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    Diagnosis of schizophrenia from R-fMRI data using Ripplet transform and OLPP

    , Article Multimedia Tools and Applications ; Volume 79, Issue 31-32 , 2020 , Pages 23401-23423 Sartipi, S ; Kalbkhani, H ; Shayesteh, M. G ; Sharif University of Technology
    Springer  2020
    Abstract
    Schizophrenia is a severe brain disease that influences the behaviour and thought of person. These effects may fail in achieving the expected levels of interpersonal, academic, or occupational functioning. Although the underlying mechanism is not yet clear, the early detection of schizophrenia is an attractive and challenging research area. There are differences in brain connections of patients and healthy people. This study presents a new computer-aided diagnosis (CAD) method to diagnose schizophrenia (SZ) patients from normal control (NC) people by using the rest-state functional magnetic resonance imaging (R-fMRI) data. fMRI data has a huge dimension, and extracting efficient features is... 

    WN-based approach to melanoma diagnosis from dermoscopy images

    , Article IET Image Processing ; Volume 11, Issue 7 , 2017 , Pages 475-482 ; 17519659 (ISSN) Sadri, A. R ; Azarianpour, S ; Zekri, M ; Emre Celebi, M ; Sadri, S ; Sharif University of Technology
    Abstract
    A new computer-aided diagnosis (CAD) system for detecting malignant melanoma from dermoscopy images based on a fixed grid wavelet network (FGWN) is proposed. This novel approach is unique in at least three ways: (i) the FGWN is a fixed WN which does not require gradient-type algorithms for its construction, (ii) the construction of FGWN is based on a new regressor selection technique: D-optimality orthogonal matching pursuit (DOOMP), and (iii) the entire CAD system relies on the proposed FGWN. These characteristics enhance the integrity and reliability of the results obtained from different stages of automatic melanoma diagnosis. The DOOMP algorithm optimises the network model approximation... 

    Esophageal gross tumor volume segmentation using a 3D convolutional neural network

    , Article Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 16 September 2018 through 20 September 2018 ; Volume 11073 LNCS , 2018 , Pages 343-351 ; 03029743 (ISSN); 9783030009366 (ISBN) Yousefi, S ; Sokooti, H ; Elmahdy, M. S ; Peters, F. P ; Manzuri Shalmani, M. T ; Zinkstok, R. T ; Staring, M ; Sharif University of Technology
    Springer Verlag  2018
    Abstract
    Accurate gross tumor volume (GTV) segmentation in esophagus CT images is a critical task in computer aided diagnosis (CAD) systems. However, because of the difficulties raised by the contrast similarity between esophageal GTV and its neighboring tissues in CT scans, this problem has been addressed weakly. In this paper, we present a 3D end-to-end method based on a convolutional neural network (CNN) for this purpose. We leverage design elements from DenseNet in a typical U-shape. The proposed architecture consists of a contractile path and an extending path that includes dense blocks for extracting contextual features and retrieves the lost resolution respectively. Using dense blocks leads to... 

    A novel method for segmentation of leukocyte nuclei based on color transformation

    , Article 26th National and 4th International Iranian Conference on Biomedical Engineering, ICBME 2019, 27 November 2019 through 28 November 2019 ; 2019 , Pages 213-217 ; 9781728156637 (ISBN) Amirkhani, A ; Maheri, J ; Behroozi, H ; Kolahdoozi, M ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2019
    Abstract
    Acute lymphoblastic leukemia is one of the most common hematologic malignancies among children, caused by uncontrolled growth of leukocytes. Since the main hallmarks of the disease is not specific, a considerable number of patients have been being misdiagnosed. Early diagnosis of the disease is usually made by morphological investigation of leukocytes under microscope. In light of the facts that decrease in cytoplasm-to-nucleus ratio is one of the main indicators of cancerous cells, and an accurate segmentation phase will lead to extraction of representative features, segmentation step is acknowledged as being crucial in design of a computer aided diagnosis (CAD). Previous researches have... 

    Towards an automatic diagnosis system for lumbar disc herniation: the significance of local subset feature selection

    , Article Biomedical Engineering - Applications, Basis and Communications ; 2018 ; 10162372 (ISSN) Ebrahimzadeh, E ; Fayaz, F ; Nikravan, M ; Ahmadi, F ; Dolatabad, M. R ; Sharif University of Technology
    World Scientific Publishing Co. Pte Ltd  2018
    Abstract
    Herniation in the lumbar area is one of the most common diseases which results in lower back pain (LBP) causing discomfort and inconvenience in the patients' daily lives. A computer aided diagnosis (CAD) system can be of immense benefit as it generates diagnostic results within a short time while increasing precision of diagnosis and eliminating human errors. We have proposed a new method for automatic diagnosis of lumbar disc herniation based on clinical MRI data. We use T2-W sagittal and myelograph images. The presented method has been applied on 30 clinical cases, each containing 7 discs (210 lumbar discs) for the herniation diagnosis. We employ Otsu thresholding method to extract the...