle/substrate pair. The effects of cluster material and manipulation speed on the success of the process are investigated by atomistic simulations. Such qualitative simulation studies can evaluate the level of success of manipulation regarding different working... 

Using molecular dynamics, the behavior of nanoparticles during manipulation process is investigated in this paper. The system consists of a tip, cluster and substrate. The focus of the present research is on ultra-fine metallic nanoclusters. The system of concern is made of different transition metals. Two criteria have been proposed for evaluation of success in a pushing process. Such criteria describe the intactness of nanoparticle/substrate pair. The effects of cluster material and manipulation speed on the success of the process are investigated by atomistic simulations. Such qualitative simulation studies can evaluate the level of success of manipulation regarding different working... 

An effective potential for longitudinal interactions between adjacent protofilaments in a microtubule is introduced. Our proposed interaction potential is a periodic and continuous function of the offset between two protofilaments, which also incorporates the bending energy of protofilaments. This potential produces the results of atomistic simulations. Further, using the potential, a Monte Carlo simulation gives results for the skew angles of observed structures that are in good agreement with experiments. © 2008 The American Physical Society  

The crack growth process in columnar nanocrystalline samples is simulated using the molecular dynamics method. The effects of grain size, grain boundary, crystallographic orientation and crack tip position on the crack growth behavior are investigated. Different sets of samples with mean grain sizes ranging from 4 nm to 14 nm are prepared. Samples with a similar number of grains and identical dimensions are considered for examining the impact of grain boundary and crystallographic orientation. To assess the effect of the grain boundary, no constraint is considered on the position and orientation of grains, while only the grain orientations are changed to examine the effect of... 

Three independent elastic constants C 11, C 12, and C 44 were calculated and compared using available potentials of eight different metals with FCC crystal structure; Gold, Silver, Copper, Nickel, Platinum, Palladium, Aluminum and Lead. In order to calculate the elastic constants, the second derivative of the energy density of each system was calculated with respect to different directions of strains. Each set of the elastic constants of the metals in bulk scale was compared with experimental results, and the average relative error was for each was calculated and compared with other available potentials. Then, using the Voigt-Reuss-Hill method, approximated values for Young and shear moduli... 

This letter discusses the surface-reconstruction-induced self-twisting behavior of Si100 nanobelts and nanowires (NWs) with rectangular cross section. Giving a thorough physical interpretation, we explain the reason behind this phenomenon and present a continuum-based model. It is revealed that these structures can self-assemble into both right- and left-handed helicoids depending on their crystal arrangements. More specifically, for NWs with the same number of layers in each of their cross sections directions, two distinct values of torsion angle are possible for each of right- and left-handed twisted morphologies. In conclusion, four modes of torsion can be observed in Si100 NWs.... 

Material properties and fracture characteristics are among the most prominent parameters that should be considered for a wide range of graphene applications. This article reviews recent advances in theoretical studies on the mechanical properties and fracture behaviors of graphene, focusing on the effect of various simulation models. Most studies investigated single-layer graphene sheets (SLGSs) under uniaxial tensile tests using different common interatomic potentials, particularly AIREBO. Although researchers have examined a similar problem, specifically for pristine graphene, the differences in the reported values are considerable. These discrepancies are most evident in fracture... 

Atomistic simulation was used to study the deformation and fracture mechanisms of Ni-Si interfaces under tensile and shear loads dependent on the crystal structure of interface zone. Modified embedded atom method (MEAM) potential was utilized for molecular dynamics (MD) modeling. The simulation includes analysis of common neighbors, coordination number, least-square atomic local strain, and radial distribution function. The profound effect of interface crystallography on the tensile and shear deformation is shown. The highest tensile strength is obtained for interfaces with high plane density due to lowest atomic disorder while under shear loading planes with low density exhibit a high local... 

The Cauchy-Born hypothesis has been used to concurrently bridge atomistic information to continuum model. It has been a prevalent assumption in computational nano-mechanics during the past decade. This kinematic assumption relates the deformation of the continuum to the deformation of its underlying crystalline structure. The main objective of this paper is to investigate the validity of this hypothesis by means of direct atomistic simulations and the continuum mechanic calculations. In fact, we intend to determine under which strain or stress state the crystalline structure undergoes inhomogeneous deformation due to a small perturbation of the homogeneously deformed system. Two failure... 

Vibrational analysis of single-walled carbon nanotubes (SWCNTs) is performed using a finite element method (FEM). To this end, the vibrational behavior of bridge and cantilever SWCNTs with different side lengths and diameters is modeled by three-dimensional elastic beams and point masses. The beam element elastic properties are calculated by considering mechanical characteristics of the covalent bonds between the carbon atoms in the hexagonal lattice. The mass of each beam element is assumed as point masses at nodes coinciding with the carbon atoms. Implementing the atomistic simulation approach, the natural frequencies of zigzag and armchair SWCNTs are computed. It is observed that the... 

α-Fe with low carbon content is a base material which is commonly used in manufacturing of Reactor Pressure Vessel (RPV) of commercial nuclear power plants. Carbon is generally diffused to α-Fe matrix to improve some of its mechanical properties. The presence of carbon may alter the irradiation response of the steel. In the current study, using molecular dynamics simulations, we have investigated the influence of carbon (∼in either dispersed form or carbon-rich region as chain) in the primary damage states of α-Fe low carbon steels. It is found that carbons in dispersed form have no significant effect on the self-interstitial atoms (SIAs) in α-Fe. While, carbon-rich (C-rich as... 

Binding of the SARS-CoV-2 S-glycoprotein to cell receptors is vital for the entry of the virus into cells and subsequent infection. ACE2 is the main cell receptor for SARS-CoV-2, which can attach to the C-terminal receptor-binding domain (RBD) of the SARS-CoV-2 S-glycoprotein. The GRP78 receptor plays an anchoring role, which attaches to the RBD and increases the chance of other RBDs binding to ACE2. Although high levels of reactive oxygen and nitrogen species (RONS) are produced during viral infections, it is not clear how they affect the RBD structure and its binding to ACE2 and GRP78. In this research, we apply molecular dynamics simulations to study the effect of oxidation of the highly...