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    ECG fiducial points extraction by extended Kalman filtering

    , Article 2013 36th International Conference on Telecommunications and Signal Processing, TSP 2013 ; 2013 , Pages 628-632 ; 9781479904044 (ISBN) Akhbari, M ; Shamsollahi, M. B ; Jutten, C ; Sharif University of Technology
    2013
    Abstract
    Most of the clinically useful information in Electrocardiogram (ECG) signal can be obtained from the intervals, amplitudes and wave shapes (morphologies). The automatic detection of ECG waves is important to cardiac disease diagnosis. In this paper, we propose an efficient method for extraction of characteristic points of ECG. The method is based on a nonlinear dynamic model, previously introduced for generation of synthetic ECG signals. For estimating the parameters of model, we use an Extendend Kalman Filter (EKF). By introducing a simple AR model for each of the dynamic parameters of Gaussian functions in model and considering separate states for ECG waves, the new EKF structure was... 

    Fiducial points extraction and characteristicwaves detection in ECG signal using a model-based bayesian framework

    , Article ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings ; 2013 , Pages 1257-1261 ; 15206149 (ISSN) ; 9781479903566 (ISBN) Akhbari, M ; Shamsollahi, M. B ; Jutten, C ; Sharif University of Technology
    2013
    Abstract
    The automatic detection of Electrocardiogram (ECG) waves is important to cardiac disease diagnosis. A good performance of an automatic ECG analyzing system depends heavily upon the accurate and reliable detection of QRS complex, as well as P and T waves. In this paper, we propose an efficient method for extraction of characteristic points of ECG signal. The method is based on a nonlinear dynamic model, previously introduced for generation of synthetic ECG signals. For estimating the parameters of model, we use an Extendend Kalman Filter (EKF). By introducing a simple AR model for each of the dynamic parameters of Gaussian functions in model and considering separate states for ECG waves, the... 

    ECG segmentation and fiducial point extraction using multi hidden Markov model

    , Article Computers in Biology and Medicine ; Volume 79 , 2016 , Pages 21-29 ; 00104825 (ISSN) Akhbari, M ; Shamsollahi, M. B ; Sayadi, O ; Armoundas, A. A ; Jutten, C ; Sharif University of Technology
    Elsevier Ltd 
    Abstract
    In this paper, we propose a novel method for extracting fiducial points (FPs) of electrocardiogram (ECG) signals. We propose the use of multi hidden Markov model (MultiHMM) as opposed to the traditional use of Classic HMM. In the MultiHMM method, each segment of an ECG beat is represented by a separate ergodic continuous density HMM. Each HMM has different state number and is trained separately. In the test step, the log-likelihood of two consecutive HMMs is compared and a path is estimated, which shows the correspondence of each part of the ECG signal to the HMM with the maximum log-likelihood. Fiducial points are estimated from the obtained path. For performance evaluation, the Physionet... 

    Comparison of ECG fiducial point extraction methods based on dynamic bayesian network

    , Article 2017 25th Iranian Conference on Electrical Engineering, ICEE 2017, 2 May 2017 through 4 May 2017 ; 2017 , Pages 95-100 ; 9781509059638 (ISBN) Akhbari, M ; Shamsollahi, M. B ; Jutten, C ; Sharif University of Technology
    Abstract
    Cardiovascular diseases are one of the major causes of mortality in humans. One way to diagnose heart diseases and abnormalities is processing of cardiac signals such as electrocardiogram (ECG) signal. In many ECG analysis, location of peak, onset and offset of ECG waves must be extracted as a preprocessing step. These points are called ECG fiducial points (FPs) and convey clinically useful information. In this paper, we compare some FP extraction methods including three methods proposed recently by our research team. These methods are based on extended Kalman filter (EKF), hidden Markov model (HMM) and switching Kalman filter (SKF). Results are given for ECG signals of QT database. For all... 

