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    Classifying Brain Activities by Deep Methods Over Graphs

    , M.Sc. Thesis Sharif University of Technology Sarafraz, Gita (Author) ; Rabiee, Hamid Reza (Supervisor) ; Manzuri, Mohammad Taghi (Supervisor)
    Abstract
    In recent years, the spread of neurological disorders worldwide has been increasing, especially in developing countries. Due to the unknown function, complexity, and high importance of the brain, such disorders have been pervasive, severe, prolonged, and impose enormous costs on the individual, the family, and the community. Thus, increasing the knowledge about the brain and its areas in various activities is too vital and can facilitate the diagnosis and treatment of many different and unknown neuro- logical disorders. Different kinds of research have been done to automatically process and find the active and vital areas in various states and brain activities. The problem with most of these... 

    Classification of EEG Signals to Detect Predefined Words in Imagined Speech

    , M.Sc. Thesis Sharif University of Technology Rajabli, Reza (Author) ; Beigy, Hamid (Supervisor)
    Abstract
    Attention to the Brain Computer interfaces (BCI) because of their potentials in improving, enhancing and substituting daily task, especially in people who suffer from diseases, has been increasing in the recent years. Such systems, receive brain activities and by extracting suitable features, try to interpret the brain commands. The aim of this project is to explore the ability of electroencephalogram (EEG) signal for silent communication by means of decoding imagined speech in brain activities. The previous research results show that imagining a word in the mind causes changes in the brain signals. These changes are interchangeable among different words. As a result, discriminating between... 

    Designing an Emotion Capturing System Using Eeg Signals and Human-obot Interaction Platform Based on the Captured Emotion

    , M.Sc. Thesis Sharif University of Technology Nazemi Harandi, Hamed (Author) ; Taheri, Alireza (Supervisor) ; Meghdari, Ali (Supervisor) ; Ghazizadeh, Ali (Co-Supervisor)
    Abstract
    Emotions are one of the most important issues which affects daily life and activities. On the other hand, robots play an increasing role in human life and play a fundamental role in meeting our needs. One of these basic roles is empathy and verbal interaction between the robot and human. In this research, participant's emotions were stimulated in two ways: by using OASIS and GAPED image data sets and by instructing the participants to remind about their good or bad memories. During emotional stimulation, EEG signals have been recorded for the training and testing process. The preprocessing of training data includes filtering, removing bad parts of data, removing bad channels and... 

    A New Coupled-HMM Framework with Applications in Multichannel Brain Signal Processing

    , Ph.D. Dissertation Sharif University of Technology Karimi, Sajjad (Author) ; Shamsollahi, Mohammad Bagher (Supervisor)
    Abstract
    The human brain can be described as a dynamic system with multiple subsystems interacting with one another and multi-channel observations of these subsystems are available. The modeling of a system from its observations allows us to gain insight into how its various components interact with one another and also provides intuition about the desired system. Hidden Markov Model (HMM) is a probabilistic model with hidden states that is suitable for modeling these types of systems. Multi-channel observations are available from several subsystems interacting with each other within a general system. In this case, it may be necessary to develop more comprehensive models incorporating multi-channel... 

    Epileptic Signal Denoising Using Morphological Component Analysis Based on Dictionary Learning

    , M.Sc. Thesis Sharif University of Technology Ilmak Foroosh, Arman (Author) ; Shamsollahi, Mohammad Bagher (Supervisor)
    Abstract
    The prevalence of epilepsy in the world and the need for surgery to treat patients have made it essential to locate the site of epilepsy before surgery. One method is to apply source localization algorithms to the EEG signals of epileptic patients in the ictal and interictal periods. However, because these signals are contaminated with various noises, they are challenging to interpret and require noise cancellation. Therefore, various methods have been proposed to eliminate the noise. Among these methods, a new method recently used to remove noise from the epileptic signal is Morphological Component Analysis (MCA). This method uses the basic concepts of sparse representation of signals to... 

    Design and Implementation of an Optical Intrinsic Signal Imaging System for Brain by Using Intensity Magnification Algorithm

    , M.Sc. Thesis Sharif University of Technology Alemohammad, Mohammad Amin (Author) ; Fardmanesh, Mahdi (Supervisor) ; Ghazizadeh Ehsaee, Ali (Supervisor)
    Abstract
    In many neuroscience studies, the aim is to investigate the functional role of a population of neurons in response to a certain stimulus. Electrophysiology methods usually can only record from a small population of neurons and this is not sufficient for studying functional properties of the cortex. An alternative is to use functional neuroimaging methods. However, some of these methods are expensive and also they do not offer suitable spatial and temporal resolutions. Optical imaging systems can solve these problems because they are low-cost, easy to design, and also have good temporal and spatial resolutions. These systems can generate functional maps from the brain. In this study, a... 

