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    Application of the Taguchi method to optimize the process conditions in the production of lipase by Pseudomonas aeroginosa B-3556

    , Article Iranian Journal of Science and Technology, Transaction B: Engineering ; Volume 29, Issue 5 , 2005 , Pages 475-482 ; 03601307 (ISSN) Sabbaghian, E. S ; Roostaazad, R ; Sharif University of Technology
    2005
    Abstract
    Pseudomonas aeoroginosa B-3556 was grown on soy flour based semi-solid media for lipase production. The effect of different factors including medium composition, pH, temperature, mixing intensity and substrate particle size on lipase productivity was analyzed using the Taguchi method in three steps. Based on these analyses the optimum concentrations of soy flour, (NH4)2HPO4, K2HPO4 and MgSO4.7H2O were found be 3%, 3%, 0.5% and 0.21% respectively. Furthermore, optimum values for temperature, pH and the shaking speed were determined as 30°C, 7.1 and 150 rpm. As for the substrate particle size, the best result was achieved when the soy flour had a mesh size cut of 60-70. The influence of the... 

    , M.Sc. Thesis Sharif University of Technology Ebadipour, Nagisa (Author) ; Roosta Azad, Reza (Supervisor) ; Yaghmaei, Soheyla (Co-Advisor) ; Bagheri, Tayyebeh (Co-Advisor)
    Abstract
    Biosurfactants are surface active compounds capable of reducing surface tension and interfacial surface tension. Biosurfactants are produced by a variety of microorganisms. They are promising replacements for chemical surfactants because of biodegradability, non-toxicity and being able to produce from renewable sources. However a major problem of producing biosurfactant in industrial level is their production cost. In this research, by using corn steep liquor as low-cost nitrogen source besides other nitrogen sources, not only production cost reduced but also a higher efficiency achieved. Therefore optimization of biosurfactant production was done by RSM and Box- Behnken method. Results... 

    Statistical screening of medium components for recombinant production of Pseudomonas aeruginosa ATCC 9027 rhamnolipids by nonpathogenic cell factory pseudomonas putida KT2440

    , Article Molecular Biotechnology ; Vol. 56, issue. 2 , 2014 , p. 175-191 Setoodeh, P ; Jahanmiri, A ; Eslamloueyan, R ; Niazi, A ; Ayatollahi, S. S ; Aram, F ; Mahmoodi, M ; Hortamani, A ; Sharif University of Technology
    Abstract
    Rhamnolipids (RLs) produced by the opportunistic human pathogen Pseudomonas aeruginosa are considered as potential candidates for the next generation of surfactants. Large-scale production of RLs depends on progress in strain engineering, medium design, operating strategies, and purification procedures. In this work, the rhlAB genes extracted from a mono-RLs-producing strain of P. aeruginosa (ATCC 9027) were introduced to an appropriate safety host Pseudomonas putida KT2440. The capability of the recombinant strain was evaluated in various media. As a prerequisite for optimal medium design, a set of 32 experiments was performed in two steps for screening a number of macro-nutritional... 

    Asphaltenes biodegradation under shaking and static conditions

    , Article Fuel ; Vol. 117, issue. PART A , 2014 , pp. 230-235 ; ISSN: 00162361 Jahromi, H ; Fazaelipoor, M. H ; Ayatollahi, S ; Niazi, A ; Sharif University of Technology
    Abstract
    In this study the biodegradability of asphaltenes was investigated using four bacterial consortia isolated from oil contaminated soils and sludge. The species in consortium 1 were identified as Pseudomonas aeruginosa and Pseudomonas fluorescens. Consortium 2 contained Citrobacter amalonaticus and Enterobacter cloacae. Consortium 3 contained only one species identified as Staphylococcus hominis, and the species in consortium 4 were identified as Bacillus cereus, and Lysinibacillus fusiformis. Spectrophotometry at 281 nm wavelength was applied to quantify asphaltenes biodegradation. The biodegradation tests were performed in flasks with the initial asphaltenes concentrations of 2, 4, 10, 20,... 

