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    Control of diseases epidemic spreading through metapopulation models

    , Article International Journal of Control Theory and Applications ; Volume 8, Issue 2 , 2015 , Pages 769-784 ; 09745572 (ISSN) Afshar, M ; Razvan, M. R ; Sharif University of Technology
    International Sciences Press  2015
    Abstract
    We study a system of ordinary differential equations which describes the metapopulation SIR model. The main target is to control the epidemic spreading using the structure of connections between cities. For this purpose, we formulate optimal control strategy that the control represents a drug treatment and Prevention strategies . Some methods are given in numerical example section such as control through spectral radius of movement matrix or optimal control through travelling between cities. Existence results for the optimal control are studied  

    An opportunistic network approach towards disease spreading

    , Article 6th International Conference on Complex Networks and Their Applications, Complex Networks 2017, 29 November 2017 through 1 December 2017 ; Volume 689 , November , 2018 , Pages 314-325 ; 1860949X (ISSN) ; 9783319721491 (ISBN) Joneydi, S ; Khansari, M ; Kaveh, A ; Sharif University of Technology
    Springer Verlag  2018
    Abstract
    Research in modeling epidemic spreading in static networks has reached maturity in recent years. On the contrary, disease spreading in dynamic networks can be considered as an important open issue. Hence, mapping dynamic interactions of crowds to a static network and then immunizing the resulting network is the subject of this paper. In this work, we analogize spreading of diseases in dynamic networks -based on dynamic interactions- to message delivery in opportunistic networks. Thus, different diseases which have different spreading behaviors could be simulated by specific routing protocols. Having used interactions among individuals in the utilized dataset, the resulting network is... 

    An efficient dynamic allocation mechanism for security in networks of interdependent strategic agents

    , Article Dynamic Games and Applications ; Volume 9, Issue 4 , 2019 , Pages 914-941 ; 21530785 (ISSN) Farhadi, F ; Tavafoghi, H ; Teneketzis, D ; Golestani, S. J ; Sharif University of Technology
    Springer New York LLC  2019
    Abstract
    Motivated by security issues in networks, we study the problem of incentive mechanism design for dynamic resource allocation in a multi-agent networked system. Each strategic agent has a private security state which can be safe or unsafe and is only known to him. At every time, each agent faces security threats from outside as well as from his unsafe neighbors. Therefore, the agents’ states are correlated and have interdependent stochastic dynamics. Agents have interdependent valuations, as each agent’s instantaneous utility depends on his own security state as well as his neighbors’ security states. There is a network manager that can allocate a security resource to one agent at each time... 

    Interplay between competitive and cooperative interactions in a three-player pathogen system

    , Article Royal Society Open Science ; Volume 7, Issue 1 , 2020 Pinotti, F ; Ghanbarnejad, F ; Hövel, P ; Poletto, C ; Sharif University of Technology
    Royal Society Publishing  2020
    Abstract
    In ecological systems, heterogeneous interactions between pathogens take place simultaneously. This occurs, for instance, when two pathogens cooperate, while at the same time, multiple strains of these pathogens co-circulate and compete. Notable examples include the cooperation of human immunodeficiency virus with antibiotic-resistant and susceptible strains of tuberculosis or some respiratory infections with Streptococcus pneumoniae strains. Models focusing on competition or cooperation separately fail to describe how these concurrent interactions shape the epidemiology of such diseases. We studied this problem considering two cooperating pathogens, where one pathogen is further structured... 

    An Approach to Optimize Resource Allocation and Strategies to Control Infectious Diseases

    , M.Sc. Thesis Sharif University of Technology Mohammadi, Ahmad (Author) ; Najafi, Mehdi (Supervisor)
    Abstract
    Infectious diseases have always been a threat to mankind, and is the greatest causes of death of children and young people. Although this type of diseases is a serious threat to public health; the allocated resources in responding to a semi-large pandemic is inadequate. Therefore, it is important to spend the resources in the most effective and efficient ways to improve pandemic response capability. That is why considerable research be devoted to study different aspects of epidemics, and developed mathematical approaches to choose appropriate strategies in pandemic response. Since the epidemic models are simplified means to describe the transmission of disease, researchers often use these... 

