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    Study of Enzyme (Chymotrypsin) -Core/Shell (Fe3O4 @ Au) Nanoparticle Bioconjugate

    , M.Sc. Thesis Sharif University of Technology Kamal Ahmadi, Mahmoud (Author) ; Vosoughi, Manoochehr (Supervisor) ; Seyf Kordi, Ali Akbar (Supervisor)
    Abstract
    Conjugation of proteins to nanoparticles has numerous applications in sensing, imaging, delivery, catalysis, therapy and control of protein structure and activity. Therefore, characterizing the nanoparticle–protein interface is of great importance. A variety of covalent and non-covalent linking chemistries have been reported for nanoparticle attachment. Typically, a specific protein residue is linked directly to the nanoparticle core or to the ligand. As conjugation often affects the protein structure and function, techniques to probe structure and activity are assessed Characterization studies of nanoparticle–protein complexes show that the structure and function are influenced by the... 

    Fabrication of Enzyme Biosensor for Heavy Metal Detection

    , M.Sc. Thesis Sharif University of Technology Jahangirzadeh, Mir Ali (Author) ; Borghei, Mehdi (Supervisor) ; Sabzi, Reza (Supervisor)
    Abstract
    In this project identification of heavy metals has been studied by using glucose oxidase enzyme. Measurement of heavy metals such as mercury (II) nitrate, lead (II) nitrate and cadmium nitrate are based on inhibitory of glucose oxidase enzyme. To do this, two modified electrodes has stabilized on a graphite electrode. Nanocomposite of single wall carbon nanotube with Nile Blue is foundation of the first working electrode. Biological component of the electrode is glucose oxidase enzyme that bovine serum albumin and glutaraldehyde are helping enzyme in immobilization and these materials cause enzyme to cross link with the foundation. This biosensor has great stability and suitable linear... 

    Comparing the Performance of Centrifuge, Membrane Filter and Filter Press for Clarification of Lipase Enzyme

    , M.Sc. Thesis Sharif University of Technology Taher Aslani, Ahmad Reza (Author) ; Rousta Azad, Reza (Supervisor)
    Abstract
    Lipases (Triacyl Glycerol Acyl Hydrolase, EC.3.1.1.3) are multidimensional biocatalysts which have many applications in food industrials, dairy, fats and oils processing, detergents, synthesis of pure chemical and pharmaceutical materials, paper industrial and cosmetics. Generally, industrial enzymes are produced extracellularly, so their separation from a low-cost complex medium (usually used for production) is one of the cost stages in their production process. Filtration is the most economical method of separation in the production of enzymes, but due to the small size of colloidal particles and cell masses present in the fermentation environment, its use is subject to limitations. In... 

    Experimental Study of Biological Synthesis, Stabilization and Delivery of the Recombinant Protein of Chondroitinase

    , Ph.D. Dissertation Sharif University of Technology Askaripour, Hossein (Author) ; Vossoughi, Manouchehr (Supervisor) ; Alemzadeh, Iran (Supervisor) ; Khajeh, Khosro (Supervisor)
    Abstract
    In this research, immobilization method was employed to increase the thermal stability of Chondroitinase ABC I (cABC I) enzyme. In first step, magnetite nanoparticle (Fe3O4) was selected as a support and cABC I enzyme was attached via the adsorption method. The results showed that pH=6.5, temperature 15 ˚C, enzyme-to-support mass ratio 0.75, and incubation time 4.5 hr were the appropriate conditions for immobilizing cABC I enzyme on Fe3O4 nanoparticle. It was also found that the optimum pH for free and immobilized enzymes was 7.6 and 8.0, respectively. The maximum activity of free enzyme was obtained at 25 ˚C, whereas the activity of immobilized enzyme was almost constant in the temperature... 

