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microtubules
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Dynamic information of the time-dependent tobullian biomolecular structure using a high-accuracy size-dependent theory
, Article Journal of Biomolecular Structure and Dynamics ; 2020 ; Shamsodin, M ; Wang, H ; NoormohammadiArani, O ; Mashood Khan, A ; Habibi, M ; Al Furjan, M. S. H ; Sharif University of Technology
Taylor and Francis Ltd
2020
Abstract
As the most rigid cytoskeletal filaments, tubulin–labeled microtubules bear compressive forces in living cells, balancing the tensile forces within the cytoskeleton to maintain the cell shape. The current structure is often under several environmental conditions as well as various dynamic or static loads that can decrease the stability of the viscoelastic tubulin–labeled microtubules. For this issue, the dynamic stability analysis of size-dependent viscoelastic tubulin–labeled microtubules using modified strain gradient theory by considering the exact three-length scale parameter. Viscoelastic properties are modeled using Kelvin-Voight model to study the time-dependent tubulin–labeled...
Three dimensional modeling of axonal microtubules
, Article 2014 21st Iranian Conference on Biomedical Engineering, ICBME 2014, 26 November 2014 through 28 November 2014 ; November , 2014 , Pages 298-302 ; 9781479974177 (ISBN) ; Shamloo, A ; Sharif University of Technology
Institute of Electrical and Electronics Engineers Inc
2014
Abstract
Axon is a filament in neuronal system and axonal microtubules are bundles in axons. In axons, microtubules are coated with microtubule-associated protein tau, a natively unfolded profuse filamentous protein in the central nervous system. These proteins are responsible for the cross-linked structure of the axonal microtubule bundles. Through complimentary dimerization with other tau proteins, bridges are formed to nearby microtubules to create bundles. The transverse reinforcement of microtubules by cross-linking to the cytoskeleton has been shown to enhance their ability to bear compressive loads. Though microtubules are conventionally regarded as bearing compressive loads, in certain...
Unbinding of kinesin from microtubule in the strongly bound states enhances under assisting forces
, Article Molecular Informatics ; Volume 37, Issue 4 , April , 2018 ; 18681743 (ISSN) ; Naseri, S ; Zhong, Y ; Liew, A. W. C ; Sharif University of Technology
Wiley-VCH Verlag
2018
Abstract
The ability to predict the cellular dynamics of intracellular transport has enormous potential to impact human health. A key transporter is kinesin-1, an ATP-driven molecular motor that shuttles cellular cargos along microtubules (MTs). The dynamics of kinesins depends critically on their unbinding rate from MT, which varies depending on the force direction applied on the motor, i.e. the force-unbinding rate relation is asymmetric. However, it remains unclear how changing the force direction from resisting (applied against the motion direction) to assisting (applied in the motion direction) alters the kinesin's unbinding and stepping. Here, we propose a theoretical model for the influence of...
Effective potential of longitudinal interactions between microtubule protofilaments
, Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 78, Issue 1 , 2008 ; 15393755 (ISSN) ; Hamedani Radja, N ; Ejtehadi, M. R ; Sharif University of Technology
2008
Abstract
An effective potential for longitudinal interactions between adjacent protofilaments in a microtubule is introduced. Our proposed interaction potential is a periodic and continuous function of the offset between two protofilaments, which also incorporates the bending energy of protofilaments. This potential produces the results of atomistic simulations. Further, using the potential, a Monte Carlo simulation gives results for the skew angles of observed structures that are in good agreement with experiments. © 2008 The American Physical Society
Application of exact continuum size-dependent theory for stability and frequency analysis of a curved cantilevered microtubule by considering viscoelastic properties
, Article Engineering with Computers ; 2020 ; Habibi, M ; Tounsi, A ; Safarpour, H ; Safa, M ; Sharif University of Technology
Springer
2020
Abstract
The stability analysis of cantilevered curved microtubules in axons regarding various size elements and using the generalized differential quadrature method for solving equations is reported. The impacts of covering MAP Tau proteins along with cytoplasm are taken into account as the elastic medium. Curved cylindrical nanoshell considering thick wall is used to model the microtubules. The factor of length scale (l/R = 0.2) used in modified couple stress theory would result in more accuracy when it comes to comparison with experiments, while alternative theories presented in this paper provide less precise outcomes. Due to the reported precise results, at the lower value of the time-dependent...
Directional migration and differentiation of neural stem cells within three-dimensional microenvironments
, Article Integrative Biology (United Kingdom) ; Volume 7, Issue 3 , Jan , 2015 , Pages 335-344 ; 17579694 (ISSN) ; Heibatollahi, M ; Mofrad, M. R. K ; Sharif University of Technology
Royal Society of Chemistry
2015
Abstract
Harnessing neural stem cells to repair neuronal damage is a promising potential treatment for neuronal diseases. To enable future therapeutic efficacy, the survival, proliferation, migration and differentiation of neural stem/progenitor cells (NPCs) should be accurately studied and optimized in in vitro platforms before transplanting these cells into the body for treatment purposes. Such studies can determine the appropriate quantities of the biochemical and biomechanical factors needed to control and optimize NPC behavior in vivo. In this study, NPCs were cultured within a microfluidic device while being encapsulated within the collagen matrix. The migration and differentiation of NPCs were...
A viscoelastic model for axonal microtubule rupture
, Article Journal of Biomechanics ; Volume 48, Issue 7 , 2015 , Pages 1241-1247 ; 00219290 (ISSN) ; Manuchehrfar, F ; Rafii Tabar, H ; Sharif University of Technology
Elsevier Ltd
2015
Abstract
Axon is an important part of the neuronal cells and axonal microtubules are bundles in axons. In axons, microtubules are coated with microtubule-associated protein tau, a natively unfolded filamentous protein in the central nervous system. These proteins are responsible for cross-linking axonal microtubule bundles. Through complimentary dimerization with other tau proteins, bridges are formed between nearby microtubules creating bundles. Formation of bundles of microtubules causes their transverse reinforcement and has been shown to enhance their ability to bear compressive loads. Though microtubules are conventionally regarded as bearing compressive loads, in certain circumstances during...
Review on alzheimer's disease: inhibition of amyloid beta and tau tangle formation
, Article International Journal of Biological Macromolecules ; Volume 167 , 2021 , Pages 382-394 ; 01418130 (ISSN) ; Hadi Zadeh, E ; Hasan Khan, R ; Sharif University of Technology
Elsevier B.V
2021
Abstract
It is reported that approximately 40 million people are suffering from dementia, globally. Dementia is a group of symptoms that affect neurons and cause some mental disorders, such as losing memory. Alzheimer's disease (AD) which is known as the most common cause of dementia, is one of the top medical care concerns across the world. Although the exact sources of the disease are not understood, is it believed that aggregation of amyloid-beta (Aβ) outside of neuron cells and tau aggregation or neurofibrillary tangles (NFTs) formation inside the cell may play crucial roles. In this paper, we are going to review studies that targeted inhibition of amyloid plaque and tau protein tangle formation,...