Sharif Digital Repository

We have performed molecular dynamics simulation on B-DNA duplex (CGCGAATTGCGC) at different temperatures. The DNA was immerged in a salt-water medium with 1 M NaCl concentration to investigate salt effect on the denaturation process. At each temperature, configurational entropy is estimated using the covariance matrix of atom-positional fluctuations, from which the melting temperature (T m) was found to be 349 K. The calculated configuration entropy for different bases shows that the melting process involves more peeling (including fraying from the ends) conformations, and therefore the untwisting of the duplex and peeling states form the transition state of the denaturation process. There... 

In salting-out liquid-liquid extraction (SALLE) technique, water-miscible organic solvents are used for extraction of polar analytes from saline solutions. In this study, for the first time, a coupled 1-mL syringes system was utilized to perform a miniaturized SALLE method. Sulfanilamide antibiotic was extracted and determined via the developed method followed by high performance liquid chromatography-ultraviolet detection (HPLC-UV). The extraction process was carried out by rapid shooting of acetonitrile as extraction solvent (syringe B) into saline aqueous sample solution (syringe A), and then the shooting was repeated several times at a rate of 1 cycle s-1. Thereby, an extremely large... 

A novel full-polysaccharide hydrogel was prepared by crosslinking of chitosan with periodate-oxidized sucrose. A tetraaldehyde molecule is synthesized via periodate oxidation of sucrose and then applied as a crosslinking agent to form a new hydrogel network. A mechanism for the superabsorbent hydrogel formation via reductive N-alkylation was also suggested. The structure of the hydrogel was confirmed by FTIR spectroscopy, scanning electron microscopy (SEM), and thermogravimetric analysis (TGA). It is shown that crosslinking of chitosan can improve its thermal stability. The effects of crosslinker concentration, pH, and inorganic salt on the swelling behavior of the hydrogel were studied. The...