    Design and Implementation of a P-300 Speller using RSVP Paradigm

    , M.Sc. Thesis Sharif University of Technology Mijani, Amir Mohammad (Author) ; Shamsollahi, Mohammad Bagher (Supervisor)
    Abstract
    The brain-computer interface is an advanced technology in human-machine interaction. The Speller system is a typical use of BCI, in which the target stimulation is detected by the induced signal in the brain. The most commonly speller system, the matrix Speller, has a major disadvantage, and it is Gaze-dependent. Research has proven that target-character selection in the matrix Speller is dependent on eye movement, or as referred to in technical terminology, it is gaze dependent. Therefore, the Speller matrix is not usable for users suffering from unimpaired oculomotor control. Many researchers attempted to overcome this issue, and their results led to two solutions; 1) changing the type of... 

    EEG Based Brain Computer Interface

    , M.Sc. Thesis Sharif University of Technology Abbasi Sisara, Majid (Author) ; Jahed, Mehran (Supervisor)
    Abstract
    Brain-computer interfaces (BCI) are systems which enable a user to control a device using only his or her neural activity. An important part of a brain-computer interface is an algorithm for classifying different commands that the user may want to execute. There are several neurological phenomena that can be used in a BCI. One of them is event related de-synchronization (ERD), which is a temporary decrease in power of the mu and beta brain waves. This phenomenon can be registered using electroencephalography (EEG) and occurs when a subject performs or imagines a limb movement. The goal of this thesis is to implement an algorithm that would be able to classify EEG signal for controlling an... 

    Brain Decoding Across Subjects

    , M.Sc. Thesis Sharif University of Technology Nasiri Ghosheh Bolagh, Samaneh (Author) ; Shamsollahi, Mohammad Bagher (Supervisor)
    Abstract
    In recent years, techniques in articial intelligence have become an important tool in the analysis of physiological signals. While the application of machine learning techniques has proved useful in other elds, researchers have had difficulty proving its utility for the analysis of physiological signals. A major challenge in applying such techniques to the analysis of physiological signals is dealing effectively with inter-patient differences. The morphology and interpretation of physiological signals can vary dep ending on the patient. This poses a problem, since statistical learning techniques aim to estimate the underlying system that produced the data. If the system (or patient) changes... 

    Investigation of Multidimensional Recording Brain Signal (ECoG) For Estimation of 3D Arm Trajectory

    , M.Sc. Thesis Sharif University of Technology Babolhavaeji, Ali (Author) ; Vosughi Vahdat, Bijan (Supervisor)
    Abstract
    The main idea in this project is investigation of multidimensional recording brain signal (ECoG) for estimation of 3D arm trajectory. First we introduce a general structure with variable blocks, in this structure we have many ways to estimate hand trajectory and obtain different result. By statistical test we find the best state of this structure and apply it on other dtae set trials. Electrocorticography (ECoG) has seen recent use in this regard because it offers a higher spatiotemporal resolution than non-invasive EEG and is less invasive than intracortical microelectrodes and have been shown to contain reliable information about the direction of arm Trajectory and movements. We using... 

    Modeling Electrical Activities of the Brain and Analysis of the EEG in General Anesthesia

    , M.Sc. Thesis Sharif University of Technology Molaee Ardakani, Behnam (Author) ; Shamsollahi, Mohammad Bagher (Supervisor)
    Abstract
    In this thesis, an enhanced local mean-field (MF) model that is suitable for simulating the electroencephalogram (EEG) in different depths of anesthesia is presented. The main building elements of the model (e.g. excitatory and inhibitory populations) are taken from two pioneer MF models designed by Steyn-Ross et al and Bojak & Liley, and then a new slow ionic mechanism is included in the main model. Generally, in mean-field models, some sigmoid-shape functions determine firing rates of neural populations according to their mean membrane potentials. In the enhanced model, the sigmoid function corresponding to excitatory population is redefined to be also a function of the slow ionic... 

    A new Markovian approach towards neural spike sorting

    , Article ICICS 2011 - 8th International Conference on Information, Communications and Signal Processing, 13 December 2011 through 16 December 2011 ; Dec , 2011 , Page(s): 1 - 5 ; 9781457700309 (ISBN) Samiee, S ; Shamsollahi, M. B ; Vigneron, V ; Sharif University of Technology
    Abstract
    Brain is the most complicated organ of body. It controls the activity of all other organs. Understanding its function and its language could give us a direct communication pathway for connecting with injured motor organ and it could be the core of functional repairing. Neurons are the vertices of a vast network that generates the brain signals. Neuronal recordings capture brain activity signatures. The processing of these signals can help to translate brain's language. Usually it follows three main stages: spike detection and extraction, spike sorting, and intention extraction from the encoded signal. In this work, we introduce an original idea based on Hidden Markov Models (HMM) which helps... 

