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    Image Registration Using a Total Variation Based Similarity Metric

    , Ph.D. Dissertation Sharif University of Technology Aghajani, Khadijeh (Author) ; Manzouri Shelmani, Mohammad Taghi (Supervisor)
    Abstract
    Image registration is one of the fundamental and essential tasks for medical imaging and remote sensing applications. One of the most common challenges in this area is the presence of complex spatially varying intensity distortion in the images. The widely used similarity metrics, such as MI (Mutual Information), CC (Correlation Coefficient), SSD (Sum of Square Difference), SAD (Sum of Absolute Difference) and CR (Correlation Ratio), are not robust against this kind of distortion; because stationarity assumption and the pixel-wise independence cannot be obeyed and captured by these metrics. In this research, we proposed a new intensity-based method for simultaneous image registration and... 

    A new similarity measure for intensity-based image registration

    , Article Proceedings of the 4th International Conference on Computer and Knowledge Engineering, ICCKE 2014 ; 18 December , 2014 , Pages 227-232 ; ISBN: 9781479954865 Shirpour, M ; Aghajani, K ; Manzuri Shalmani, M. T ; Sharif University of Technology
    Abstract
    Defining a suitable similarity measure is a crucial step in (medical) image registration tasks. A common problem with frequently used intensity-based image registration algorithms is that they assume intensities of different pixels are independent of each other that could lead to low registration performance especially in the presence of spatially-varying intensity distortions, because they ignore the complex interactions between the pixel intensities. Motivated by this problem, in this paper we present a novel similarity measure which takes into account nonstationarity of the pixels intensity and complex spatially varying intensity distortions in mono-modal settings. Experimental results on... 

    Effect of landmark configuration on target registration error for vertebra: A phantom study

    , Article Proceedings of SPIE - The International Society for Optical Engineering ; Volume 8671 , 2013 ; 0277786X (ISSN) ; 9780819494450 (ISBN) Ershad, M ; Ahmadian, A ; Seraj, N. D ; Saberi, H ; Khoiy, K. A ; Sharif University of Technology
    2013
    Abstract
    The configuration of landmarks is an important issue in minimizing the target registration error (TRE). In this paper the effect of different landmark configurations on the accuracy of pedicle screw placement during image guided spine surgery (IGSS) is investigated. Since the spine is deformed in intra-operative conditions compared to the preoperative situation, an accurate alignment of each vertebra is crucial to compensate for the deformation. CT compatible markers are placed over anatomical landmarks which are feasible and routinely used in surgical procedures. The TRE is obtained directly for the markers which are placed on the right and left pedicle of the vertebra. The estimated TRE... 

    Landmark and intensity based image registration using free form deformation

    , Article 2012 IEEE-EMBS Conference on Biomedical Engineering and Sciences, IECBES 2012 ; 2012 , Pages 768-771 ; 9781467316668 (ISBN) Ghaffari, A ; Khorsandi, R ; Fatemizadeh, E ; University Malaya; CBMTI University Malaya; Tourism Malaysia; Kumpulan ABEX Sdn Bhd; AMAN kampus ; Sharif University of Technology
    2012
    Abstract
    The registration of images is a fundamental task in numerous applications in medical image processing. In this paper, a novel registration technique is proposed which combines landmark and intensity based approaches. In this framework, the free form deformation (FFD) is used as transformation which is the key point of our algorithm. Landmarks with FFD transformation define the guidance surface which increases robustness of intensity based registration to bias field (bias noise). In fact, the performance of registration is improved by matching both landmark and intensity information. The experimental results show that the proposed method is more accurate than only intensity based method... 

    Robust registration of medical images in the presence of spatially-varying noise

    , Article Algorithms ; Volume 15, Issue 2 , 2022 ; 19994893 (ISSN) Abbasi Asl, R ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    MDPI  2022
    Abstract
    Spatially-varying intensity noise is a common source of distortion in medical images and is often associated with reduced accuracy in medical image registration. In this paper, we propose two multi-resolution image registration algorithms based on Empirical Mode Decomposition (EMD) that are robust against additive spatially-varying noise. EMD is a multi-resolution tool that decomposes a signal into several principle patterns and residual components. Our first proposed algorithm (LR-EMD) is based on the registration of EMD feature maps from both floating and reference images in various resolutions. In the second algorithm (AFR-EMD), we first extract a single average feature map based on EMD... 

