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    Cancer Models Based on Reaction-Diffusion Equations

    , M.Sc. Thesis Sharif University of Technology Khanzad, Zahra (Author) ; Fotouhi, Morteza (Supervisor)
    Abstract
    The role of a mathematical model is to explain a set of experiments, and to make predictions. In setting up a mathematical model of a biological process, by a set of differential equations, it is very important to determine the numerical value of the parameters. For biological processes are typically valid only within a limited range of parameters. In the last decades, various cancer models have been developed in which the evolution of the densities of cells (abnormal, normal, or dead) and the concentrations of biochemical species are described in terms of differential equations. Some of these models use only ordinary differential equations (ODEs), ignoring the spatial effects of tumor... 

    Numerical Simulation of Drug Delivery to Cancerous Tumors

    , M.Sc. Thesis Sharif University of Technology Hosseinizadeh, Ehsan (Author) ; Dehghani Firoozabadi, Bahar (Supervisor)
    Abstract
    The tumor is a collection of cells (cell mass) caused by the lack or ineffectiveness of cellular proliferation inhibitors. Many types of cancers are associated with the emergence of a tumor, a tissue with specific physiological characteristics. The tumors grow very fast so researchers try to prevent their growth and eventually destroy them. Thermal ablation by MWA(microwave ablation) is a common and minimally-invasive treatment for primary and secondary liver tumors that can not be cured by surgery. During treatment, the tissue is heated by microwaves and at a temperature higher than 50 degree Celsius, destroyed by thermal ablation. In this study, two thermal models have been used to... 

    Theoretical study of diffusional release of a dispersed solute from cylindrical polymeric matrix: A novel configuration for providing zero-order release profile

    , Article Applied Mathematical Modelling ; Volume 73 , 2019 , Pages 136-145 ; 0307904X (ISSN) Khorrami Jahromi, A ; Shieh, H ; Saadatmand, M ; Sharif University of Technology
    Elsevier Inc  2019
    Abstract
    In the context of controlled release drug delivery approaches, the systems providing zero-order release kinetics have special advantages. Through employing these systems, drug concentration could be maintained within the therapeutic window over release time; thus maximum effectiveness alongside minimized side effects of the drug are achieved. However, obtaining zero-order drug release is extremely challenging. One of the main obstacles is the fact that implemented devices should be designed to overcome the decreasing mass transfer driving force, especially, in polymeric systems in which diffusion mechanism is dominant. In this study, we developed a new configuration of a polymeric matrix... 

    Computational study of geometric effects of bottom wall microgrooves on cell docking inside microfluidic devices

    , Article Journal of Mechanics in Medicine and Biology ; Volume 21, Issue 2 , 2021 ; 02195194 (ISSN) Ahandoust, S ; Saadatmand, M ; Sharif University of Technology
    World Scientific  2021
    Abstract
    Cells docking inside microfluidic devices is effective in studying cell biology, cell-based biosensing, as well as drug screening. Furthermore, single cell and regularly cells docking inside the microstructure of microfluidic systems are advantageous in different analyses of single cells exposed to equal drug concentration and mechanical stimulus. In this study, we investigated bottom wall microgrooves with semicircular and rectangular geometries with different sizes which are suitable for single cell docking along the length of the microgroove in x-direction and numerous cells docking regularly in one line inside the microgroove in a 3D microchannel. We used computational fluid dynamics to... 

    Computational study of geometric effects of bottom wall microgrooves on cell docking inside microfluidic devices

    , Article Journal of Mechanics in Medicine and Biology ; Volume 21, Issue 2 , 2021 ; 02195194 (ISSN) Ahandoust, S ; Saadatmand, M ; Sharif University of Technology
    World Scientific  2021
    Abstract
    Cells docking inside microfluidic devices is effective in studying cell biology, cell-based biosensing, as well as drug screening. Furthermore, single cell and regularly cells docking inside the microstructure of microfluidic systems are advantageous in different analyses of single cells exposed to equal drug concentration and mechanical stimulus. In this study, we investigated bottom wall microgrooves with semicircular and rectangular geometries with different sizes which are suitable for single cell docking along the length of the microgroove in x-direction and numerous cells docking regularly in one line inside the microgroove in a 3D microchannel. We used computational fluid dynamics to... 

    A tool for designing tree-like concentration gradient generators for lab-on-a-chip applications

    , Article Chemical Engineering Science ; Volume 212 , 2020 Ebadi, M ; Moshksayan, K ; Kashaninejad, N ; Saidi, M. S ; Nguyen, N. T ; Sharif University of Technology
    Elsevier Ltd  2020
    Abstract
    Concentration gradient generators (CGGs) help biologists to perform large scale, fast and high-throughput experiments. This paper introduces a design tool called Tree-like Concentration gradient generator Design Tool (TCDT). The performance of this tool is validated both numerically and experimentally. Three CGGs were fabricated using three different fabrication methods and design parameters. The performance of these devices was examined using the measurement of fluorescent and dye intensity. The performance of the design tool for non-linear and multi-drug concentration gradient generations was investigated as well. In addition, a method was developed to investigate the multi-drug... 

    Adsorption of proteins at the solution/air interface influenced by added non-ionic surfactants at very low concentrations for both components. 1. Dodecyl dimethyl phospine oxide

    , Article Colloids and Surfaces A: Physicochemical and Engineering Aspects ; Volume 475, Issue 1 , June , 2015 , Pages 62-68 ; 09277757 (ISSN) Lotfi, M ; Javadi, A ; Lylyk, S. V ; Bastani, D ; Fainerman, V. B ; Miller, R ; Sharif University of Technology
    Abstract
    The adsorption of proteins at liquid interfaces happens at rather low bulk concentrations due to their rather high surface activity. In contrast typical surfactants start to decrease the surface tension at bulk concentration in the range of mmol/l and reach a minimum value at about two or three orders of magnitude higher concentration. The two proteins studied here, β-lactoglobulin and β-casein, adsorb already remarkably at much lower concentrations, i.e. less than 1. μmol/l. When smallest amounts of a non-ionic surfactant are added to low concentrated protein solutions, changes in the surface tension are observed which cannot be explained by the existing theoretical models. An agreement... 

    The effect of hematocrit and nanoparticles diameter on hemodynamic parameters and drug delivery in abdominal aortic aneurysm with consideration of blood pulsatile flow

    , Article Computer Methods and Programs in Biomedicine ; Volume 195 , October , 2020 Jafarzadeh, S ; Nasiri Sadr, A ; Kaffash, E ; Goudarzi, S ; Golab, E ; Karimipour, A ; Sharif University of Technology
    Elsevier Ireland Ltd  2020
    Abstract
    Background and Objective: The present article has simulated to investigate the efficient hemodynamic parameters, the drug persistence, and drug distribution on an abdominal aortic aneurysm. Methods: Blood as a non-Newtonian fluid enters the artery acting as a real pulse waveform; its behavior is dependent on hematocrit and strain rate. In this simulation of computational fluid dynamic, magnetic nanoparticles of iron oxide which were in advance coated with the drug, are injected into the artery during a cardiac cycle. A two-phase model was applied to investigate the distribution of these carriers. Results: The results are presented for different hematocrits and the nanoparticle diameter. It...