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Total 68 records

    Emergence of Hopf bifurcation in an extended SIR dynamic

    , Article PLoS ONE ; Volume 17, Issue 10 October , 2022 ; 19326203 (ISSN) Roostaei, A ; Barzegar, H ; Ghanbarnejad, F ; Sharif University of Technology
    Public Library of Science  2022
    Abstract
    In this paper, the original SIR model is improved by considering a new compartment, representing the hospitalization of critical cases. A system of differential equations with four blocks is developed to analyze the treatment of severe cases in an Intensive Care Unit (ICU). The outgoing rate of the infected individuals who survive is divided into nI and bI/1+b where the second term represents the transition rate of critical cases that are hospitalized in ICU. The findings demonstrate the existence of forward, backward and Hopf bifurcations in various ranges of parameters. © 2022 Roostaei et al. This is an open access article distributed under the terms of the Creative Commons Attribution... 

    Pemphigus vulgaris and infections: A retrospective study on 155 patients

    , Article Autoimmune Diseases ; Volume 2013 , 2013 ; 20900430 (ISSN) Esmaili, N ; Mortazavi, H ; Noormohammadpour, P ; Boreiri, M ; Soori, T ; Vasheghani Farahani, I ; Mohit, M ; Sharif University of Technology
    2013
    Abstract
    Background. Autoimmune process and immunosuppressive therapy of pemphigus vulgaris would predispose the patients to infections. Aim. We aimed to study the prevalence of infection and pathogenic agents in pemphigus vulgaris patients admitted to dermatology service. Material and methods. This retrospective study was conducted on 155 pemphigus vulgaris patients (68 males, 87 females) admitted to dermatology service between 2009 and 2011. In this study, the diagnosis of pemphigus vulgaris was confirmed by light microscopic and direct immunofluorescence findings. Data were collected through a questionnaire. Results. Of 155 pemphigus vulgaris patients, 33 had infection at admission and 9 acquired... 

    Global analysis of an SAIS model

    , Article Journal of Biological Dynamics ; Volume 6, Issue 2 , 2012 , Pages 457-474 ; 17513758 (ISSN) Razvan, M. R ; Yasaman, S ; Sharif University of Technology
    2012
    Abstract
    This paper is concerned with global analysis of an SAIS epidemiological model in a population of varying size introduced by Busenberg and van den Driessche. In this model the population is divided into three subgroups of susceptible, asymptomatic and infective individuals. It has been shown that this system has no periodic solutions and all its trajectories tend to the equilibria of the system. We use the Poincaré Index theorem to determine the number of the equilibria and their stability properties. We have shown that bistability occurs for suitable values of parameters and found a set of examples of all possible dynamics of the system  

    Emergence of synergistic and competitive pathogens in a coevolutionary spreading model

    , Article Physical Review E ; Volume 105, Issue 3 , 2022 ; 24700045 (ISSN) Ghanbarnejad, F ; Seegers, K ; Cardillo, A ; Hövel, P ; Sharif University of Technology
    American Physical Society  2022
    Abstract
    Cooperation and competition between pathogens can alter the amount of individuals affected by a coinfection. Nonetheless, the evolution of the pathogens' behavior has been overlooked. Here, we consider a coevolutionary model where the simultaneous spreading is described by a two-pathogen susceptible-infected-recovered model in an either synergistic or competitive manner. At the end of each epidemic season, the pathogens species reproduce according to their fitness that, in turn, depends on the payoff accumulated during the spreading season in a hawk-and-dove game. This coevolutionary model displays a rich set of features. Specifically, the evolution of the pathogens' strategy induces abrupt... 

    On the operating rooms ventilation system

    , Article 12th International Conference on Indoor Air Quality and Climate 2011 ; Volume 4 , 2011 , Pages 3194-3199 ; 9781627482721 (ISBN) Sajadi, B ; Ahmadi, G ; Saidi, M. H ; Sharif University of Technology
    Abstract
    Surgical site infection (SSI) is one of the important infectious problems in hospitals. It is well known that appropriate ventilation strategy is most effective way to control bacteria-carrying airborne particles responsible for SSI. With considerable improvement in the computational capacity of computers, computational fluid dynamics (CFD) technique has been widely used to study the indoor airflow and contaminant dispersion over the enclosures. In this research, the effect of inlet air velocity on the ultra-clean ventilation system performance is investigated Eulerian-Lagrangian numerical approach. The results show that surgical wound contamination may be highly affected by inlet velocity.... 