    Registration of MRI-CT Images of the Human Brain using Deep Learning

    , M.Sc. Thesis Sharif University of Technology Ansarino, Keyvan (Author) ; Fatemizadeh, Emadeddin (Supervisor)
    Abstract
    Image registration is the process of matching the coordinate systems of two or more images. Medical image registration has been used in a variety of applications such as segmentation, motion tracking and etc. Recently, the use of deep neural networks has been demonstrated as a useful approach to registration problems. In this work, we propose two separate novel Convolutional Neural Network (CNN) architectures for multi-modal rigid and affine registration of the CT-MRI images of the brain. A dataset consisting of CT-MRI images of 37 subjects was used for training and evaluation of the networks. For both networks, the proposed models achieved high mutual information value between predicted CT... 

    Sub-pixel image registration based on physical forces

    , Article 2010 International Conference on Wireless Communications and Signal Processing, WCSP 2010, 21 October 2010 through 23 October 2010, Suzhou ; 2010 ; 9781424475551 (ISBN) Ghayoor, A ; Ghorbani, S ; Beheshti Shirazi, A. A ; Sharif University of Technology
    2010
    Abstract
    A new method for image registration has been previously proposed by the authors, which the registration is based on physical forces. The registration parameters are translation and rotation. This method assumes images like charged materials that attract each other. In this case, one of the images moves in the same direction as the applied force while the other one is still. The movement of the image continues until the resultant force becomes zero. This approach estimates the registration parameters simultaneously and leading to a better optimized set of registration parameters. The registration error for this method is 1 to 3 pixels. In this paper we aim to develop this method for the... 

    A survey of medical image registration on multicore and the GPU

    , Article IEEE Signal Processing Magazine ; Volume 27, Issue 2 , 2010 , Pages 50-60 ; 10535888 (ISSN) Shams, R ; Sadeghi, P ; Kennedy, R ; Hartley, R ; Sharif University of Technology
    2010
    Abstract
    In this article, we look at early, recent, and state-of-the-art methods for registration of medical images using a range of high-performance computing (HPC) architectures including symmetric multiprocessing (SMP), massively multiprocessing (MMP), and architectures with distributed memory (DM), and nonuniform memory access (NUMA). The article is designed to be self-sufficient. We will take the time to define and describe concepts of interest, albeit briefly, in the context of image registration and HPC. We provide an overview of the registration problem and its main components in the section "Registration." Our main focus will be HPC-related aspects, and we will highlight relevant issues as... 

    Zygomatic bone registration based on a modified student's mixture model method

    , Article 26th National and 4th International Iranian Conference on Biomedical Engineering, ICBME 2019, 27 November 2019 through 28 November 2019 ; 2019 , Pages 88-92 ; 9781728156637 (ISBN) Noori, S. M. R ; Mobaraki, M ; Ahmadian, A ; Bayat, M ; Bahrami, N ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2019
    Abstract
    Point Set Registration (PSR) of anatomic parts is used in different fields such as Patient Specific Implant (PSI) design in Computer Assisted Surgery (CAS) procedure. We designed a modified rigid PSR method based on student's-t mixture model. The proposed method is compared with Coherent Point Drift (CPD) registration method. Higher convergence speed and the lower error value are the advantages of the suggested algorithm in compare with CPD. In our method, the number of iterations decreases by about 69%, and the final error improvement was about 7% in comparison with CPD. The robustness of the proposed algorithm makes it beneficial to be used in the procedure of designing PSI in both... 

    Tracking the 3D configuration of human joint using an MR image registration technique

    , Article ASME 2010 5th Frontiers in Biomedical Devices Conference and Exhibition, BIOMED 2010, 20 September 2010 through 21 September 2010 ; 2010 , Pages 93-94 ; 9780791849453 (ISBN) Mostafavi Yazdi, S. K ; Farahmand, F ; Jafari, A ; Sharif University of Technology
    Abstract
    Surface registration is a necessary step and widely used in medical image-aided surgery. It's relevance to medical imaging is that there is much useful anatomical information in the form of collected surface points which originate from complimentary modalities. In this study, the kinematic relations between two point clouds with different coordinate definitions have been generated. Using Influence Method of surface modeling for extracting point clouds functions, the transformation matrix would be resulted. The proposed method was applied for an experimental femur data points(651 points) using the MRI images. These data points were transformed in a 30 degrees flexion of knee. This... 