    Investigating on Filtration of Solid Particles in Culture Media after Fermentation

    , M.Sc. Thesis Sharif University of Technology Maleki, Maziar (Author) ; Roosta Azad, Reza (Supervisor)
    Abstract
    In biotechnology processes, in addition of culture media there is a solid phase which dispensed across the system.In most of bioprocesses, first operational unit for downstream treatment is the separation of this particles from fermentation liquor. In contrast with other categories like inorganic chemistry, solid particles in fermentation liquor (which the main part of it is biomass itself) have complicated physical & rheological properties. For example, all of biomass species are hydrophilic and sometimes form colloidal solutions.With this perspective, separation of solid phase from fermentation liquor is a hard challenge in this kind of processes.In this research, with regard of great... 

    Processing Fermented Lipase

    , M.Sc. Thesis Sharif University of Technology Asadollahi Chaghoosh, Aida (Author) ; Roosta Azad, Reza (Supervisor) ; Yeganeh Sarkandi, Shahin (Supervisor)
    Abstract
    Lipases (triacylglycerol acylhydrolases) are industrial enzymes that have wide applications in the detergent, pharmaceutical and food industries. Pseudomonas aeruginosa strain is known to be suitable for lipase production due to its stability in organic solvents, resistance to temperature and pH. Lipases are usually secreted extracellularly, and its isolation from the culture medium is very important. The most cost-effective separation method is filtration which is more economical than centrifuge. Here, the use of filtration method is important from two aspects of creating clearance and maintaining enzyme activity. The equipment in this research is the filter press, whose initial tests are... 

    Evaluation of the effects of fullerene c60 nanoparticles on oxidative stress parameters in normal rats liver and brain

    , Article Journal of Advances in Medical and Biomedical Research ; Volume 27, Issue 124 , 2019 , Pages 8-15 ; 26766264 (ISSN) Namadr, F ; Bahrami, F ; Bahri, Z ; Ghanbari, B ; Elahi, S. A ; Mohammadi, M. T ; Sharif University of Technology
    Zanjan University of Medical Sciences and Health Services  2019
    Abstract
    Background & Objective: The potent antioxidant property of fullerene C60 nanoparticles and their derivatives has been demonstrated in a wide range of in vitro and in vivo studies. Hence, we examined the effects of fullerene C60 on the oxidative stress parameters in brain and liver of the rats in normal situation. Materials & Methods: The study was performed in two groups of Wistar rats (each group, n = 6); normal and fullerene-treated normal animals. Treated rats received fullerene via oral gavage at dose of 1 mg/kg/day for 60 days. At termination of the study, the oxidative stress parameters were determined in brain and liver tissues, including the contents of glutathione (GSH) and... 

    Targeting AMPK signaling pathway by natural products for treatment of diabetes mellitus and its complications

    , Article Journal of Cellular Physiology ; Volume 234, Issue 10 , 2019 , Pages 17212-17231 ; 00219541 (ISSN) Joshi, T ; Singh, A. K ; Haratipour, P ; Sah, A. N ; Pandey, A. K ; Naseri, R ; Juyal, V ; Farzaei, M. H ; Sharif University of Technology
    Wiley-Liss Inc  2019
    Abstract
    Diabetes affects a large population of the world. Lifestyle, obesity, dietary habits, and genetic factors contribute to this metabolic disease. A target pathway to control diabetes is the 5′-adenosine monophosphate-activated protein kinase (AMPK) signaling pathway. AMPK is a heterotrimeric protein with α, β, and γ subunits. In several studies, AMPK activation enhanced glucose uptake into cells and inhibited intracellular glucose production. Impairment of AMPK activity is present in diabetes, according to some studies. Drugs used in the treatment of diabetes, such as metformin, are also known to act through regulation of AMPK. Thus, drugs that activate and regulate AMPK are potential... 