    Surface modifications of titanium implants by multilayer bioactive coatings with drug delivery potential: antimicrobial, biological, and drug release studies

    , Article JOM ; Volume 68, Issue 4 , 2016 , Pages 1100-1108 ; 10474838 (ISSN) Ordikhani, F ; Petrova Zustiak, S ; Simchi, A ; Sharif University of Technology
    Abstract
    Recent strategies to locally deliver antimicrobial agents to combat implant-associated infections—one of the most common complications in orthopedic surgery—are gaining interest. However, achieving a controlled release profile over a desired time frame remains a challenge. In this study, we present an innovative multifactorial approach to combat infections which comprises a multilayer chitosan/bioactive glass/vancomycin nanocomposite coating with an osteoblastic potential and a drug delivery capacity. The bioactive drug-eluting coating was prepared on the surface of titanium foils by a multistep electrophoretic deposition technique. The adopted deposition strategy allowed for a high... 

    Modeling the probability distribution of the bacterial burst size via a game-theoretic approach

    , Article Journal of Bioinformatics and Computational Biology ; Volume 16, Issue 4 , 2018 ; 02197200 (ISSN) Malekpour, S. A ; Pakzad, P ; Foroughmand Araabi, M. H ; Goliaei, S ; Tusserkani, R ; Goliaei, B ; Sadeghi, M ; Sharif University of Technology
    World Scientific Publishing Co. Pte Ltd  2018
    Abstract
    Based on previous studies, empirical distribution of the bacterial burst size varies even in a population of isogenic bacteria. Since bacteriophage progenies increase linearly with time, it is the lysis time variation that results in the bacterial burst size variations. Here, the burst size variation is computationally modeled by considering the lysis time decisions as a game. Each player in the game is a bacteriophage that has initially infected and lysed its host bacterium. Also, the payoff of each burst size strategy is the average number of bacteria that are solely infected by the bacteriophage progenies after lysis. For calculating the payoffs, a new version of ball and bin model with... 

    Exact solution of generalized cooperative susceptible-infected-removed (SIR) dynamics

    , Article Physical Review E ; Volume 100, Issue 1 , 2019 ; 24700045 (ISSN) Zarei, F ; Moghimi Araghi, S ; Ghanbarnejad, F ; Sharif University of Technology
    American Physical Society  2019
    Abstract
    In this paper, we introduce a general framework for coinfection as cooperative susceptible-infected-removed (SIR) dynamics. We first solve the SIR model analytically for two symmetric cooperative contagions [L. Chen, Europhys. Lett. 104, 50001 (2013)10.1209/0295-5075/104/50001] and then generalize and solve the model exactly in the symmetric scenarios for three and more cooperative contagions. We calculate the transition points and order parameters, i.e., the total number of infected hosts. We show that the behavior of the system does not change qualitatively with the inclusion of more diseases. We also show analytically that there is a saddle-node-like bifurcation for two cooperative SIR... 

    Exact Solution of Generalized Cooperative SIR Dynamics

    , M.Sc. Thesis Sharif University of Technology Zarei, Fatemeh (Author) ; Moghimi Araghi, Saman (Supervisor) ; Ghanbarnejad, Fakhteh (Co-Supervisor)
    Abstract
    Epidemics are one of the most important issues in social environments, economics systems, medicine, and other environments. In the study of the epidemics, some behaviors have been observed that are very similar to the phase transition in critical systems. For example, by changing the parameters that the epidemics process is characterized, the system’s epidemic behavior changes. Depending on the type of problem, this behavior change may be similar to continuous or discontinuous phase transitions. One of the fascinating issues that have just been taken into consideration in this area is the cooperation of two or more diseases. This means that the rate of transmission of a disease depends on... 

    Computer modeling of the operating room ventilation performance in connection with surgical site infection

    , Article Scientia Iranica ; Volume 27, Issue 2 , 2020 , Pages 704-714 Sajadi, B ; Saidi, M. H ; Ahmadi, G ; Sharif University of Technology
    Sharif University of Technology  2020
    Abstract
    The primary source of surgical site infection is the deposition of flakes released from the exposed skin of surgical staff or the patient on the exposed surgical wound. In this study, a computational model for simulating air ow and thermal conditions in an operating room is developed, and transport and deposition of particulate contaminants near the wound are analyzed. The results show the formation of a thermal plume over the wound tissue, which is typically at a higher temperature than the surrounding. The thermal plume protects the wound from the deposition of contaminants. In addition, the computational model predicts an optimum value for the inlet air velocity that is mainly maintaining... 

