Performance Improvement of Compression Algorithms for Gene Sequencing Reads by Cache Miss Improvement, M.Sc. Thesis Sharif University of Technology ; Goudarzi, Maziar (Supervisor)
Abstract
Nowadays, one of the challenges in the field of bioinformatics is the excess processed data volume such that this data volume resulted from a complete genome sequence of a species can be up to hundreds gigabytes. Every time that we talk about increasing data volume, data storage, transforming, and the process will become of interest. Moreover, considering the presence of portable sequencer devices in the market and the limitations of process outside of the lab environments, this problem becomes of more critical importance. Fortunately, due to the nature of the genome data and their redundancy, specific algorithms to compress them have been introduced to the market. In this thesis, we chose...
Cataloging briefPerformance Improvement of Compression Algorithms for Gene Sequencing Reads by Cache Miss Improvement, M.Sc. Thesis Sharif University of Technology ; Goudarzi, Maziar (Supervisor)
Abstract
Nowadays, one of the challenges in the field of bioinformatics is the excess processed data volume such that this data volume resulted from a complete genome sequence of a species can be up to hundreds gigabytes. Every time that we talk about increasing data volume, data storage, transforming, and the process will become of interest. Moreover, considering the presence of portable sequencer devices in the market and the limitations of process outside of the lab environments, this problem becomes of more critical importance. Fortunately, due to the nature of the genome data and their redundancy, specific algorithms to compress them have been introduced to the market. In this thesis, we chose...
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