    Optimization of l-asparaginase immobilization onto calcium alginate beads

    , Article Chemical Engineering Communications ; Volume 204, Issue 2 , 2017 , Pages 216-220 ; 00986445 (ISSN) Bahraman, F ; Alemzadeh, I ; Sharif University of Technology
    Taylor and Francis Ltd  2017
    Abstract
    In this study, anti-leukemic enzyme L-asparaginase (E.C.3.5.1.1) from Escherichia coli ATCC 11303 was modified by the microencapsulation technique onto calcium alginate beads. Using response surface methodology (RSM), a three-level full factorial design, the values of concentration of sodium alginate, concentration of calcium chloride, and enzyme loading were investigated to obtain the highest residual L-asparaginase (L-ASNase) activity % (immobilized enzyme activity/free enzyme activity). The effects of the studied factors on immobilization were evaluated The predicted values by the model were close to the experimental values, indicating suitability of the model. The results presented that... 

    Magnetite nanoparticle as a support for stabilization of chondroitinase ABCI

    , Article Artificial Cells, Nanomedicine and Biotechnology ; Volume 47, Issue 1 , 2019 , Pages 2721-2728 ; 21691401 (ISSN) Askaripour, H ; Vossoughi, M ; Khajeh, K ; Alemzadeh, I ; Sharif University of Technology
    Taylor and Francis Ltd  2019
    Abstract
    Chondroitinase ABCI (cABCI) is a drug enzyme that can be used to treat spinal cord injuries. Due to low thermal stability of cABCI, this enzyme was immobilized on Fe3O4 nanoparticle to increase its thermal stability. The size and morphology, structure and magnetic property of the Fe3O4 nanoparticles were characterized by the analyses of SEM, XRD and VSM, respectively, and FTIR spectroscopy was employed to confirm the immobilization of cABCI on the surface of Fe3O4 nanoparticles. The results indicated that the optimum conditions for pH, temperature, cABCI-to-Fe3O4 mass ratio and incubation time in immobilization process were 6.5, 15 °C, 0.75 and 4.5 h, respectively, and about 0.037 mg cABCI... 

    Expression of functional recombinant human tissue transglutaminase (TG2) using the bac-to-bac baculovirus expression system

    , Article Advanced Pharmaceutical Bulletin ; Volume 6, Issue 1 , 2016 , Pages 49-56 ; 22285881 (ISSN) Yazdani, Y ; Azari, S ; Kalhor, H. R ; Sharif University of Technology
    Tabriz University of Medical Sciences 
    Abstract
    Tissue transglutaminase (TG2) is a unique multifunctional enzyme. The enzyme possesses enzymatic activities such as transamidation/crosslinking and non-enzymatic functions such as cell migration and signal transduction. TG2 has been shown to be involved in molecular mechanisms of cancers and several neurodegenerative diseases such as Alzheimer's disease. The present study aimed at cloning and expression of full length human TG2 in Bac-to-Bac baculovirus expression system and evaluation of its activity. Methods: pFastBac HTA donor vector containing coding sequence of human TG2 was constructed. The construct was transformed to DH10Bac for generating recombinant bacmid. The verified bacmid was... 

    Determination of heavy metal ions by an amperometric biosensor based on glucose oxidase immobilized onto single-walled carbon nanotubes/Nile blue nanocomposite

    , Article Journal of the Iranian Chemical Society ; Volume 15, Issue 8 , 2018 , Pages 1765-1774 ; 1735207X (ISSN) Jahangirzadeh Varjovi, M ; Sabzi, R. E ; Borghei, S. M ; Sharif University of Technology
    Springer Verlag  2018
    Abstract
    An enzymatic electrochemical biosensor was prepared based on glucose oxidase (GOD) immobilized on single-walled carbon nanotubes/Nile blue (Nb–SWCNTs) nanocomposite cross-linked with glutaraldehyde on graphite electrode. The function of glucose biosensor is based on the electrocatalytic reduction of H2O2 generated by the reaction of the enzyme with glucose molecules. The biosensor was characterized by Fourier transform infrared (FTIR) spectroscopy, emission scanning (FESEM), UV–Vis spectrometry, and voltammetric and amperometric methods. Parameters influencing the performance of the biosensor, namely pH and applied potential, were optimized. Inhibition was carried out for the detection of... 