    RISM: Single-Modal Image Registration via Rank-Induced Similarity Measure

    , Article IEEE Transactions on Image Processing ; Volume 24, Issue 12 , 2015 , Pages 5567-5580 ; 10577149 (ISSN) Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    Abstract
    Similarity measure is an important block in image registration. Most traditional intensity-based similarity measures (e.g., sum-of-squared-difference, correlation coefficient, and mutual information) assume a stationary image and pixel-by-pixel independence. These similarity measures ignore the correlation between pixel intensities; hence, perfect image registration cannot be achieved, especially in the presence of spatially varying intensity distortions. Here, we assume that spatially varying intensity distortion (such as bias field) is a low-rank matrix. Based on this assumption, we formulate the image registration problem as a nonlinear and low-rank matrix decomposition (NLLRMD).... 

    Rotated general regression neural network

    , Article 2007 International Joint Conference on Neural Networks, IJCNN 2007, Orlando, FL, 12 August 2007 through 17 August 2007 ; 2007 , Pages 1959-1964 ; 10987576 (ISSN) ; 142441380X (ISBN); 9781424413805 (ISBN) Gholamrezaei, M ; Ghorbanian, K ; Sharif University of Technology
    2007
    Abstract
    A rotated general regression neural network is presented as an enhancement to the general regression neural network. A variable kernel estimate for multivariate densities is considered. A coordinate transformation is adopted which circumvent the difficulty of predicting multimodal distribution with large variance differences between modes which is associated with the general regression neural network. The proposed technique trains the network in a way that the variance differences between modes is kept small and in the same order. Further, the technique reduces the number of indispensable training parameters to two parameters and lowers the load of the computation as well as the time for... 

    Remotely sensed change detection using multiresolution analysis and motion estimation

    , Article Remote Sensing for Environmental Monitoring, GIS Applications, and Geology IV, Maspalomas, 14 September 2004 through 16 September 2004 ; Volume 5574 , 2004 , Pages 194-204 ; 0277786X (ISSN) Lakdashti, A ; Kasaei, S ; SPIE ; Sharif University of Technology
    2004
    Abstract
    Detection of changes in remotely sensed geographic images is required for a variety of applications including natural disasters. Change detection is an important process utilized for updating the geographic information system (GIS) data, monitoring natural resources and urban developments. It provides quantitative analysis of the spatial distribution of the area of interest. Different types of change detection techniques include: Multi-date visual composite (multitemporal composite), image differencing, post-classification, etc. In this work, we propose a change detection algorithm based on multiresolution analysis and motion estimation. We use multispectral satellite imagery and apply the... 

    Developing Robust Image Similarity Measure in Feature Based Image Registration

    , M.Sc. Thesis Sharif University of Technology Majdi, Mohammad Sadegh (Author) ; Fatemizadeh, Emad (Supervisor)
    Abstract
    Image registration is an important preprocessing step in analysis of medical images. Detection, Treatment plan, disease grows process analysis and assistance in surgical applications are some of medical images applications. We need to be able to compare different modalities in medical images such as X-ray, PET, MRI, and CT... , or sometimes doctors need to take images of a patient in a same modality but in different times and directions. In which in order to be able to do theses comparisons we need to first align these images by using image registration methods. Image registration is an image processing method in which tries to find a geometrical transformation that would map different... 

    Sparse-induced similarity measure: Mono-modal image registration via sparse-induced similarity measure

    , Article IET Image Processing ; Volume 8, Issue 12 , 1 December , 2014 , Pages 728-741 ; ISSN: 17519659 Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    Abstract
    Similarity measure is an important key in image registration. Most traditional intensity-based similarity measures (e.g. sum-of-squared-differences, correlation coefficient, mutual information and correlation ratio) assume a stationary image and pixel-by-pixel independence. These similarity measures ignore the correlation among pixel intensities; hence, a perfect image registration cannot be achieved especially in the presence of spatially varying intensity distortions and outlier objects that appear in one image but not in the other. It is supposed here that non-stationary intensity distortion (such as bias field) has a sparse representation in the transformation domain. Based on this... 