    Development of a sensitive diagnostic device based on zeolitic imidazolate frameworks-8 using ferrocene-graphene oxide as electroactive indicator for pseudomonas aeruginosa detection

    , Article ACS Sustainable Chemistry and Engineering ; Volume 7, Issue 15 , 2019 , Pages 12760-12769 ; 21680485 (ISSN) Shahrokhian, S ; Ranjbar, S ; Sharif University of Technology
    American Chemical Society  2019
    Abstract
    Since Gram-negative bacteria have a predominant role in nosocomial infections, there are high demands to develop a fast and sensitive method for diagnosis of bacteria in clinical samples. To address this challenge, we designed a novel electrochemical biosensor based on aptamers immobilized in engineered zeolitic imidazolate Framework-8 (ZIFs-8) via EDC-NHS chemistry. Cyclic voltammetry and electrochemical impedance spectroscopy techniques were conducted to monitor the electrochemical characterization. With respect to unique π-πinteractions between aptamer and graphene oxide (GO), the differential pulse voltammetry technique was applied with ferrocene-graphene oxide (Fc-GO) as an... 

    The Biological Removal of Methane of Contaminated Air

    , M.Sc. Thesis Sharif University of Technology Forouzesh Pour, Ali (Author) ; Shaygan Salek, Jalaloddin (Supervisor) ; Rashtchian, Davood (Co-Advisor)
    Abstract
    Trash production in Iran is increasing. The majority of trash is being buried and that induces the emission of methane gas (CH4), which is a greenhouse gas. In this thesis, the aim was mostly to remove methane from greenhouse gases by applying several cheap and abundant substances. For this purpose, a biofilteration system was provided. It has been tested using two packings: straw and plastic. To provide the necessary materials for bacterium growth, a nutrient solution was used. The results of this work have revealed that plastic proved to be more effective than another substance and the removal percent obtained was about 61%. The result for straw was 42%. Furthermore, the experiments were... 

    MTBE Bioremediation Using Ps. Putida

    , M.Sc. Thesis Sharif University of Technology Rahbarsafa, Omid (Author) ; Yaghmaei, Soheila (Supervisor)

    Optimization of Lipase Immobilization

    , M.Sc. Thesis Sharif University of Technology Sayyar Kavardi, Sepideh (Author) ; Aalemzadeh, Iran (Supervisor) ; Kazemi, Akhtarolmolouk (Supervisor)
    Abstract
    In this study, Pseudomonas aeruginosa BBRC-10036 was used for lipase production. The organism secreted the enzyme extracellulary. First of all, effect of initial pH of the culture broth on lipase activity was studied in order to determine the optimum condition for lipase production. After production, this enzyme must be separated from culture and after that the enzyme must be purified for using in analysis and industry. Different methods are used for purification of the enzyme. In this research, first precipitation was used and then this lipase has been purified by Ion exchange Chromatography leading to 2.33- fold purification and 11.47% recovery. In precipitation by acetone, maximum... 

    Development of Microorganisms with Improved Biosurfactant Activity

    , Ph.D. Dissertation Sharif University of Technology Bagheri Lotfabad, Tayebe (Author) ; Roosta Azad, Reza (Supervisor) ; Rouholamini Najafabadi, Abdolhossein (Supervisor) ; Akbari Noghabi, Kambiz (Co-Advisor) ; Shahcheraghi, Fereshte (Co-Advisor)
    Abstract
    This thesis discusses the work on the production of a rhamnolipid-type biosurfactant by Pseudomonas aeruginosa MR01, its structural characterization and environmental applications. First, results from analytical approaches for screening of biosurfactant producers suggested the oil spreading method as the fastest, simplest and most consistent analytical method. The second part of the thesis describes the properties of the most efficient biosurfactant-producing bacteria isolated from oil fields in south of Iran and according to it’s biochemical characteristics and partial sequenced 16S rRNA gene affiliated with Pseudomonas aeruginosa. Time course study indicated that the maximum biosurfactant... 