    Solving Delayed SIRS Meanfield Model on Homogeneous Networks

    , M.Sc. Thesis Sharif University of Technology Saeedghalati, Mohammad Karim (Author) ; Ejtehadi, Mohammad Reza (Supervisor)
    Abstract
    In this work we simulate SIRS1 model on homogeneous networks by means of simulation, then we drove meanfield equations for this model and compared the solution of these equations to the simulations results on the network. To obtain a new model closer to the reality, we modified the SIRS model and introduce history to the convenient model. After simulation of this model we redrove the equations with history and found that this model can show bifurcation so we found the phase diagram for this model. And in the last part we introduced history to a meanfield model with pair approximation and drove the equations and try to solve
    them numerically.
     

    HAP/Agar Nanocarriers for Bone Anti-infection Drug

    , M.Sc. Thesis Sharif University of Technology Ghazagh, Parisa (Author) ; Frounchi, Masood (Supervisor)
    Abstract
    Successful treatment of bone infections is a major orthopedic challenge due to the physiological and anatomical features of bone. In this project, we prepared a drug delivery system with injectable and biodegradable polysaccharide agar containing alginate, polyvinyl alcohol and hydroxyapatite nanocarriers composite microspheres. Alginate and polyvinyl alcohol composite microspheres are crosslinked by calcium and freeze-thawing technique. Using the freeze thawing process for polyvinyl alcohol crosslinking, in addition to alginate crosslinking, improved hydrogel swelling behavior and enhanced drug loading and thus slowed drug release, drug loading increased with increasing PVA percentage from ... 

    Fiscal Measures and the Infection Rate of Covid-19

    , M.Sc. Thesis Sharif University of Technology Jafari, Mohammad Hossein (Author) ; Mahmudzadeh, Amineh (Supervisor) ; Nili, Masoud (Supervisor)
    Abstract
    Have the government financial measures during the outbreak of the COVID-19 influenced reducing the rate of the disease? To answer this question, in the present research, the effect of direct spending by governments to deal with the disease on reducing the infection rate in different countries has been estimated. This study has been carried out using a cross-sectional data bank collected from various sources of the World Bank and Oxford University. In order to eliminate the effect of vaccination, the focus of this study is on the financial measures and infection rates in 2020.It has been shown herein that there is a positive correlation between the increase in government intervention in the... 

    Carbosilane dendrimers: Drug and gene delivery applications

    , Article Journal of Drug Delivery Science and Technology ; Volume 59 , 2020 Rabiee, N ; Ahmadvand, S ; Ahmadi, S ; Fatahi, Y ; Dinarvand, R ; Bagherzadeh, M ; Rabiee, M ; Tahriri, M ; Tayebi, L ; Hamblin, M. R ; Sharif University of Technology
    Editions de Sante  2020
    Abstract
    Carbosilane dendrimers are a particular type of dendrimer structure that has been used as delivery vehicles for drugs and nucleic acids. They have a defined structure according to their generation number, and their terminal groups can be rendered cationic or anionic. The cationic charges can address the limitation of electrostatic repulsion between the negatively charged phosphate groups of nucleic acids and negatively charged cell membranes. Specific drugs can be loaded into the central part of the dendrimer or attached at the exterior, and the overall positive charge may improve the efficacy of anti-inflammatory drugs. One promising feature of dendrimers is their non-toxicity both in vitro... 

    Effects of measures on phase transitions in two cooperative susceptible-infectious-recovered dynamics

    , Article Physical Review E ; Volume 105, Issue 3 , 2022 ; 24700045 (ISSN) Khazaee, A ; Ghanbarnejad, F ; Sharif University of Technology
    American Physical Society  2022
    Abstract
    In recent studies, it has been shown that a cooperative interaction in a co-infection spread can lead to a discontinuous transition at a decreased threshold. Here, we investigate the effects of immunization with a rate proportional to the extent of the infection on phase transitions of a cooperative co-infection. We use the mean-field approximation to illustrate how measures that remove a portion of the susceptible compartment, like vaccination, with high enough rates can change discontinuous transitions in two coupled susceptible-infectious-recovered dynamics into continuous ones while increasing the threshold of transitions. First, we introduce vaccination with a fixed rate into a... 