    Minimization of target registration error for vertebra in image-guided spine surgery

    , Article International Journal of Computer Assisted Radiology and Surgery ; Vol. 9, issue. 1 , January , 2014 , p. 29-38 Ershad, M ; Ahmadian, A ; Dadashi Serej, N ; Saberi, H ; Amini Khoiy, K ; Sharif University of Technology
    Abstract
    Purpose: The accuracy of pedicle screw placement during image-guided spine surgery (IGSS) can be characterized by estimating the target registration error (TRE). The major factors that influence TRE were identified, minimized, and verified with in vitro experiments. Materials and methods: Computed-tomography- compatible markers are placed over anatomical landmarks of lumbar vertebral segments in locations that are feasible and routinely used in surgical procedures. TRE was determined directly for markers placed on the pedicles of vertebra segments. First, optimum selections of landmarks are proposed for different landmarks according to the minimum achievable TRE values in different... 

    An efficient approach for robust multimodal retinal image registration based on UR-SIFT features and PIIFD descriptors

    , Article Eurasip Journal on Image and Video Processing ; Volume 2013 , 2013 ; 16875176 (ISSN) Ghassabi, Z ; Shanbehzadeh, J ; Sedaghat, A ; Fatemizadeh, E ; Sharif University of Technology
    2013
    Abstract
    Existing algorithms based on scale invariant feature transform (SIFT) and Harris corners such as edge-driven dual-bootstrap iterative closest point and Harris-partial intensity invariant feature descriptor (PIIFD) respectivley have been shown to be robust in registering multimodal retinal images. However, they fail to register color retinal images with other modalities in the presence of large content or scale changes. Moreover, the approaches need preprocessing operations such as image resizing to do well. This restricts the application of image registration for further analysis such as change detection and image fusion. Motivated by the need for efficient registration of multimodal retinal... 

    Nonrigid registration of breast MR images using residual complexity similarity measure

    , Article Iranian Conference on Machine Vision and Image Processing, MVIP, Zanjan ; Sept , 2013 , Pages 241-244 ; 21666776 (ISSN); 9781467361842 (ISBN) Nekoo, A. H ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    IEEE Computer Society  2013
    Abstract
    Elimination of motion artifact in breast MR images is a significant issue in pre-processing step before utilizing images for diagnostic applications. Breast MR Images are affected by slow varying intensity distortions as a result of contrast agent enhancement. Thus a nonrigid registration algorithm considering this effect is needed. Traditional similarity measures such as sum of squared differences and cross correlation, ignore the mentioned distortion. Therefore, efficient registration is not obtained. Residual complexity is a similarity measure that considers spatially varying intensity distortions by maximizing sparseness of the residual image. In this research, the results obtained by... 

    Automatic B-spline image registration using histogram-based landmark extraction

    , Article 2012 IEEE-EMBS Conference on Biomedical Engineering and Sciences, IECBES 2012 ; 2012 , Pages 1004-1008 ; 9781467316668 (ISBN) Ghanbari, A ; Abbasi Asl, R ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    2012
    Abstract
    Recognition and correction of inhomogeneous displacement caused by patient's movement has been recently discussed as an interesting topic in medical image processing. Considering consistency in general structure of the image during distortion, histogram could be employed as a fast implementation method in feature domain. Accordingly, attribute vectors could be defined for each pixel based on spatial features to find corresponding points in two images. Consequently a point-based and non-rigid transformation approach will be designed. A B-spline image registration has been applied to match those pairs with a defined smoothness factor. This algorithm is a step-by-step registration process... 

    MMRO: A feature selection criterion for MR images based on alpha stable filter responses

    , Article 2011 7th Iranian Conference on Machine Vision and Image Processing, MVIP 2011 - Proceedings ; 2011 ; 9781457715358 (ISBN) Abbasi Asl, R ; Fatemizadeh, E ; Sharif University of Technology
    Abstract
    In feature-based image registration, feature selection and reduction methods play an important role in decreasing computational burden of these operations. In this paper, a new approach is introduced to reduce the dimension of extracted feature vectors of MR images. This approach is based on the selection of the maximum and minimum responses of the alpha stable filter for the MR images over the extracted features with different orientation in frequency domain. This algorithm selects the rotation invariant features which are suitable for image registration purposes. It has been shown that these features could efficiently describe the image elements. The discriminating ability of the features...