    Investigation on the Ability of Pseudomonas Putida Bacterium for Biosorption of Se(IV) from the Aqueous Solutions

    , M.Sc. Thesis Sharif University of Technology Esmaeili Doabsari, Fatemeh (Author) ; Outokesh, Mohammad (Supervisor) ; Keshtkar, Alireza (Supervisor) ; Sohbatzadeh, Hozhabr (Co-Supervisor)
    Abstract
    In this study, biosorption of selenium by Pseudomonas putida bacteria was investigated in both single and binary uptake systems. Bacteria cells were immobilized in the chitosan beads, to study impact of microorganism entrapment on the sorption capacity of the fabricated adsorbent. Uptake capacity increased by the entrapped bacterial weight percent up to 20 wt. %; but thereafter, sorption capacity gradually leveled off with an increase in the loading percentage of the bacterial cells.The effects of the three process variables including pH (2-6), biomass dosage (0.5-2.5 g/L) and initial concentration of selenium (50-250 mg/L) on the uptake performance of adsorbent were investigated, and... 

    Processing Fermented Lipase

    , M.Sc. Thesis Sharif University of Technology Asadollahi Chaghoosh, Aida (Author) ; Roosta Azad, Reza (Supervisor) ; Yeganeh Sarkandi, Shahin (Supervisor)
    Abstract
    Lipases (triacylglycerol acylhydrolases) are industrial enzymes that have wide applications in the detergent, pharmaceutical and food industries. Pseudomonas aeruginosa strain is known to be suitable for lipase production due to its stability in organic solvents, resistance to temperature and pH. Lipases are usually secreted extracellularly, and its isolation from the culture medium is very important. The most cost-effective separation method is filtration which is more economical than centrifuge. Here, the use of filtration method is important from two aspects of creating clearance and maintaining enzyme activity. The equipment in this research is the filter press, whose initial tests are... 

    Fabrication localized surface plasmon resonance sensor chip of gold nanoparticles and detection lipase-osmolytes interaction

    , Article Applied Surface Science ; Vol. 314, issue , 2014 , Pages 138-144 ; ISSN: 01694332 Ghodselahi, T ; Hoornam, S ; Vesaghi, M. A ; Ranjbar, B ; Azizi, A ; Mobasheri, H ; Sharif University of Technology
    Abstract
    Co-deposition of RF-sputtering and RF-PECVD from acetylene gas and Au target were used to prepare sensor chip of gold nanoparticles (Au NPs). Deposition conditions were optimized to reach a Localized Surface Plasmon Resonance (LSPR) sensor chip of Au NPs with particle size less than 10 nm. The RF power was set at 180 W and the initial gas pressure was set at 0.035 mbar. Transmission Electron Microscopy (TEM) images and Atomic Force Microscopy (AFM) data were used to investigate particles size and surface morphology of LSPR sensor chip. The Au and C content of the LSPR sensor chip of Au NPs was obtained from X-ray photoelectron spectroscopy (XPS). The hydrogenated amorphous carbon (a-C:H)... 

    A technical feasibility analysis to apply Pseudomonas aeroginosa MR01 biosurfactant in microbial enhanced oil recovery of low-permeability carbonate reservoirs of Iran

    , Article Scientia Iranica ; Volume 17, Issue 1 C , JANUARY-JUNE , 2010 , Pages 46-54 ; 10263098 (ISSN) Adelzadeh, M. R ; Roostaazad, R ; Kamali, M. R ; Bagheri Lotfabad, T ; Sharif University of Technology
    2010
    Abstract
    The effect of an efficient biosurfactant produced from Pseudomonas aeroginosa MR01, a bacterial strain isolated from oil excavation areas in southern Iran, on the recovery of residual oil trapped within carbonate rocks, was investigated. In a core holder set-up, bearing a number of limestone-and dolomite-containing core samples, biosurfactant flooding resulted in oil recoveries as large as 20% to 28% Residual Oil (R.O). Biosurfactant injection in less permeable rocks in a range of 0.5 to 32 md was more successful, in terms of oil production. In the case of the least oil recovery via biosurfactant flooding, incubation of the core with a biosurfactant solution at reservoir conditions,... 

