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    TripletProt: Deep Representation Learning of Proteins Based On Siamese Networks

    , Article IEEE/ACM Transactions on Computational Biology and Bioinformatics ; Volume 19, Issue 6 , 2022 , Pages 3744-3753 ; 15455963 (ISSN) Nourani, E ; Asgari, E ; McHardy, A. C ; Mofrad, M. R. K ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2022
    Abstract
    Pretrained representations have recently gained attention in various machine learning applications. Nonetheless, the high computational costs associated with training these models have motivated alternative approaches for representation learning. Herein we introduce TripletProt, a new approach for protein representation learning based on the Siamese neural networks. Representation learning of biological entities which capture essential features can alleviate many of the challenges associated with supervised learning in bioinformatics. The most important distinction of our proposed method is relying on the protein-protein interaction (PPI) network. The computational cost of the generated... 

    Replay spoofing countermeasure using autoencoder and siamese networks on ASVspoof 2019 challenge

    , Article Computer Speech and Language ; Volume 64 , 2020 Adiban, M ; Sameti, H ; Shehnepoor, S ; Sharif University of Technology
    Academic Press  2020
    Abstract
    Automatic Speaker Verification (ASV) is authentication of individuals by analyzing their speech signals. Different synthetic approaches allow spoofing to deceive ASV systems (ASVs), whether using techniques to imitate a voice or reconstruct the features. Attackers beat up the ASVs using four general techniques; impersonation, speech synthesis, voice conversion, and replay. The last technique is considered as a common and high potential tool for spoofing purposes since replay attacks are more accessible and require no technical knowledge of adversaries. In this study, we introduce a novel replay spoofing countermeasure for ASVs. Accordingly, we use the Constant Q Cepstral Coefficient (CQCC)...