    A decision support system for demand management in healthcare supply chains considering the epidemic outbreaks: A case study of coronavirus disease 2019 (COVID-19)

    , Article Transportation Research Part E: Logistics and Transportation Review ; Volume 138 , June , 2020 Govindan, K ; Mina, H ; Alavi, B ; Sharif University of Technology
    Elsevier Ltd  2020
    Abstract
    The disasters caused by epidemic outbreaks is different from other disasters due to two specific features: their long-term disruption and their increasing propagation. Not controlling such disasters brings about severe disruptions in the supply chains and communities and, thereby, irreparable losses will come into play. Coronavirus disease 2019 (COVID-19) is one of these disasters that has caused severe disruptions across the world and in many supply chains, particularly in the healthcare supply chain. Therefore, this paper, for the first time, develops a practical decision support system based on physicians' knowledge and fuzzy inference system (FIS) in order to help with the demand... 

    Impact of temporal correlations on high risk outbreaks of independent and cooperative SIR dynamics

    , Article PLoS ONE ; Volume 16, Issue 7 July , 2021 ; 19326203 (ISSN) Sajjadi, S ; Ejtehadi, M. R ; Ghanbarnejad, F ; Sharif University of Technology
    Public Library of Science  2021
    Abstract
    We first propose a quantitative approach to detect high risk outbreaks of independent and coinfective SIR dynamics on three empirical networks: A school, a conference and a hospital contact network. This measurement is based on the k-means clustering method and identifies proper samples for calculating the mean outbreak size and the outbreak probability. Then we systematically study the impact of different temporal correlations on high risk outbreaks over the original and differently shuffled counterparts of each network. We observe that, on the one hand, in the coinfection process, randomization of the sequence of the events increases the mean outbreak size of high-risk cases. On the other... 

    Exact solution of generalized cooperative susceptible-infected-removed (SIR) dynamics

    , Article Physical Review E ; Volume 100, Issue 1 , 2019 ; 24700045 (ISSN) Zarei, F ; Moghimi Araghi, S ; Ghanbarnejad, F ; Sharif University of Technology
    American Physical Society  2019
    Abstract
    In this paper, we introduce a general framework for coinfection as cooperative susceptible-infected-removed (SIR) dynamics. We first solve the SIR model analytically for two symmetric cooperative contagions [L. Chen, Europhys. Lett. 104, 50001 (2013)10.1209/0295-5075/104/50001] and then generalize and solve the model exactly in the symmetric scenarios for three and more cooperative contagions. We calculate the transition points and order parameters, i.e., the total number of infected hosts. We show that the behavior of the system does not change qualitatively with the inclusion of more diseases. We also show analytically that there is a saddle-node-like bifurcation for two cooperative SIR... 

    Inference for Network Parameters in Stochastic Epidemic Models

    , M.Sc. Thesis Sharif University of Technology Dehbod, Siamak (Author) ; Ejtehadi, Mohammad Reza (Supervisor)
    Abstract
    Different models describing the procedure of epidemics are complicated and involving numerous factors. Some of these models that used a stochastic network for modelling epidemics had been successful in statistical prediction of spreading epidemics. However, in many cases there is no direct way to determine parameters of these models. In this thesis it has been desired to estimate those parameters based on historical data of epidemics To estimate structural parameters, concerning epidemic network, two independent inference have been studied. In the first inference, the probability of disease transmission from one person to another is estimated.
    In the second, using Bayesian inference,... 