    Five-class finger flexion classification using ECoG signals

    , Article 2010 International Conference on Intelligent and Advanced Systems, ICIAS 2010, 15 June 2010 through 17 June 2010 ; 2010 ; 9781424466238 (ISBN) Samiee, S ; Hajipour, S ; Shamsollahi, M. B ; Sharif University of Technology
    Abstract
    Increasing the number of car accidents and other cerebral disease cause to progress in using Brain-Compute Interface (BCI) as a common subject for research and treatment. The aim of Brain-Computer Interface system is to establish a new communication system that translates human intentions, reflected by brain signals, into a control signal for an output device such as a computer. To this end, different processes must be done on brain signals and these signals must be classified by suitable methods. There are various methods to classify ECoG signals which are different in features and classifiers. Used features depend on extracted features, feature reduction methods and measures of feature... 

    Visual acuity classification using single trial visual evoked potentials

    , Article Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009, 2 September 2009 through 6 September 2009 ; 2009 , Pages 982-985 ; 9781424432967 (ISBN) Hajipour, S ; Shamsollahi, M. B ; Abootalebi, V ; Sharif University of Technology
    Abstract
    Several researches have been done to identify visual system characteristics. Some of them are based on the processing of the brain signal recordings. Visual evoked potentials (VEPs) are electrical signals which are produced in response to the visual stimuli and recorded by means of electrodes placed on the head. These signals are usually characterized by the amplitude and latency of their peaks. Different types of visual stimuli and visual system characteristics can affect the shape and hence the characteristics of VEPs. In this paper, proper visual stimuli were used and VEPs were recorded in order to classify visual acuity. To achieve this goal, visual evoked potentials were recorded and... 

    Fast temporal path localization on graphs via multiscale viterbi decoding

    , Article IEEE Transactions on Signal Processing ; Volume 66, Issue 21 , 2018 , Pages 5588-5603 ; 1053587X (ISSN) Yang, Y ; Chen, S ; Maddah Ali, M. A ; Grover, P ; Kar, S ; Kovacevic, J ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2018
    Abstract
    We consider a problem of localizing a temporal path signal that evolves over time on a graph. A path signal represents the trajectory of a moving agent on a graph in a series of consecutive time stamps. Through combining dynamic programing and graph partitioning, we propose a path-localization algorithm with significantly reduced computational complexity. To analyze the localization performance, we use two evaluation metrics to quantify the localization error: The Hamming distance and the destination's distance between the ground-truth path and the estimated path. In random geometric graphs, we provide a closed-form expression for the localization error bound, and a tradeoff between... 

    Extraction and automatic grouping of joint and individual sources in multi-subject fMRI data using higher order cumulants

    , Article IEEE Journal of Biomedical and Health Informatics ; 24 May , 2018 ; 21682194 (ISSN) Pakravan, M ; Shamsollahi, M. B ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2018
    Abstract
    The joint analysis of multiple datasets to extract their interdependency information has wide applications in biomedical and health informatics. In this paper, we propose an algorithm to extract joint and individual sources of multi-subject datasets by using a deflation based procedure, which is referred to as joint/individual thin independent component analysis (JI-ThICA). The proposed algorithm is based on two cost functions utilizing higher order cumulants to extract joint and individual sources. Joint sources are discriminated by fusing signals of all subjects, whereas individual sources are extracted separately for each subject. Furthermore, JI-ThICA algorithm estimates the number of... 

    Extraction and automatic grouping of joint and individual sources in multisubject fMRI data using higher order cumulants

    , Article IEEE Journal of Biomedical and Health Informatics ; Volume 23, Issue 2 , 2019 , Pages 744-757 ; 21682194 (ISSN) Pakravan, M ; Shamsollahi, M. B ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2019
    Abstract
    The joint analysis of multiple data sets to extract their interdependency information has wide applications in biomedical and health informatics. In this paper, we propose an algorithm to extract joint and individual sources of multisubject data sets by using a deflation-based procedure, which is referred to as joint/individual thin independent component analysis (JI-ThICA). The proposed algorithm is based on two cost functions utilizing higher order cumulants to extract joint and individual sources. Joint sources are discriminated by fusing signals of all subjects, whereas individual sources are extracted separately for each subject. Furthermore, JI-ThICA algorithm estimates the number of...