Loading...
Search for:
intron
0.005 seconds
A novel pattern matching algorithm for genomic patterns related to protein motifs
, Article Journal of Bioinformatics and Computational Biology ; Volume 18, Issue 1 , 2020 ; Goliaei, S ; Goliaei, B ; Sharif University of Technology
World Scientific Publishing Co. Pte Ltd
2020
Abstract
Patterns on proteins and genomic sequences are vastly analyzed, extracted and collected in databases. Although protein patterns originate from genomic coding regions, very few works have directly or indirectly dealt with coding region patterns induced from protein patterns. Results: In this paper, we have defined a new genomic pattern structure suitable for representing induced patterns from proteins. The provided pattern structure, which is called "Consecutive Positions Scoring Matrix (CPSSM)", is a replacement for protein patterns and profiles in the genomic context. CPSSMs can be identified, discovered, and searched in genomes. Then, we have presented a novel pattern matching algorithm...