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    A hybrid particle swarm optimization and fuzzy rule-based system for breast cancer diagnosis

    , Article International Journal of Soft Computing ; Volume 8, Issue 2 , 2013 , Pages 126-133 ; 18169503 (ISSN) Alikar, N ; Abdullah, S ; Mousavi, S. M ; Akhavan Niaki, S. T ; Sharif University of Technology
    2013
    Abstract
    A hybrid algorithm of a particle swarm optimization and a fuzzy rule-based classification system is proposed in this study to diagnose breast cancer. Two orthogonal and triangular types of fuzzy sets are applied to represent the input variables. In additional, different input membership functions are considered to increase the classification accuracy. The performance of the proposed hybrid algorithm is studied using a classification accuracy measure on the Wisconsin breast cancer dataset. The results of the comparison using different training data sets show the higher performance of the proposed methodology  

    Breast cancer diagnosis and classification in MR-images using multi-stage classifier

    , Article ICBPE 2006 - 2006 International Conference on Biomedical and Pharmaceutical Engineering, Singapore, 11 December 2006 through 14 December 2006 ; 2006 , Pages 84-87 ; 8190426249 (ISBN); 9788190426244 (ISBN) Ardekani, R. D ; Torabi, M ; Fatemizadeh, E ; Sharif University of Technology
    2006
    Abstract
    in this paper we present an integrated classifier that is used in mammogram MR-image for classification of breast cancers and abnormalities using a Multi-stage classifier, the method developed here first classifies mammograms into normal and abnormal and then for abnormal cases determines that if the case cancer is benign or malignant and also determine the type of breast cancer. In this paper there are two main topics that must be considered. First one is selection of good features and second is designing a good structure for classifier. In this study, the features are a combination of some features that are extracted from Spatial Grey Level Dependency matrix and some statistical descriptor... 

    Investigating the Effect of Niosomes Containing Simvastatin on Breast Cancer Cell Line

    , M.Sc. Thesis Sharif University of Technology Akbarzadeh, Iman (Author) ; Yaghmaei, Soheila (Supervisor) ; Bakhshandeh Abkenar, Haleh (Supervisor) ; Ahangari Cohan, Reza (Supervisor)
    Abstract
    Breast cancer is the fifth cause of death from cancer and one of the most common fatal cancers in women. The commonly drugs used to treat cancer often destroy healthy tissues and cells and cause common side effects. It is also necessary to consume a large amount of the drug to achieve a particular effect. One of the applications of nanotechnology is drug delivery. Niosomes are one of the newest drug delivery systems that are nowadays much more widely considered due to better penetration and controlled release. One of the most effective medicines for treating breast cancer is statins. These drugs are a group of lipids lowering drugs that lower the synthesis of cholesterol by inhibiting the... 

    Adsorption and sustained release of doxorubicin from N-carboxymethyl chitosan/polyvinyl alcohol/poly(ε-caprolactone) composite and core-shell nanofibers

    , Article Journal of Drug Delivery Science and Technology ; 2021 ; 17732247 (ISSN) Abasalta, M ; Asefnejad, A ; Khorasani, M. T ; Saadatabadi, A. R ; Irani, M ; Sharif University of Technology
    Editions de Sante  2021
    Abstract
    The core-shell nanofibers, produced by the coaxial electrospinning method, are good candidates for delivery of anticancer drugs due to their continuous release without initial burst release. In this work, the N-carboxymethyl chitosan (N-CMCS)-polyvinyl alcohol (PVA)/poly(ε-caprolactone) (PCL) composite and core-shell nanofibers were prepared by two-nozzle and coaxial electrospinning techniques, respectively. Doxorubicin (DOX) as an anticancer drug was loaded into the N-CMCS/PVA/PCL nanofibers fabricated by two-nozzle and coaxial electrospinning. The performance of nanofibers was compared for the adsorption and controlled release of DOX against MCF-7 breast cancer cells death in vitro. The... 

    Adsorption and sustained release of doxorubicin from N-carboxymethyl chitosan/polyvinyl alcohol/poly(ε-caprolactone) composite and core-shell nanofibers

    , Article Journal of Drug Delivery Science and Technology ; 2021 ; 17732247 (ISSN) Abasalta, M ; Asefnejad, A ; Khorasani, M. T ; Saadatabadi, A. R ; Irani, M ; Sharif University of Technology
    Editions de Sante  2021
    Abstract
    The core-shell nanofibers, produced by the coaxial electrospinning method, are good candidates for delivery of anticancer drugs due to their continuous release without initial burst release. In this work, the N-carboxymethyl chitosan (N-CMCS)-polyvinyl alcohol (PVA)/poly(ε-caprolactone) (PCL) composite and core-shell nanofibers were prepared by two-nozzle and coaxial electrospinning techniques, respectively. Doxorubicin (DOX) as an anticancer drug was loaded into the N-CMCS/PVA/PCL nanofibers fabricated by two-nozzle and coaxial electrospinning. The performance of nanofibers was compared for the adsorption and controlled release of DOX against MCF-7 breast cancer cells death in vitro. The... 