    Comparing the Performance of Centrifuge, Membrane Filter and Filter Press for Clarification of Lipase Enzyme

    , M.Sc. Thesis Sharif University of Technology Taher Aslani, Ahmad Reza (Author) ; Rousta Azad, Reza (Supervisor)
    Abstract
    Lipases (Triacyl Glycerol Acyl Hydrolase, EC.3.1.1.3) are multidimensional biocatalysts which have many applications in food industrials, dairy, fats and oils processing, detergents, synthesis of pure chemical and pharmaceutical materials, paper industrial and cosmetics. Generally, industrial enzymes are produced extracellularly, so their separation from a low-cost complex medium (usually used for production) is one of the cost stages in their production process. Filtration is the most economical method of separation in the production of enzymes, but due to the small size of colloidal particles and cell masses present in the fermentation environment, its use is subject to limitations. In... 

    Biodegradation of cyanide under alkaline conditions by a strain of pseudomonas putida isolated from gold mine soil and optimization of process variables through response surface methodology (RSM)

    , Article Periodica Polytechnica Chemical Engineering ; Volume 62, Issue 3 , May , 2018 , Pages 265-273 ; 03245853 (ISSN) Moradkhani, M ; Yaghmaei, S ; Ghobadi Nejad, Z ; Sharif University of Technology
    Budapest University of Technology and Economics  2018
    Abstract
    In regard to highly poisonous effects of cyanide ion, concerns have been focused recently on treatment of such compounds in different ways. Four bacterial strains (C1-C4) capable of using cyanide as nitrogen source were isolated from contaminated gold mine soil samples under alkaline conditions at 30 °C, pH 9.5-10.5, and agitation speed 150 rpm. The gram-negative bacterium C3 (identified as Pseudomonas parafulva NBRC 16636(T) by 16S rRNA gene sequencing) was able to tolerate cyanide up to 500 ppm besides removing 93.5% of 200 ppm cyanide in 13 days which was confirmed by microorganisms growth. The addition of basal salts enhanced the removal efficiency of C3 by 16%. Cyanide removal... 

    Zeolite-based catalytic micromotors for enhanced biological and chemical water remediation

    , Article New Journal of Chemistry ; Volume 44, Issue 44 , 2020 , Pages 19212-19219 Abedini, F ; Madaah Hosseini, H. R ; Sharif University of Technology
    Royal Society of Chemistry  2020
    Abstract
    Zeolite-based micromotors were developed to eliminate the biological and chemical contamination of water in a fast and efficient way. The motors consist of a silver-exchanged zeolite core and a partial catalytic coating. These porous engines showed rapid killing of Pseudomonas aeruginosa bacteria cells in a very short time, less than 7.5 minutes. The heavy metal uptake of the zeolitic motors during the first 20 minutes of contact was considerably higher than that of zeolite particles by 23% for Pb2+, 19% for Co2+, and 16% for Ni2+. Also, the maximum removal efficiency of the motors (at room temperature and for 6 hours) for Pb2+, Co2+, and Ni2+ was 93%, 87%, and 78%, respectively, higher than... 