    ECG fiducial point extraction using switching Kalman filter

    , Article Computer Methods and Programs in Biomedicine ; Volume 157 , 2018 , Pages 129-136 ; 01692607 (ISSN) Akhbari, M ; Montazeri Ghahjaverestan, N ; Shamsollahi, M. B ; Jutten, C ; Sharif University of Technology
    Elsevier Ireland Ltd  2018
    Abstract
    In this paper, we propose a novel method for extracting fiducial points (FPs) of the beats in electrocardiogram (ECG) signals using switching Kalman filter (SKF). In this method, according to McSharry's model, ECG waveforms (P-wave, QRS complex and T-wave) are modeled with Gaussian functions and ECG baselines are modeled with first order auto regressive models. In the proposed method, a discrete state variable called “switch” is considered that affects only the observation equations. We denote a mode as a specific observation equation and switch changes between 7 modes and corresponds to different segments of an ECG beat. At each time instant, the probability of each mode is calculated and... 

    A model-based Bayesian framework for ECG beat segmentation

    , Article Physiological Measurement ; Volume 30, Issue 3 , 2009 , Pages 335-352 ; 09673334 (ISSN) Sayadi, O ; Shamsollahi, M. B ; Sharif University of Technology
    2009
    Abstract
    The study of electrocardiogram (ECG) waveform amplitudes, timings and patterns has been the subject of intense research, for it provides a deep insight into the diagnostic features of the heart's functionality. In some recent works, a Bayesian filtering paradigm has been proposed for denoising and compression of ECG signals. In this paper, it is shown that this framework may be effectively used for ECG beat segmentation and extraction of fiducial points. Analytic expressions for the determination of points and intervals are derived and evaluated on various real ECG signals. Simulation results show that the method can contribute to and enhance the clinical ECG beat segmentation performance. ©... 

    Inter-Beat and Intra-Beat ECG Interval Analysis Based on State Space and Hidden Markov Models

    , Ph.D. Dissertation Sharif University of Technology Akhbari, Mahsa (Author) ; Shamsollahi, Mohammad Bagher (Supervisor)
    Abstract
    Cardiovascular diseases are one of the major causes of mortality in humans. One way to diagnose heart diseases and abnormalities is processing of cardiac signals such as ECG.In many of these processes, inter-beat and intra-beat features of ECG signal must be extracted. These features include peak, onset and offset of ECG waves,meaningful intervals and segments that can be defined for ECG signal. ECG fiducial point (FP) extraction refers to identifying the location of the peak as well as the onset and offset of the P-wave,QRS complex and T-wave which convey clinically useful information. However, the precise segmentation of each ECG beat is a difficult task, even for experienced... 

    Model-based ECG fiducial points extraction using a modified extended Kalman filter structure

    , Article 2008 1st International Symposium on Applied Sciences in Biomedical and Communication Technologies, ISABEL 2008, Aalborg, 25 October 2008 through 28 October 2008 ; December , 2008 ; 9781424426478 (ISBN) Sayadi, O ; Shamsollahi, M. B ; Sharif University of Technology
    2008
    Abstract
    This paper presents an efficient algorithm based on a nonlinear dynamical model for the precise extraction of the characteristic points of electrocardiogram (ECG), which facilitates the HRV analysis. Determining the precise position of the waveforms of an ECG signal is complicated due to the varying amplitudes of its waveforms, the ambiguous and changing form of the complex and morphological variations with unknown sources of drift. A model-based approach handles these complications; therefore a method based on the usage of this concept in an extended Kalman filter structure has been developed. The fiducial points are detected using both the parameters of Gaussian-functions of the model, and... 

    Model-based fiducial points extraction for baseline wandered electrocardiograms

    , Article IEEE Transactions on Biomedical Engineering ; Volume 55, Issue 1 , 2008 , Pages 347-351 ; 00189294 (ISSN) Sayadi, O ; Shamsollahi, M. B ; Sharif University of Technology
    2008
    Abstract
    A fast algorithm based on the nonlinear dynamical model for the electrocardiogram (ECG) is presented for the precise extraction of the characteristic points of these signals with baseline drift. Using the adaptive bionic wavelet transform, the baseline wander is removed efficiently. In fact by the means of the bionic wavelet transform, the resolution in the time-frequency domain can be adaptively adjusted not only by the signal frequency but also by the signal instantaneous amplitude and its first-order differential, which results in a better baseline wander cancellation. At the next step the parameters of the model are chosen to have the least square error with the original ECG. Determining...