Sharif Digital Repository

Macro-operators are sequences of actions that can guide a planner to achieve its goals faster by avoiding search for those sequences. However, using macro-operators will also increase the branching factor of choosing operators, and as a result making planning more complex and less efficient. On the other hand, the detection and exploitation of symmetric structures in planning problems can reduce the search space by directing the search process. In this paper, we present a new method for detecting symmetric objects through subgraph-isomorphism, and exploiting the extracted information in macrooperator selection. The method has been incorporated into HSP2, and tested on a collection of... 

We carry out a coarse-grained molecular dynamics simulation of phospholipid vesicles with transmembrane proteins. We measure the mean and Gaussian curvatures of our protein-embedded vesicles and quantitatively show how protein clusters change the shapes of their host vesicles. The effects of depletion force and vesiculation on protein clustering are also investigated. By increasing the protein concentration, clusters are fragmented to smaller bundles, which are then redistributed to form more symmetric structures corresponding to lower bending energies. Big clusters and highly aspherical vesicles cannot be formed when the fraction of protein to lipid molecules is large  

The electric field of the modes of semiconductor microring lasers (SMRLs) in the presence of bus waveguide reflections are linear combinations of the clock wise (CW) and the counter clock wise (CCW) electric fields. The mode structures can be controlled by the waveguide reflection coefficients. The power ratio and phase difference of the CW and CCW fields of one mode is proportional to the ratio of the reflection coefficients of the left and right waveguides. It is shown that the degenerate CW and CCW modes in the presence of bus waveguide reflections are split into two modes with different frequencies. Employing these new modes, SMRL can be used as an element to design flip-flops used in... 

Background: It has been previously shown that palindromic sequences are frequently observed in proteins. However, our knowledge about their evolutionary origin and their possible importance is incomplete. Results: In this work, we tried to revisit this relatively neglected phenomenon. Several questions are addressed in this work. (1) It is known that there is a large chance of finding a palindrome in low complexity sequences (i.e. sequences with extreme amino acid usage bias). What is the role of sequence complexity in the evolution of palindromic sequences in proteins? (2) Do palindromes coincide with conserved protein sequences? If yes, what are the functions of these conserved segments?...