    Modeling, simulation, and employing dilution–dialysis microfluidic chip (DDMC) for heightening proteins refolding efficiency

    , Article Bioprocess and Biosystems Engineering ; Volume 41, Issue 5 , 2018 , Pages 707-714 ; 16157591 (ISSN) Kashanian, F ; Masoudi, M. M ; Shamloo, A ; Habibi Rezaei, M ; Moosavi Movahedi, A. A ; Sharif University of Technology
    Springer Verlag  2018
    Abstract
    Miniaturized systems based on the principles of microfluidics are widely used in various fields, such as biochemical and biomedical applications. Systematic design processes are demanded the proper use of these microfluidic devices based on mathematical simulations. Aggregated proteins (e.g., inclusion bodies) in solution with chaotropic agents (such as urea) at high concentration in combination with reducing agents are denatured. Refolding methods to achieve the native proteins from inclusion bodies of recombinant protein relying on denaturant dilution or dialysis approaches for suppressing protein aggregation is very important in the industrial field. In this paper, a modeling approach is... 

    Improved wear, mechanical, and biological behavior of UHMWPE-HAp-zirconia hybrid nanocomposites with a prospective application in total hip joint replacement

    , Article Journal of Materials Science ; 2018 ; 00222461 (ISSN) Salari, M ; Mohseni Taromsari, S ; Bagheri, R ; Faghihi Sani, M. A ; Sharif University of Technology
    Springer New York LLC  2018
    Abstract
    Medical engineering advances in total joint replacements and societies’ rising demand for long-lasting materials have proven it essential to manufacture materials that are more similar to the original tissue in the fields of mechanical, tribological, and biological properties. Ultra-high molecular weight polyethylene (UHMWPE) is a polymer widely used in arthroplasty applications due to its biocompatibility, chemical stability, and reasonable mechanical properties; however, it still fails to entirely meet the standards of the hip joint implant. In this study, different concentrations of nanosized zirconia were added to UHMWPE and HAp matrix with an intended application in arthroplasty.... 

    Improved wear, mechanical, and biological behavior of UHMWPE-HAp-zirconia hybrid nanocomposites with a prospective application in total hip joint replacement

    , Article Journal of Materials Science ; Volume 54, Issue 5 , 2019 , Pages 4259-4276 ; 00222461 (ISSN) Salari, M ; Mohseni Taromsari, S ; Bagheri, R ; Faghihi Sani, M. A ; Sharif University of Technology
    Springer New York LLC  2019
    Abstract
    Medical engineering advances in total joint replacements and societies’ rising demand for long-lasting materials have proven it essential to manufacture materials that are more similar to the original tissue in the fields of mechanical, tribological, and biological properties. Ultra-high molecular weight polyethylene (UHMWPE) is a polymer widely used in arthroplasty applications due to its biocompatibility, chemical stability, and reasonable mechanical properties; however, it still fails to entirely meet the standards of the hip joint implant. In this study, different concentrations of nanosized zirconia were added to UHMWPE and HAp matrix with an intended application in arthroplasty.... 

    Fabrication of biocompatible titanium scaffolds using space holder technique

    , Article Journal of Materials Science: Materials in Medicine ; Volume 23, Issue 10 , 2012 , Pages 2483-2488 ; 09574530 (ISSN) Dezfuli, S. N ; Sadrnezhaad, S. K ; Shokrgozar, M. A ; Bonakdar, S ; Sharif University of Technology
    Springer  2012
    Abstract
    Open-pore titanium scaffolds were fabricated by sintering of compressed mixtures of TiH1.924 and urea. Spherical and irregular shaped space holders were used to investigate the effect of pore shape on cellular behavior. After removal of the space holder, the shape of the spacers was replicated to the pores. Average diameter of the pores was in the range of 300-600 lm. SEM images showed that titanium hydride resulted in higher surface roughness and larger micro porosities than pure titanium. In vitro evaluationswere carried out by using MTT assay, measuring alkaline phosphatase activity and alizarin red staining in flow perfusion bioreactor for cell culture. Observations revealed excellent... 

