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Designing a polymerase chain reaction device working with radiation and convection heat transfer

Madadelahi, M ; Sharif University of Technology | 2018

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  1. Type of Document: Article
  2. DOI: 10.1088/1757-899X/350/1/012010
  3. Publisher: Institute of Physics Publishing , 2018
  4. Abstract:
  5. Gene proliferation is vital for infectious and genetic diseases diagnosis from a blood sample, even before birth. In addition, DNA sequencing, genetic finger-print analyzing, and genetic mutation detecting can be mentioned as other procedures requiring gene reproduction. Polymerase chain reaction, briefly known as PCR, is a convenient and effective way to accomplish this task; where the DNA containing sample faces three temperature phases alternatively. These phases are known as denaturation, annealing, and elongation/extension which in this study -regarding the type of the primers and the target DNA sequence- are set to occur at 95, 58, and 72 degrees of Celsius. In this study, a PCR device has been designed and fabricated which uses radiation and convection heat transfer at the same time to set and control the mentioned thermal sections. A 300W incandescent light bulb able to immediately turn off and on along with two 8×8 cm DC fans, controlled by a microcontroller as well as PID and PD controller codes are used to monitor the applied thermal cycles. In designing the controller codes it has been concerned that they not only control the temperature over the set-points as well as possible, but also increase the temperature variation rate between each two phases. The temperature data were plotted and DNA samples were used to assess the device function. © Published under licence by IOP Publishing Ltd
  6. Keywords:
  7. Chains ; Controllers ; Diagnosis ; DNA ; DNA sequences ; Gene encoding ; Heat convection ; Heat radiation ; Incandescent lamps ; Nanostructured materials ; DNA Sequencing ; Genetic disease ; Genetic mutations ; Incandescent light bulbs ; Radiation and convection ; Temperature data ; Temperature variation rate ; Three temperature ; Polymerase chain reaction
  8. Source: 2017 International Conference on Nanomaterials and Biomaterials, ICNB 2017, 11 December 2017 through 13 December 2017 ; Volume 350, Issue 1 , 2018 ; 17578981 (ISSN)
  9. URL: https://iopscience.iop.org/article/10.1088/1757-899X/350/1/012010