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    Cytochrome 4z1 expression is associated with poor prognosis in colon cancer patients

    , Article OncoTargets and Therapy ; Volume 14 , 2021 , Pages 5249-5260 ; 11786930 (ISSN) Al Saraireh, Y. M ; Alshammari, F. O. F. O ; Youssef, A. M. M ; Al Sarayreh, S ; Almuhaisen, G. H ; Alnawaiseh, N ; Al Shuneigat, J. M ; Alrawashdeh, H. M ; Sharif University of Technology
    Dove Medical Press Ltd  2021
    Abstract
    Purpose: Colon cancer is a leading cause of mortality worldwide. It has a relatively poor prognosis; therefore, new therapies are needed. One of the tumour-related enzymes that has gained considerable interest is CYP4Z1. This enzyme has been expressed in many tumours and has been hypothesized as a potential biomarker or target for novel anticancer therapies. Patients and Methods: CYP4Z1 overexpression was immunohistochemically examined in a large panel of colon tissue types including normal, benign, primary and metastatic ones, and the enzyme’s relation to histopathological features and patient survival was evaluated. Results: A high CYP4Z1 expression was observed in benign, primary and... 

    Synthesis and characterization of N- diethyl methyl chitosan

    , Article Iranian Polymer Journal (English Edition) ; Volume 13, Issue 5 , 2004 , Pages 431-436+437 ; 10261265 (ISSN) Avadi, M. R ; Mahdavinia, G ; Sadeghi, A. M ; Erfan, M ; Amini, M ; Tehrani, M. R ; Shafiee, A ; Sharif University of Technology
    2004
    Abstract
    Biodegradable polymers such as chitosan have been used extensively in biomedical fields in the form of sutures; wound dressing and as artificial skin. Colonic drug delivery for either local or systemic effects has been the subject of much research over the last decade. Chitosan exhibits poor solubility at pH values above 6 that prevent enhancing effects at sites of absorption of drugs. In the present work, N-diethyl methyl chitosan (DEMC) was prepared based on a modified two-step process via a 22 factorial design to optimize the preparative conditions. DEMC Polymer with different degrees of quaternization for pharmacological and pharmaceutical experiments was achieved. The reaction was... 

    Screening of glypican-6 expression in benign, primary and metastatic colon cancers

    , Article Clinical Medicine Insights: Oncology ; Volume 15 , 2021 ; 11795549 (ISSN) Al Saraireh, Y. M ; Alshammari, F. O. F. O ; Youssef, A. M. M ; Al Sarayreh, S ; Al Sarayra, Y. M ; Aborajooh, E ; Al Shuneigat, J ; Alrawashdeh, H. M ; Sharif University of Technology
    SAGE Publications Ltd  2021
    Abstract
    Background: The development of colon cancer has been described as a multistep process of carcinogenesis. Understanding molecular and cellular changes underlying this process is required to determine potential biomarkers and therapeutic targets in colon cancers. Several molecular entities, including glypicans, are implicated in cancer development. Among these is glypican-6, which is overexpressed in a limited number of cancers. This study aims to characterise the glypican-6 expression in different types of colon cancer. Methods: Immunohistochemistry was used to characterise glypican-6 expression in a panel of archived formalin-fixed, paraffin-embedded colon tissue types. These types included... 

    UV-prepared salep-based nanoporous hydrogel for controlled release of tetracycline hydrochloride in colon

    , Article Journal of Photochemistry and Photobiology B: Biology ; Volume 102, Issue 3 , March , 2011 , Pages 232-240 ; 10111344 (ISSN) Bardajee, G. R ; Pourjavadi, A ; Ghavami, S ; Soleyman, R ; Jafarpour, F ; Sharif University of Technology
    2011
    Abstract
    A highly swelling nanoporous hydrogel (NPH) was synthesized via UV-irradiation graft copolymerization of acrylic acid (AA) onto salep backbone and its application as a carrier matrix for colonic delivery of tetracycline hydrochloride (TH) was investigated. Optimized synthesis of the hydrogel was performed by the classic method. The swelling behavior of optimum hydrogel was measured in different media. The hydrogel formation was confirmed by Fourier transform infrared spectroscopy (FTIR) and thermo-gravimetric analysis (TGA/DTG/DTA). The study of the surface morphology of hydrogels using SEM showed a nanoporous (average pore size: about 350 nm) structure for the sample obtained under... 