    A New Immunization Algorithm Based on Spectral Properties for Complex Networks

    , M.Sc. Thesis Sharif University of Technology Zahedi, Ramin (Author) ; Khansari, Mohammd (Supervisor)
    Abstract
    Vaccination is one of the ways of disease control and prevention, which not only protect individuals against the disease, but also reduce the disease spread rate. Mass vaccination of individuals is not always possible due to the high cost and limitation of immunization resources. Therefore, researchers are always seeking solutions to find the persons that their immunization may have a greater impact in reduction of disease spread rate. The advent of network epidemic models and the possibility of removal the secured nodes in those models, showed that this problem is equivalent to finding a limited set of individuals that their removal will eliminate or minimize the number of people at risk of... 

    Preventing The Spread of Disease in Social Networks

    , M.Sc. Thesis Sharif University of Technology Abnousi, Armen (Author) ; Jafari, Amir (Supervisor)
    Abstract
    In this thesis, first we will have a thorough review on problems and models presented in the field of contagion in networks (spread of diseases, spread of computer viruses,etc.). Then we will investigate the basic model of virus inoculation game with purely selfish players and the modified version of it which takes into account a factor of friendship. We will discuss the results of these models including computing and comparing Nash Equilibria  

    Persistence in Seasonally Forced Epidemiological Models and Seasonally Varying Predator-Prey Models Via the Basic Reproduction Number

    , M.Sc. Thesis Sharif University of Technology Hashemian, Zahra (Author) ; Hesaraki, Mahmoud (Supervisor)
    Abstract
    In this study, we will examine persistence of various kinds of seasonally forced epidemiological models and seasonally varying predator-prey models. The results of our study regarding persistence of the models will be shown via basic reproduction number. We will show that, in the framework of our study and under some conditions, persistence is obtained as long as the basic reproduction number is bigger than one. We will also prove that, in the framework of our study and under sufficient conditions, if the basic reproduction number is smaller than one, the species under discussion won’t survive in the predator-prey models, and the disease(s) would go extinct in the epidemiological... 

    Optimal Two-Phase Vaccine Allocation under Uncertain Impacts and Different Transition Rates

    , M.Sc. Thesis Sharif University of Technology Dodangeh, Sana (Author) ; Najafi, Mehdi (Supervisor) ; Rafiee, Majid (Supervisor)
    Abstract
    Infectious diseases have always threatened the health of human beings. One of the most important causes of mortality in human societies is infectious diseases. The spread of these diseases in society, even if does not lead to death, can have devastating effects on society. Influenza is one of the infectious diseases that has attracted much attention today. It can be mild or severe and even cause hospitalization and death. Therefore, controlling and preventing the epidemic of this disease is very important. Epidemic models are commonly used to simulate the spread of infectious diseases. In this study to identify the influenza outbreak, a stochastic multigroup SEIR model with the migration... 

    Epidemiology and Networks

    , M.Sc. Thesis Sharif University of Technology Ashrafi Amineh, Rasa (Author) ; Haji Sadeghi, Mir Omid (Supervisor) ; Razvan, Mahammad Reza (Supervisor)
    Abstract
    Networks and the epidemiology of directly transmitted infectious diseases are fun-damentally linked. The foundations of epidemiology and early epidemiological models were based on population wide random-mixing, but in practice each individual has a finite set of contacts to whom they can pass infection; the ensemble of all such contacts forms a network. Knowledge of the structure of the network allows models to compute the epidemic dynamics at the population scale from the individual-level behaviour of infections.Motivated by the analysis of social networks, we study a model of random net-works that has both a given degree distribution and a tunable clustering coefficient.We consider two... 

    Fair Multi-Dose Multi-Vaccine Distribution with Uncertain Demand

    , M.Sc. Thesis Sharif University of Technology Asad Araghi, Alireza (Author) ; Haji, Alireza (Supervisor) ; Fatahi Valilai, Omid (Supervisor)
    Abstract
    Among disasters, outbreaks of pandemics account for excessive human and material damages,including a significant number of deaths. During any pandemic and once an or a set of effective vaccines have been identified/produced, governments all around the world enter a crucial phase when a crucial demand for an effective global vaccination campaign arises to vaccinate the population to stop/avoid the disease, knowing that the vaccines are not immediately available and may even become available with considerable delays (i.e., delivery and validation delays). Therefore, such phase of a pandemic is very crucial to identify and produce effective vaccines as well as to globally and equitably... 

