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    Directed Evolution of the Asparaginase Enzyme to Alter Substrate Specificity

    , M.Sc. Thesis Sharif University of Technology Yousefi, Danial (Author) ; Kalhor, Hamid Reza (Supervisor)
    Abstract
    Asparagainase is a therapeutic enzyme which has been a subject of research for decades. The enzyme catalyzes the hydrolysis of the amide group in asparagine and similar amides. Altering the substrate specificity and stabilization of this enzyme can increase its therapeutic properties. Moreover, asparaginases may be evolved to catalyze the hydrolysis of other similar compounds. These can be achieved through directed evolution and computational methods.In this study, the gene encoding L-asparaginase II enzyme from E. coli was amplified by polymerase chain reaction (PCR) and was cloned into an expression vector. The recombinant protein was expressed by an appropriate host secreting the... 

    Molecular Engineering of Recombinant Human Transglutaminase 2 with Correct Folding ( Soluble ) for Studying Promiscuous Organic Reactions

    , M.Sc. Thesis Sharif University of Technology Gholami, Amir Hossein (Author) ; Kalhor, Hamid Reza (Supervisor)
    Abstract
    Transglutaminases of family enzymes are implicated in different functions in cell including cellular division and cell adhesion. Several members of this family catalyze formation of isopeptide bond that involved in wound restoration and angiogenesis. Transglutaminase 2 that have been studied in this project, are found in almost every human cell tissue. This enzyme has multiple functions depending on its cell location. In cytoplasm TG2 act as GTPase and is involve in post translational modifications. This enzyme by using calcium form a isopeptide bond between two proteins, isopeptide bond is function in brain cortex and cells creates amyloid structures that including brain diseases, Parkinson... 

    Nano reengineering of horseradish peroxidase with dendritic macromolecules for stability enhancement

    , Article Enzyme and Microbial Technology ; Volume 50, Issue 1 , 2012 , Pages 10-16 ; 01410229 (ISSN) Khosravi, A ; Vossoughi, M ; Shahrokhian, S ; Alemzadeh, I ; Sharif University of Technology
    Abstract
    A simple bio-conjugation procedure to surround a single horseradish peroxidase (HRP) enzyme molecule with dendritic polyester macromolecules (polyester-32-hydroxyl-1-carboxyl bis-MPA dendron, generation 5) was proposed. The characterization of resultant nanoparticles entitled HRP dendrozyme, was performed by transmission electron microscopy, dynamic light scattering, gel permeation chromatography and Fourier transform infrared spectroscopy. The results showed that HRP nanoparticles were spherical in shape and have an average size of 14 ± 2. nm in diameter. Furthermore, bio-conformational characterization of HRP dendrozyme was performed by means of circular dichroism and fluorescence...