    Chemotherapy Treatment Scheduling via Feedback Linearization Approach and Mixed Integer Programming Method

    , M.Sc. Thesis Sharif University of Technology Gholami, Shahrzad (Author) ; Salarieh, Hassan (Supervisor) ; Alasty, Aria ($item.subfieldsMap.e)
    Abstract
    Cancer is one of the leading causes of death in the world accounting for 7.6 million deaths (around 13% of all deaths) in 2008. Deaths from cancer worldwide are projected to continue rising, with an estimated 13.1 million deaths in 2030 according to WHO. Cancer is a disease caused by normal cells changing so that they grow in an uncontrolled way. There are over 200 different types of cancer because there are over 200 different types of body cells. Various types of treatments are available among them surgery, radiotherapy and chemotherapy are the three major ones. Mathematical models and control theories can be employed to improve the quality of treatment and obtain systematic strategies of... 

    mRNA-miRNA Interaction Network Analysis on Stages of Colorectal Cancer Abstract

    , M.Sc. Thesis Sharif University of Technology Shaebani Darjazi, Amir Reza (Author) ; Roostaazad, Reza (Supervisor) ; Najafi, Ali (Supervisor)
    Abstract
    Liver metastasis is the leading cause of death in patients with colorectal cancer (CRC). An increasing number of studies have shown that mRNAs, miRNAs, can play an important role in various biological processes that are related to cancer. Identifying and determining the relationship between them can help to diagnose and treat cancer.The aim of this study is to identify miRNA and molecular mRNA markers in the stage of polyp formation in order to diagnose colorectal cancer early and also to introduce therapeutic targets in the stage of metastasis.In this study, two microarray data sets GPL15207 and GPL16384 were analyzed to identify different miRNAs and mRNAs from the GEO database in three... 

    Exploring Pivot Genes and Clinical Prognosis Using Combined Bioinformatics Approaches in the Colon Cancer

    , M.Sc. Thesis Sharif University of Technology Vazirimoghadam, Ayoub (Author) ; Foroughmand Araabi, Mohammad Hadi (Supervisor)
    Abstract
    Colorectal cancer (CRC) is one of the most common cause of cancer death worldwide. Identification of pivot genes in colorectal cancer can play an important role as biomarkers in predicting and early diagnosis and reducing the number of deaths caused by this disease. In this study, the aim of which is to discover pivot genes in colorectal cancer, six microarray datasets selected from the GEO database including 277 tumor tissue samples and 325 normal colon tissue samples. After data processing, differentially expressed genes and CRC-related genes were screened and 285 shared genes between them were identified for subsequent analysis. Based on 285 shared genes, the protein-protein interaction... 

    Real-time Automatic Detection and Classification of Colorectal Polyps during Colonoscopy using Interpretable Artificial Intelligence

    , M.Sc. Thesis Sharif University of Technology Pourmand, Amir (Author) ; Rabiee, Hamid Reza (Supervisor)
    Abstract
    Cancer is the leading cause of death worldwide, and colorectal cancer is the second leading cause of death in women and the third in men. On the other hand, colon polyps can cause colorectal cancer. Therefore, early detection of polyps is of great importance. In recent years, many methods have been proposed for polyp detection using deep learning with high accuracy, but most of them have problems with speed, accuracy, or interpretability. Speed is important because colonoscopy should be performed as quickly and promptly as possible, and in many cases, it is not possible to repeat the colonoscopy. In addition, many of them only address the issue of polyp detection, while from a medical point... 