    Covid-19 & Income Mobility in Iran

    , M.Sc. Thesis Sharif University of Technology Mehri Khonakdari, Reza (Author) ; Keshavarz Haddad, Gholamreza (Supervisor)
    Abstract
    During the covid-19 pandemic, in many countries, women's employment sector received more impact than men's. Some researchers consider this incident due to a decrease in the supply of women due to the closure of childcare centers and absenteeism in schools. Some consider this to be due to a reduction in the demand for women's labor due to the damage to the service sector. In this research, using the transition matrix, we showed that, during the epidemic period, the households in which women were employed in the pre-epidemic period (first group) had a greater reduction in income mobility than the households in which only men were employed (second group). Then, using the ordered logit of... 

    A new immunization algorithm based on spectral properties for complex networks

    , Article 2015 7th Conference on Information and Knowledge Technology, IKT 2015, 26 May 2015 through 28 May 2015 ; May , 2015 , Page(s): 1 - 5 ; 9781467374859 (ISBN) Zahedi, R ; Khansari, M ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2015
    Abstract
    Nowadays, we are facing epidemic spreading in many different areas; examples are infection propagation, rumor spreading and computer viruses in computer networks. Finding a strategy to control and mitigate the spread of these epidemics is gaining much interest in recent researches. Due to limitation of immunization resources, it is important to establish a strategy for selecting nodes which has the most effect in mitigating epidemics. In this paper, we propose a new algorithm that minimizes the worst expected growth of an epidemic by reducing the size of the largest connected component of the underlying contact network. The proposed algorithm is applicable to any level of available resources... 

    Exact Solution of Generalized Cooperative SIR Dynamics

    , M.Sc. Thesis Sharif University of Technology Zarei, Fatemeh (Author) ; Moghimi Araghi, Saman (Supervisor) ; Ghanbarnejad, Fakhteh (Co-Supervisor)
    Abstract
    Epidemics are one of the most important issues in social environments, economics systems, medicine, and other environments. In the study of the epidemics, some behaviors have been observed that are very similar to the phase transition in critical systems. For example, by changing the parameters that the epidemics process is characterized, the system’s epidemic behavior changes. Depending on the type of problem, this behavior change may be similar to continuous or discontinuous phase transitions. One of the fascinating issues that have just been taken into consideration in this area is the cooperation of two or more diseases. This means that the rate of transmission of a disease depends on... 

    Failure Tolerance of Epidemic Spreading in Complex Network

    , M.Sc. Thesis Sharif University of Technology Mirzasoleiman, Baharan (Author) ; Jalili, Mahdi (Supervisor)
    Abstract
    Complex networks serve as generic models for many social, technological and biological systems that have been shown to share a number of common structural properties such as power-law degree distribution and small-worldness. These networks determine interactions and influence the spread of diseases, behaviours and ideas. Epidemics and failures like new behaviours ideas and innovations can spread throughout a network and prevent it from doing its functionalities. In this work, we investigate error and attack tolerance of epidemic spreading in complex networks. The main content of this thesis is arranged in three sections as follows: Firstly, the effect of random and systematic failures is... 

    A Multilayer Approach to Network Immunization Based on Digital Information

    , M.Sc. Thesis Sharif University of Technology Joneydi, Sara (Author) ; Khansari, Mohammad (Supervisor)
    Abstract
    Researching in the field of optimization of network immunizing and epidemic spreading is an active and important area. According to literature review, influential nodes are detected based on global graph metrics such as centrality measures. On the other hand, when a network infrastructure is not available and a direct or straight path between source and destination may not be accessible, one can use opportunistic networks routing protocols in Delay Tolerant Networks to recognize influential users is an appropriate approach. In this work, we use a real world three layer dataset which consists of digital data (social relations and Bluetooth contact traces) of individuals. We convert the real...