    Antibacterial Ti–Cu implants: A critical review on mechanisms of action

    , Article Materials Today Bio ; Volume 17 , 2022 ; 25900064 (ISSN) Mahmoudi, P ; Akbarpour, M. R ; Lakeh, H. B ; Jing, F ; Hadidi, M. R ; Akhavan, B ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    Titanium (Ti) has been widely used for manufacturing of bone implants because of its mechanical properties, biological compatibility, and favorable corrosion resistance in biological environments. However, Ti implants are prone to infection (peri-implantitis) by bacteria which in extreme cases necessitate painful and costly revision surgeries. An emerging, viable solution for this problem is to use copper (Cu) as an antibacterial agent in the alloying system of Ti. The addition of copper provides excellent antibacterial activities, but the underpinning mechanisms are still obscure. This review sheds light on such mechanisms and reviews how incorporation of Cu can render Ti–Cu implants with... 

    Effects of Temporal Correlations on Co-infection

    , M.Sc. Thesis Sharif University of Technology Sajjadi, Ebrahim (Author) ; Ejtehadi, Mohammad Reza (Supervisor) ; Ghanbarnejad, Fakhteh (Co-Supervisor)
    Abstract
    SIS and SIR are common models for describing and predicting the epidemics of the contagious diseases. But these models fail to predict patterns of spreading dynamics in the case of co-infective diseases, i.e. getting infected by one disease, alters the chance of getting infected by the other one. Coinfection has been studied in the mean field approximation and on complex networks with different topologies. Another study shows temporal correlations of the underlying transmission network, play role on co-infection dynamics.In this research we investigate the effects of various temporal correlation on epidemic order parameters of independent infection and co-infection.For this purpose, we... 

    Nonlinear adaptive control method for treatment of uncertain hepatitis B virus infection

    , Article Biomedical Signal Processing and Control ; Volume 38 , 2017 , Pages 174-181 ; 17468094 (ISSN) Aghajanzadeh, O ; Sharifi, M ; Tashakori, S ; Zohoor, H ; Sharif University of Technology
    Abstract
    In this paper, a nonlinear adaptive control method is presented for the treatment of the Hepatitis B Virus (HBV) infection. Nonlinear dynamics of the HBV, modeling uncertainties and three state variables (the numbers of uninfected and infected cells and free viruses) are taken into account. The proposed control law is designed for the antiviral drug input such that the number of free viruses and consequently the number of infected cells decrease to the desired values. An adaptation law is also presented to overcome modeling uncertainties by updating estimations of the system parameters during the treatment period. The stability of the process and convergence to desired state values are... 

    Ag-incorporated biodegradable Mg alloys

    , Article Materialia ; Volume 23 , 2022 ; 25891529 (ISSN) Mohammadi Zerankeshi, M ; Alizadeh, R ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    Biodegradable magnesium implants possess excellent mechanical properties and biocompatibility, which make them suitable candidates to be employed as temporary structures for the bone regeneration purposes. However, there are still important challenges which limit their extensive use in biomedical applications, where the most important ones include implant-associated infection, rapid degradation rate and the need for improved mechanical properties. Silver, which is a strong antimicrobial agent, has been extensively used for improving the mentioned challenges in biodegradable Mg alloys either as alloying element or incorporation in the protective coating. Ag addition has been reported to have... 

    Telemedicine and computer-based technologies during coronavirus disease 2019 infection; a chance to educate and diagnose

    , Article Archives of Iranian Medicine ; Volume 23, Issue 8 , 2020 , Pages 561-563 Jafarzadeh Esfehani, R ; Mirzaei Fard, M ; Habibi Hatam Ghale, F ; Rezaei Kalat, A ; Fathi, A ; Shariati, M ; Sadr Nabavi, A ; Miri, R ; Bidkhori, H. R ; Aelami, M. H ; Sharif University of Technology
    Academy of Medical Sciences of I.R. Iran  2020
    Abstract
    Coronavirus disease 2019 (COVID-19) is now of global concern due to its rapid dissemination across the globe. The rapid spread of this viral infection, along with many of its unknown aspects, has posed new challenges to the health care systems. The main challenging effects of COVID-19 are rapid dissemination through close contact and varying clinical severity among different individuals. Furthermore, the medical staff in endemic areas are becoming exhausted and deal with a considerable level of job burnout, which can negatively affect their medical decision making. Also, due to the variable pulmonary manifestations of COVID-19, some physicians may misdiagnose patients. To overcome these...