    Observer based feedback control of a biodynamical model of tumor growth with sampled measurements

    , Article 2016 European Control Conference, ECC 2016, 29 June 2016 through 1 July 2016 ; 2017 , Pages 2423-2428 ; 9781509025916 (ISBN) Gholami, S ; Salarieh, H ; Alasty, A ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2017
    Abstract
    This paper deals with the cancer treatment scheduling via observer-based feedback control of a tumor growth biodynamical model. An experimental nonlinear model is utilized to design a feedback controller. This model was validated by a pharmacological study on xenograft models obtained by transplantation of colon carcinoma cell lines in athymic mice. Input-output feedback linearization approach is used to linearize the nonlinear model of the system and design a control law. It is assumed that tumor weight can be measured in definite intervals. So a continuous-discrete observer is designed to estimate states of the system based on discrete sampled data which are tumor weight in this case. To... 

    Fuzzy support vector machine: An efficient rule-based classification technique for microarrays

    , Article BMC Bioinformatics ; Volume 14, Issue SUPPL13 , 2013 ; 14712105 (ISSN) Hajiloo, M ; Rabiee, H. R ; Anooshahpour, M ; Sharif University of Technology
    2013
    Abstract
    Background: The abundance of gene expression microarray data has led to the development of machine learning algorithms applicable for tackling disease diagnosis, disease prognosis, and treatment selection problems. However, these algorithms often produce classifiers with weaknesses in terms of accuracy, robustness, and interpretability. This paper introduces fuzzy support vector machine which is a learning algorithm based on combination of fuzzy classifiers and kernel machines for microarray classification.Results: Experimental results on public leukemia, prostate, and colon cancer datasets show that fuzzy support vector machine applied in combination with filter or wrapper feature selection... 

    Biological activated carbon process for biotransformation of azo dye carmoisine by klebsiella spp

    , Article Environmental Technology (United Kingdom) ; Volume 43, Issue 18 , 2022 , Pages 2713-2729 ; 09593330 (ISSN) Poorasadollah, D ; Bagheri Lotfabad, T ; Heydarinasab, A ; Yaghmaei, S ; Mohseni, F. A ; Sharif University of Technology
    Taylor and Francis Ltd  2022
    Abstract
    The feasibility of employing the biological activated carbon (BAC) process to debilitate azo dye Carmoisine by Klebsiella spp. was investigated. Plate assay revealed the capability of Klebsiella spp. for removal of Carmoisine via degradation. Kinetic parameters were measured for Carmoisine debilitation by Klebsiella spp. using the suspended anaerobic process. Two types of granular and rod-shaped activated carbon were used to form the biological beds in order to study the Carmoisine debilitation in batch processes. Scanning electron microscopy (SEM) and confocal laser scanning microscopy (CLSM) were used to indicate the colonization and biofilm formation of bacteria grown on activated carbon... 

    Photo-destruction of cancer cells by NIR irradiation and graphene nano-sheets

    , Article Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011, 13 June 2011 through 16 June 2011, Boston, MA ; Volume 3 , 2011 , Pages 236-239 ; 9781439871386 (ISBN) Abdolahad, M ; Mohajerzadeh, S ; Janmaleki, M ; Akhavan, O ; Azimi, S ; Clean Technology and Sustainable Industries Organization (CTSI); European Patent Office; Greenberg Traurig; Innovation and Materials Science Institute; Jackson Walker L.L.P ; Sharif University of Technology
    2011
    Abstract
    The photo-thermal therapy using nano-materials has attracted great attention as an efficient strategy for the next generation of cancer treatments. Recently, photo-thermal therapy based on nano-materials that can be activated by a skin-penetrating NIR (Near Infra Red) irradiation has been suggested as a noninvasive, harmless, and highly efficient therapeutic technique. Graphene nano-layers synthesized by a bio-compatible method, with reduced toxicity, will be a suitable candidate for the photo-thermal therapeutic agent. A significant amount of heat is generated upon excitation with near-infrared light (NIR, 700-1100nm) which is transparent to biological species including skins. In this...