    Benign and malignant breast tumors classification based on region growing and CNN segmentation

    , Article Expert Systems with Applications ; Volume 42, Issue 3 , February , 2014 , Pages 990-1002 ; 09574174 (ISSN) Rouhi, R ; Jafari, M ; Kasaei, S ; Keshavarzian, P ; Sharif University of Technology
    Elsevier Ltd  2014
    Abstract
    Breast cancer is regarded as one of the most frequent mortality causes among women. As early detection of breast cancer increases the survival chance, creation of a system to diagnose suspicious masses in mammograms is important. In this paper, two automated methods are presented to diagnose mass types of benign and malignant in mammograms. In the first proposed method, segmentation is done using an automated region growing whose threshold is obtained by a trained artificial neural network (ANN). In the second proposed method, segmentation is performed by a cellular neural network (CNN) whose parameters are determined by a genetic algorithm (GA). Intensity, textural, and shape features are... 

    The effects of thymus plant extracts on single breast cancer cell morphology in the microfluidic channel

    , Article 2018 IEEE EMBS Conference on Biomedical Engineering and Sciences, IECBES 2018, 3 December 2018 through 6 December 2018 ; 2019 , Pages 647-651 ; 9781538624715 (ISBN) Ahmad, M. R ; Mansor, M. A ; Alsadat Rad, M ; Soo-Beng Khoo, A ; Ahmad, M ; Marzuki, M ; Physiological Measurement; Sarawak Convention Bureau ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2019
    Abstract
    Microfluidics based systems could be useful for drug discovery as they allow for miniaturization and could potentially be run as multiple parallel cell based assays. Such miniaturization allows assays at single cell level and reduces the amount of test material needed, which, in the case of natural product extracts, simplifies the preparation. Thyme species extracts have been reported to show some promising anti-cancer effects. In the present work, we used a microfluidics based system to study the effects of Thymus kotschyanusm Boiss plant extract on two human breast cancer cells lines which are MDA-MB-231 and MCF-7. For better understanding a single cancer cell death mechanism and a flow... 

    Folic acid-functionalized niosomal nanoparticles for selective dual-drug delivery into breast cancer cells: An in-vitro investigation

    , Article Advanced Powder Technology ; Volume 31, Issue 9 , 2020 , Pages 4064-4071 Akbarzadeh, I ; Tavakkoli Yaraki, M ; Ahmadi, S ; Chiani, M ; Nourouzian, D ; Sharif University of Technology
    Elsevier B.V  2020
    Abstract
    In this study, a folic acid-functionalized niosome was formulated and loaded with letrozole and curcumin as a promising drug carrier system for chemotherapy of the breast cancer cells. The formulation process was optimized by varying the type of Span 80 and total lipid to drug ratio, where Span 80 and lipid to drug molar ratio of 10 resulted in the niosomes with maximum encapsulation of both drugs but minimum size. The developed niosomal formulation showed a great storage stability up to one month with the small changes in drug encapsulation efficiency and size during the storage. In addition, they showed a pH-dependent release behaviour with slow drug release at physiological pH (7.4) while... 

    QSAR Study of Chromenes & Carboxamides as Anti-Breast Cancer Drugs

    , M.Sc. Thesis Sharif University of Technology Khoda Bandeloo, Akram (Author) ; Jalaly Heravi, Mahdi (Supervisor)
    Abstract
    Breast Cancer is considered one of the most common cancers among Iranian women. Every year, seven thousands women start suffering from this disease. Since 70 percent of this patients live over 5 years, after this disease starts, there are 70 thousands women who are suffering from the cancer. The average age of getting the disease in Iran is 5 years lower than that of the global level. Studies show that compound containing Chromene and Carboxamides are appropriate candidates for preventing breast cancer. One of the most important fields of researches in Chemistry and Bio-Chemistry is QSAR which is used to relate the structure of molecules to their activities. In this study, molecular... 

