Sharif Digital Repository

Based on our present knowledge on SARS-CoV-2 virus, which is collectively summarized in this work, it is shown that water plays a crucial role in stabilizing the virus, in such a way that its viability may reduce from a few days to a few seconds in the absence of water layer. Water not only provides a protective shell for the virus in which it is enveloped, but enhances its binding with the human cell. Therefore, one may conclude that the dehydration of the hydrated virus makes it much more vulnerable, due to the fact that if it is exposed to many chemicals it will be deactivated; even by particles in air, such as ozone, singlet oxygen and pollutants. Thermodynamically, the dehydration may... 

Based on our present knowledge on SARS-CoV-2 virus, which is collectively summarized in this work, it is shown that water plays a crucial role in stabilizing the virus, in such a way that its viability may reduce from a few days to a few seconds in the absence of water layer. Water not only provides a protective shell for the virus in which it is enveloped, but enhances its binding with the human cell. Therefore, one may conclude that the dehydration of the hydrated virus makes it much more vulnerable, due to the fact that if it is exposed to many chemicals it will be deactivated; even by particles in air, such as ozone, singlet oxygen and pollutants. Thermodynamically, the dehydration may... 

A deterministic model for human immunodeficiency virus (denoted HIV) infection in the presence of combination therapy is considered. Global asymptotic stability of the disease-free equilibrium is discussed and the endemic equilibrium is also investigated. © 2006 Elsevier Ltd. All rights reserved  

Dengue is among the most important infectious diseases in the world. The main contribution of our paper is to present a mixed system of partial and ordinary differential equations. This combined model is a generalization of the two presented mathematical models (A. L. de Araujo, J. L. Boldrini and B. M. Calsavara, An analysis of a mathematical model describing the geographic spread of dengue disease, J. Math. Anal. Appl. 444 (2016) 298-325) and (L. Cai, X. Li, N. Tuncer, M. Martcheva and A. A. Lashari, Optimal control of a malaria model with asymptomatic class and superinfection, Math. Biosci. 288 (2017) 94-108), describing the geographic spread of dengue disease. Our model has the ability... 

Objective: This systematic review and meta-analysis was performed to determine the prevalence rate of influenza virus from different parts of Middle East region, and present an overall relative frequency (RF) for this region. Methods: The authors performed a systematic literature review from several reliable databases such as PubMed, ISI Web of Science and Scopus during 2000–2016. Furthermore, the keywords of this research were ‘Influenza’, ‘Subtype’, ‘Seroprevalence’, ‘Incidence’, ‘Seroepidemiology’, ‘H1N1’, ‘H3N2’, ‘H5N1’, ‘H9N2’, ‘Middle-East’ and ‘Meta-analysis’. The reported data were selected according to inclusion and exclusion criteria. Results: The authors selected 71 studies out of... 

The COVID-19 outbreak has triggered a massive research, but still urgent detection and treatment of this virus seems a public concern. The spread of viruses in aqueous environments underlined efficient virus treatment processes as a hot challenge. This review critically and comprehensively enables identifying and classifying advanced biochemical, membrane-based and disinfection processes for effective treatment of virus-contaminated water and wastewater. Understanding the functions of individual and combined/multi-stage processes in terms of manufacturing and economical parameters makes this contribution a different story from available review papers. Moreover, this review discusses... 

Nanocages (NCs) have emerged as a new class of drug-carriers, with a wide range of possibilities in multi-modality medical treatments and theranostics. Nanocages can overcome such limitations as high toxicity caused by anti-cancer chemotherapy or by the nanocarrier itself, due to their unique characteristics. These properties consist of: (1) a high loading-capacity (spacious interior); (2) a porous structure (analogous to openings between the bars of the cage); (3) enabling smart release (a key to unlock the cage); and (4) a low likelihood of unfavorable immune responses (the outside of the cage is safe). In this review, we cover different classes of NC structures such as virus-like... 

A new robust adaptive controller is developed for the control of the hepatitis B virus (HBV) infection inside the body. The non-linear HBV model has three state variables: uninfected cells, infected cells and free viruses. A control law is designed for the antiviral therapy such that the volume of infected cells and the volume of free viruses are decreased to their desired values which are zero. One control input represents the efficiency of drug therapy in inhibiting viral production and the other control input represents the efficiency of drug therapy in blocking new infection. The proposed controller ensures the stability and robust performance in the presence of parametric and... 

In this paper, a nonlinear adaptive control method is presented for the treatment of the Hepatitis B Virus (HBV) infection. Nonlinear dynamics of the HBV, modeling uncertainties and three state variables (the numbers of uninfected and infected cells and free viruses) are taken into account. The proposed control law is designed for the antiviral drug input such that the number of free viruses and consequently the number of infected cells decrease to the desired values. An adaptation law is also presented to overcome modeling uncertainties by updating estimations of the system parameters during the treatment period. The stability of the process and convergence to desired state values are... 

