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Modeling of Nerve System by Differential Equations Theory
, M.Sc. Thesis Sharif University of Technology ; Fotuhi, Morteza (Supervisor)
Abstract
In this thesis, behavior of a single neuron and a collection of neurons, has modeled by using ordinary differential equation techniques. In modeling of a single neuron, cell’s potential and parameters related to ion’s are variables of differential equation. Often some of this variables change very faster than the others. That causes using small perturbation methods in modeling. The Hodgkin-hoxley equations identified as main model and its reduced models used in thesis. In modeling of a network of neurons, there are also synaptic and neuron variables and also they change in different speeds, too. That again leads us to small perturbation theory. Synapses are hyperpolarizing and depolarizing....
Computational Modeling of Axonal Microtubule and Study the Effect of Cytoplasm on It under the Tension
, M.Sc. Thesis Sharif University of Technology ; Shamloo, Amir (Supervisor)
Abstract
Axon is an important part of the neuronal cells and axonal microtubules are bundles in axons.In axons, microtubules are coated with microtubule-associated protein tau, a natively unfolded filamentous protein in the central nervous system. These proteins are responsible for cross-linking axonal microtubule bundles. Through complimentary dimerization with other tau proteins, bridges are formed between nearby microtubules creating bundles. Formation of bundles of microtubules causes their transverse reinforcement and has been shown to enhance their ability to bear compressive loads. Though microtubules are conventionally regarded as bearing compressive loads, in certain circumstances such as in...
Design and Fabrication of Nanocamposite Scaffold for Neural Tissue Engineering
, M.Sc. Thesis Sharif University of Technology ; Ramazani Saadat Abadi , Ahmad (Supervisor) ; Neamati, ZiaratAli (Supervisor)
Abstract
Nervous system plays an intricate biological process of man body.Damage of nervous system has serious consequences and is hard to recover, as well as the other parts of the body may not work properly. Many strategies have been used to repair spinal cord injuries in which the main objective is to improve the regeneration of axons and functional recovery. The purpose of this research is introducing neural tissue engineering concepts (e.g. scaffolds, stimulation and etc.) and also design and fabrication suitable for neural tissue engineering. For this purpose the combination of biodegradable polymers (chitosan),conductive polymer (poly-aniline) and carbon nanosheets (graphene) was chosen as the...
Dynamics of Delayed Neuronal Systems
, Ph.D. Dissertation Sharif University of Technology ; Razvan, Mohammad Reza (Supervisor)
Abstract
This thesis presents an investigation of the dynamics of two coupled non-identical FitzHugh–Nagumo neurons. It is known that signal transmission in coupled neurons is not instantaneous in general, and time delay is inevitable in signal transmission for real neurons. Therefore we consider the system of two coupled neurons with delayed synaptic connection. We consider coupling strength and time delay as bifurcation parameters, and try to classify all possible dynamics which is fairly rich and we will study the excitability of the neurons. By bifurcation study of the system the coupling strength and delay-dependent stability regions are illustrated in the parameter plane, to describe typical...
Design an Artificial Neural Structure by Using Mirror Neurons for Implementing the Ink Drop Spread (I.D.S) Operator in Active Learning Method Algorithm
, M.Sc. Thesis Sharif University of Technology ; Bagheri Shouraki, Saeed (Supervisor)
Abstract
In this research, a study on Mirror Neuron and Active learning method was done based on the human capability of using their past knowledge in order to understand new systems faster and with more accuracy. Mirror ALM, A new modeling technique based on ALM was proposed that is capable of merging the IDS planes of an old system in order to improve the output of the modeling for a new system. This new technique was tested on a 3D function, state estimation of an inverted pendulum and finally in control procedure of an inverted pendulum. The results of the tests were compared with the classic ALM method to recognize the advantages and disadvantages of the introduced method. The results showed...
Processing the Local Field Potential Signals in Comparison to Neighboring Simple and Complex Neurons of Primary Visual Cortex
, M.Sc. Thesis Sharif University of Technology ; Lashgari, Reza (Supervisor)
Abstract
In neural systems of living organism, moreover than differences in anatomic structure of cells, there is also differences in physiological functions of analogous cells.Specification and categorization of neurons based on physiological functions is one of objectives of neuroscience. Study of cognitive behaviors and systematic study of neural system, modeling and practical applications in neural prosthesis design are some of applications of categorizing neural cells. Neural signals can be studied by Spike rate of a single neuron activity or Local Field Potential (LFP) of a finite number of neurons. In previous studies neurons of first visual cortex are divided into two groups of simple and...
Modeling Neural Systems with a Group of Dissipative Rotators
, M.Sc. Thesis Sharif University of Technology ; Moghimi-Araghi, Saman (Supervisor)
Abstract
Neural systems are the threshold ones. It means if the electrical potential passed through a specific amount then they could spike and cause the activity of other cells. The models that really mimic the action of neurons are usually complicated and are not suitable when you put them on a network to study the collective behavior of the neurons. Simple threshold models have been designed for such purposes. One on most studied ones is the ’integrate and fire’ model, in which cells integrate the inputs until the threshold potential and then spike. usually, a network of these objects are simulated and different properties of such network are investigated.However, this model has some shortcomings...
Statistical Mechanics of The Neocortex
, M.Sc. Thesis Sharif University of Technology ; Bahraini, Alireza (Supervisor)
Abstract
In this paper, the field theory tools will be used to study none-equilibrium statistical processes and eventually analyze the dynamic of the neocortex. Assuming the neocortex is Markovian, a model is proposed which contains fluctuations of the neuron activities as well as response to the stimulations. The experimental data shows that the fluctuation and correlation have a vital impact on the dynamics of the cortex, and many of its characteristics can only be justified by it.The paper will study the model that considers correlations and fluctuations to reach a more accurate evaluation of the cortex than the mean field approximation
Synchronization in Inhibitory Neural Networks
, M.Sc. Thesis Sharif University of Technology ; Moghimi Araghi, Saman (Supervisor)
Abstract
Centuries passed and the human knew himself as the protagonist who searches around nature and discovers the phenomena. But after the birth of ``neuroscience", his wisdom and the process of reasoning were also added to the list of uncovered subjects. Since its arrival, many scientists started investigating ``reasoning", "sleep", ``memory disorders" etc. with a such framework. One of the main branches of this stream is the ``Synchronization" problem when the neurons get synced in the matter of spiking likelihood. ``Synchronization" means a lot to the community, because it is said that it is one major symptom of Epilepsy. With that said, we need to get to the root of this effect. It seems...