    Automatic Classification of Masses in Mammographic Images using Sparse Representation

    , M.Sc. Thesis Sharif University of Technology Zarghami, Ali (Author) ; Manzouri, Mohammad Taghi (Supervisor)
    Abstract
    Computer Aided Diagnosis (CAD) systems are widely used in different medical tasks. Radiology is a branch of medicine which takes advantage of image processing techniques to help radiologists, analyse complicated radiologic images. Among all kind of medical imagingprocedures, utilization of screening mammographyisgetting very popularin detection of breast abnormalities. A typical CAD system for mammogram analysis uses image enhancement and segmentation as pre-processing phase, and feature extraction and classification for detection phase. In this thesis, we have studied different approaches in each level of image processing required in a mammogram mass classification systems, and introduced a... 

    Lesion Classification in Mammography Images

    , M.Sc. Thesis Sharif University of Technology Bagheri Khaligh, Ali (Author) ; Manzuri Shalmani, Mohammad Taghi (Supervisor)
    Abstract
    Computer-Aided Diagnosis (CAD) systems are widely used for detection of various kinds of abnormalities in mammography images. In this work, mass classification is investigated and its steps are explained in detail, for each step a main method is presented and other methods are also discussed. For mass segmentation a relatively new method based on level set and Morphological Component Analysis (MCA) is used.After this step, various kinds of features such as shape, geometrical, and textural ones are introduced. Moreover, a set of proposed features based on wavelet transformation,for this application are presented. The proposed features can describe margin and texture characterizations of a... 

    The Pattern Recognition Methods in Combination with Nuclear Magnetic Resonance (NMR)Spectroscopy in Order to Develop a Metabolomic Approach to Breast Cancer Prognosis

    , M.Sc. Thesis Sharif University of Technology Esmaeili, Pedram (Author) ; Parastar Shahri, Hadi (Supervisor)
    Abstract
    The emerging field of “metabolomics” focuses on investigating into the changes of low-molecular-weight – less than 1500 Daltons – molecules, or metabolites, and it has significantly developed in the field of detecting diseases, particularly cancer in recent years. Regarding the importance of breast cancer (BC), especially among women, developing simple, trusted metabolic approaches are crucial. In the present work, utilizing multivariate class-modelling techniques combined to nuclear magnetic resonance (NMR) in order to predict breast cancer based on analyzing the blood serum of healthy and BC patients is presented. To do so, using 42 blood samples, 18 BC patients and 24 healthy individuals,... 

    Hyperspectral Imaging Combined with Chemometric Techniques for Diagnosis of Breast Cancer

    , M.Sc. Thesis Sharif University of Technology Roshandel, Pegah (Author) ; Parastar Shahri, Hadi (Supervisor)
    Abstract
    Breast cancer is one of the most known types of cancer. About every eight women, one woman will suffer from one of the types of malignant tissues during her life. Diagnosing this type of cancer in the early stages is an important matter and can lead to full recovery. Therefore, one of the challenges in this field is the emergence of a fast method with high sensitivity to diagnose this disease in its early stages. Currently, biopsy is the standard method for breast cancer diagnosis. However, there are some drawbacks to this method. For instance, in order to detect the tumor margin, all breast tissue must be removed, which causes all breast tissue, including healthy tissues, to be removed.... 

    Investigating the Use of Gold Nanoparticle in Increasing Dose of Tumor and Reducing the Dose of Normal Tissue in Brachytherapy

    , M.Sc. Thesis Sharif University of Technology Mahmoodi, Monireh (Author) ; Hosseini, Abolfazl (Supervisor)
    Abstract
    Over the past few decades, brachytherapy has been used as one of the leading methods in the treatment of a wide range of cancers, including breast cancer. Due to the high dose gradient of brachytherapy radiation sources, this method is used to treat such tumors that are grown at the vicinity of sensitive points or tissues of the body. Therefore, as irradiation get started by implanting radiation sources in the desired position, at the same time healthy tissue are also receiving the same dose as tumor tissues do Reducing healthy tissue dose along with increasing the dose of tumor tissue is one of the challenging topics that researchers are always looking for a solution. In the left breast... 

    Another approach to detection of abnormalities in MR-images using support vector machines

    , Article ISPA 2007 - 5th International Symposium on Image and Signal Processing and Analysis, Istanbul, 27 September 2007 through 29 September 2007 ; 2007 , Pages 98-101 ; 9789531841160 (ISBN) Behnamghader, E ; Dehestani Ardekani, R ; Torabi, M ; Fatemizadeh, E ; Sharif University of Technology
    2007
    Abstract
    In this paper we will address two major problems in mammogram analysis for breast cancer in MR-images. The first is classification between normal and abnormal cases and then, discrimination between benign and malignant in cancerous cases. Our proposed method extracts textural and statistical descriptive features that are fed to a learning engine based on the use of Support Vector Machine learning framework to categorize them. The obtained results show excellent accuracy in both classification problems, that proves the appropriate combination of our features and selecting powerful classifier i.e. Support Vector Machine leads us to a brilliant outcome  