    Molecular machinery responsible for graphene oxide's distinct inhibitory effects toward pseudomonas aeruginosa and staphylococcus aureus pathogens

    , Article ACS Applied Bio Materials ; Volume 4, Issue 1 , 2021 , Pages 660-668 ; 25766422 (ISSN) Ashari Astani, N ; Najafi, F ; Maghsoumi, A ; Huma, K ; Azimi, L ; Karimi, A ; Ejtehadi, M. R ; Gumbart, J. C ; Naseri, N ; Sharif University of Technology
    American Chemical Society  2021
    Abstract
    Graphene oxide flakes are considered as potential inhibitors for different pathogenic bacteria. However, the efficacy of inhibition changes for different types and strains of bacteria. In this work, we examine Pseudomonas aeruginosa and Staphylococcus aureus, two common hospital-acquired infections, which react quite differently to graphene oxide flakes. The minimum inhibitory tests yield two distinct outcomes: stopped proliferation for S. aureus versus almost no effect for P. aeruginosa. Integrating our experimental evidence with molecular dynamics simulations, we elucidate the molecular machinery involved, explaining the behavior we see in scanning electron microscopy images. According to... 

    MIL-125-based nanocarrier decorated with Palladium complex for targeted drug delivery

    , Article Scientific Reports ; Volume 12, Issue 1 , 2022 ; 20452322 (ISSN) Bagherzadeh, M ; Safarkhani, M ; Kiani, M ; Radmanesh, F ; Daneshgar, H ; Ghadiri, A. M ; Taghavimandi, F ; Fatahi, Y ; Safari-Alighiarloo, N ; Ahmadi, S ; Rabiee, N ; Sharif University of Technology
    Nature Research  2022
    Abstract
    The aim of this work was to provide a novel approach to designing and synthesizing a nanocomposite with significant biocompatibility, biodegradability, and stability in biological microenvironments. Hence, the porous ultra-low-density materials, metal–organic frameworks (MOFs), have been considered and the MIL-125(Ti) has been chosen due to its distinctive characteristics such as great biocompatibility and good biodegradability immobilized on the surface of the reduced graphene oxide (rGO). Based on the results, the presence of transition metal complexes next to the drug not only can reinforce the stability of the drug on the structure by preparing π–π interaction between ligands and the... 

    Niosome-encapsulated tobramycin reduced antibiotic resistance and enhanced antibacterial activity against multidrug-resistant clinical strains of Pseudomonas aeruginosa

    , Article Journal of Biomedical Materials Research - Part A ; Volume 109, Issue 6 , 2021 , Pages 966-980 ; 15493296 (ISSN) Hedayati Ch, M ; Abolhassani Targhi, A ; Shamsi, F ; Heidari, F ; Salehi Moghadam, Z ; Mirzaie, A ; Behdad, R ; Moghtaderi, M ; Akbarzadeh, I ; Sharif University of Technology
    John Wiley and Sons Inc  2021
    Abstract
    In the current study, niosome-encapsulated tobramycin based on Span 60 and Tween 60 was synthesized and its biological efficacies including anti-bacterial, anti-efflux, and anti-biofilm activities were investigated against multidrug resistant (MDR) clinical strains of Pseudomonas aeruginosa. The niosomal formulations were characterized using scanning electron microscopy, transmission electron microscopy, and dynamic light scattering measurement. The encapsulation efficiency was found to be 69.54% ±; 0.67. The prepared niosomal formulations had a high storage stability to 60 days with small changes in size and drug entrapment, which indicates that it is a suitable candidate for pharmaceutical... 

    Simulation of Phenol Biodegradation by Pseudomonas Putida in a Continuous Stirred Biofilm Reactor

    , M.Sc. Thesis Sharif University of Technology Alinejad, Mahsa (Author) ; Yaghmaei, Soheila (Supervisor) ; Askaripour, Hossein (Supervisor)
    Abstract
    The use of microorganisms to remove or produce a substace is a fundamental part of biotechnology. An example is the bioreactors for phenol removal in wastewater. Biological processes are commonly done in batch reactors in which suspended cells grow in the liquid phase. The batch process needs alternate reactor washes and alternate cell cultivation, which leades to a longer time constant for for each batch. If these reactors operate in continuous conditions, the cells will leave the reactor in liquid flow, and high cell concentrations will be impossible. The biofilm layer makes a batch phase, so the liquid phase flows in and out continuously, but the cells in the biofilm layer stay in the...