    Intravenous laser wavelength radiation effect on LCAT, PON1, catalase, and FRAP in diabetic rats

    , Article Lasers in Medical Science ; Volume 35, Issue 1 , 2020 , Pages 131-138 Amjadi, A ; Mirmiranpour, H ; Sobhani, S. O ; Moazami Goudarzi, N ; Sharif University of Technology
    Springer  2020
    Abstract
    The main purpose of this study is to evaluate the effect of intravenous irradiation of different low-level laser wavelengths on the activity of lecithin-cholesterol acyltransferase (LCAT), paraoxonase (PON1), catalase, and ferric reducing ability of plasma (FRAP) in diabetic rats. First, diabetes was induced in rats using streptozotocin (STZ). Enzymes’ activity was measured in the blood samples and compared before and after intravenous laser blood irradiation. We used four continuous-wave lasers—IR (λ = 808 nm), Red (λ = 638 nm), Green (λ = 532 nm), and Blue (λ = 450 nm)—to compare the wavelength’s effect on different enzymes’ activity. Laser power was fixed at 0.01 mW and laser energy was... 

    Fast chromium removal by Shewanella sp.: an enzymatic mechanism depending on serine protease

    , Article International Journal of Environmental Science and Technology ; Volume 17, Issue 1 , April , 2020 , Pages 143-152 Kheirabadi, M ; Mahmoodi, R ; Mollania, N ; Kheirabadi, M ; Sharif University of Technology
    Springer  2020
    Abstract
    Environmental pollutions with heavy metals pose serious health and ecological risks. Sabzevar in the northeast of Iran has natural chromic mines and then chromium-polluted soils and groundwater. In the present work, the metal-tolerant bacterial strain KR2 was identified as Shewanella sp. following 16S rDNA gene sequence analysis. Bioremediation ability of isolated bacterial from agricultural soils that irrigated by groundwater, Shewanella sp., was evaluated for uptaking of chromium with varying Cr(VI) concentrations from 50 to 500 ppm in aerobic conditions (pH 7.0, 37 °C). The Shewanella sp. strain KR2 showed an obvious heavy metal tolerant in the wide range of heavy metals including: Cr6+,... 

    Improving bactericidal performance of implant composite coatings by synergism between Melittin and tetracycline

    , Article Journal of Materials Science: Materials in Medicine ; Volume 33, Issue 6 , 2022 ; 09574530 (ISSN) Zarghami, V ; Ghorbani, M ; Pooshang Bagheri, K ; Shokrgozar, M. A ; Sharif University of Technology
    Springer  2022
    Abstract
    Methicillin resistance Staphylococcus aureus bacteria (MRSA) are serious hazards of bone implants. The present study was aimed to use the potential synergistic effects of Melittin and tetracycline to prevent MRSA associated bone implant infection. Chitosan/bioactive glass nanoparticles/tetracycline composite coatings were deposited on hydrothermally etched titanium substrate. Melittin was then coated on composite coatings by drop casting method. The surfaces were analyzed by FTIR, XRD, and SEM instruments. Tetracycline in coatings revealed multifunctional behaviors include bone regeneration and antibacterial activity. Releasing ALP enzyme from MC3T3 cells increased by tetracycline, so it is... 

    A numerical model for predicting hepatocytes ureagenesis and its related inborn enzyme deficiencies: case studies

    , Article Scientia Iranica ; Volume 26, Issue 1B , 2019 , Pages 408-420 ; 10263098 (ISSN) Sharifi, F ; Firoozabadi, B ; Saidi, M. S ; Firoozbakhsh, K ; Sharif University of Technology
    Sharif University of Technology  2019
    Abstract
    One important functionality of liver cells is ammonia detoxification and urea production. In this study, a numerical model of the urea cycle in hepatocytes was developed. Navier Stokes and convection equations were employed to study the process of ammonia elimination and urea production using a microfluidic channel. The concentration of urea and ammonia throughout the channel was obtained. Furthermore, the urea cycle was modelled with respect to its four main enzymes. This resulted in twelve rate equations that were solved to determine the concentration of each metabolite participating in the urea cycle. Application of results implied common disorders such as hyperammonemia types I and II...