    Prognostic Biomarker Selection for Breast Cancer using Bioinformatics and Deep Learning

    , M.Sc. Thesis Sharif University of Technology Salimi , Adel (Author) ; Sharifi Zarchi, Ali (Supervisor)
    Abstract
    Triple Negative Breast Cancer (TNBC) is an invasive subtype of breast cancer. Finding prognostic biomarkers is helpful in choosing the appropriate treatment procedure for patients of this cancer. In recent years, the role of microRNAs in various biological processes, including cancer, has been identified, and their accessibility and stability have made these types of molecules an ideal biomarker. In the first phase of this study, with the aim of overcoming the limitations of previous studies, a new bioinformatics protocol has been proposed to investigate the prognostic miRNAs of triple negative breast cancer. First, using survival analysis, 56 prognostic miRNAs which had a significant... 

    Simulation and Study of Iso-Dose Curve for Asymmetrical Balloon in Balloon-Brachytherapy with Cs-131

    , M.Sc. Thesis Sharif University of Technology Mohebbi Kojidi, Mohammad Hossein (Author) ; Hosseini, Abolfazl (Supervisor) ; Shirmardi, Pejman (Supervisor)
    Abstract
    Incidence of brain metastases (BM) from any tumor varies according to the method of data collection and date reported, ranging from 8 to 14 per 100,000 people per year. According to current population, about 6400 to 11000 BM Patients per year is expected. Without treatment, prognosis is dismal with survival of only 1–2 months. However, survival can be extended to 3–6 months with whole-brain radiotherapy (WBRT) and to 11 months with either surgery followed by adjuvant WBRT or surgery plus adjuvant stereotactic radiosurgery (SRS). Intravascular brachytherapy (generally iodine-125 (125I)) into the surgical cavity is another treatment strategy. 125I has been shown to confer local control... 

    Modeling of Cancer Progression by Using Evolutionary Game Theory

    , M.Sc. Thesis Sharif University of Technology Malekian Boroujeni, Negin (Author) ; Habibi, Jafar (Supervisor)
    Abstract
    Mathematical modeling and computer simulation are powerful tools to help cancer research because they provide a good insight of cancer progression and an efficient framework to test biological hypothesis. Most of the previous studies ignored many intracellular communication between tumor cells. Gap junction is one of the interaction ways between tumor cells which plays a crucial role in cancer progression. In the first phase of this thesis, a model of intracellular communication through gap junction using evolutionary game theory scoring is proposed. In the second phase of this thesis, cancer is modeled by Markov decision process (MDP). Given that considering nutrient level constant is one... 

    Design of Oxidative Stress Nanoparticles for Targeted drug Delivery to the Posterior Segment of the Eye and Breast Cancer

    , Ph.D. Dissertation Sharif University of Technology Behroozi, Farnaz (Author) ; Abdekhodaei, Mohammad Jafar (Supervisor) ; Baharvand, Hossein (Supervisor) ; Satarian, Leila ($item.subfieldsMap.e) ; Sadeghi, Hamid ($item.subfieldsMap.e)
    Abstract
    The oxidation-reduction (redox) responsive micelle system is based on a diselenide-containing triblock copolymer, poly(ε-caprolactone)-bis(diselenide-methoxy poly(ethylene glycol)/poly(ethylene glycol)-folate) [PCL-(SeSe-mPEG/PEG-FA)2]. Resulting in the development of tumor-targeted delivery for hydrophobic anticancer drugs. The diselenide bond, as redox-sensitive linkage, was designed, so it is located at the hydrophilic/hydrophobic hinge to allow complete micelles collapse and efficient drug release, in redox environments. The amphiphilic block copolymers self-assembled into micelles at concentrations above the critical micelle concentration (CMC) in an aqueous environment. Dynamic light... 

    Design and Fabrication of a Microfluidic Device to Study the Growth of Breast Cancer Cell

    , M.Sc. Thesis Sharif University of Technology Mohammad Hashemi, Hanieh (Author) ; Vosughi, Manuchehr (Supervisor) ; Shamloo, Amir (Supervisor) ; Naserifar, Naser (Supervisor)
    Abstract
    for decades Cancer has been one of the major causes of death universally. Though extensive efforts in developing new anticancer therapies, they face failures in clinical trials and curing the sick owing to time consuming and expensive preclinical models with poor predictions of drug responses in human. To address this challenge it is crucial to develop preclinical models mimicking the main aspects of a tumor that can provide effective prediction of therapeutic responses. Tumor on chip technology has appeared as a promising approach for providing effective cancer models and reliable preclinical predictions. In this project, collagen was first extracted as the main constituent of the tumor...