Compared with conventional cancer treatments, the main advantage of oncolytic virotherapy is its tumor-selective replication followed by the destruction of malignant cells without damaging healthy cells. Accordingly, this kind of biological therapy can potentially be used as a promising approach in the field of cancer management. Given the failure of traditional monitoring strategies (such as immunohistochemical analysis (in providing sufficient safety and efficacy necessary for virotherapy and continual pharmacologic monitoring to track pharmacokinetics in real-time, the development of alternative strategies for ongoing monitoring of oncolytic treatment in a live animal model seems... 

The optical polarization properties of virus-infected cells have been measured, analyzed, and compared with the uninfected cells. In this regard, Vero and HeLa cells have been used as the host for Herpes simplex viruses (HSV). By using polarization microscopy imaging technique, the Mueller matrix images of infected and uninfected cells have been recorded. Through image processing and further analysis, the polarization properties of host cells are compared with their infected ones. For quantitative analysis, the multispectral Mueller matrix transformation (MMT) parameters (A and b) are calculated to identify the microstructural differentiations between uninfected and infected cells by HSV.... 

Acute respiratory syndrome coronavirus 2 (SARS-CoV-2), also called COVID-19, is one of the most contagious viruses resulting in a progressive pandemic. Since specific antiviral treatments have not been developed yet and its fatal rate is almost high, early and fast detection is critical for controlling the outbreak. In this study, a piezoelectric microcantilever biosensor has been designed for detecting COVID-19 samples directly without requiring preparation steps. The biosensor acts as a transducer and is coated with the related antibody. When the SARS-CoV-2 antigens adsorbed on the microcantilever top surface through their spike proteins, a surface stress due to the mass change would be... 

Since the injection of the oncolytic viruses in the virotherapy process reduces the toxicity and drug resistance inherent in the chemotherapy; chemovirotherapy as a novel combination therapy has become an efficient cancer treatment. The primary purpose of this paper is to design a robust optimal control strategy for the chemovirotherapy through which the tumor density decreases to its stable condition with limited drug and virus delivery. This desired treatment should be responsive in the presence of input disturbances and parametric uncertainties. In this regard, an ODE (Ordinary Differential Equation) mathematical model of the chemovirotherapy process presenting the connection between the... 

The growing number of Internet users and the prevalence of web applications make it necessary to deal with very complex software and applications in the network. This results in an increasing number of new vulnerabilities in the systems, and leading to an increase in cyber threats and, in particular, zero-day attacks. The cost of generating appropriate signatures for these attacks is a potential motive for using machine learning-based methodologies. Although there are many studies on using learning-based methods for attack detection, they generally use extracted features and overlook raw contents. This approach can lessen the performance of detection systems against content-based attacks... 

Purpose Whole genome sequencing of SARS-CoV2 is important to find useful information about the viral lineages, variants of interests and variants of concern. As there are not enough data about the circulating SARS-CoV2 variants in Iran, we sequenced 54 SARS-CoV2 genomes during the 5 waves of pandemic in Iran. Methods After viral RNA extraction from clinical samples collected during the COVID-19 pandemic, next generation sequencing was performed using the Nextseq platform. The sequencing data were analyzed and compared with reference sequences. Results During the 1st wave, V and L clades were detected. The second wave was recognized by G, GH and GR clades. Circulating clades during the 3rd... 

The main aim of the present work was to collect and categorize anti-HIV molecules in order to identify general structure-activity relationships. In this respect, a total of 5580 drugs and drug-like molecules was collected from 256 different articles published between 1992 and 2010. An algorithm called genetic algorithm-pattern search counterpropagation artificial neural networks (GPS-CPANN) was proposed for the classification of compounds. In addition, the CART (classification and regression trees) method was used for construction of decision trees and finding the best molecular descriptors. The results revealed that the developed CPANN models and decision tree can correctly classify the... 

An impedimetric human papilloma virus (HPV) DNA biosensor based on gold nanotubes (AuNTs) in label free detection was materialized. The AuNTs decorated nanoporous polycarbonate (AuNTs-PC) template as biosensor electrode was fabricated by electrodeposition method. The single strand DNA (ss-DNA) probe was covalently immobilized onto the AuNTs-PC electrode. The hybridization of target sequences with the ss-DNA probe was observed by the electrochemical impedance spectroscopy (EIS). The biosensor showed high selectivity and could differentiate between the complementary, mismatch and non-complementary DNA sequences. The EIS measurements were matched to Randle's equivalent circuit. The... 

Aim: The aim of this study was to assess the relationship between microRNAs and viral and immunological markers in HIV-1 infection. Materials & methods: The expression level of miRNAs was evaluated in 60 HIV-1 patients and 20 healthy controls using real-time PCR assays. Results: The results showed that among all miRNAs, miR-29 and miR-150 were significantly downregulated in HIV-1 patients compared with healthy controls, while miR-155 and miR-223 were significantly upregulated compared with healthy controls (p < 0.001 for all comparisons). Conclusion: The mentioned miRNAs seem to influence the clinical progression of HIV-1 infection in naive patients. Moreover, determining the profiles of...