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    Quantum Information Processing with NMR Spectroscopy

    , M.Sc. Thesis Sharif University of Technology Salimi Moghadam, Mahkameh (Author) ; Raeisi, Sadegh (Supervisor)
    Abstract
    Quantum Information Processing (QIP) is one of the active areas of research in both theoretical and experimental physics. Any experimental technique that is used for a scalable implementation of QIP must satisfy DiVincenzo’s criteria [17]. Nuclear Magnetic Resonance (NMR) satisfies many of these conditions, but it is not scalable and cannot initialize the qubits to pure state [28]. NMR can be a great platform for studying the fundamentals of QIP. In this project, for a two­qubit system, we prepare pseudo pure states from the initial mixed states by using unitary operations and implement CNOT gates. According to the results of our experiments, we can apply all the gates with high fidelity.... 

    Patients' attitudes towards the role of dentists in tobacco cessation counselling after a brief and simple intervention [Attitudes des patients vis-à-vis du rôle des dentistes en matière de conseils dans le sevrage tabagique après une intervention simple et brève]

    , Article Eastern Mediterranean Health Journal ; Vol. 20, issue. 2 , 2014 , p. 82-89 Ebn Ahmady, A ; Homayoun, A ; Lando, H. A ; Haghpanah, F ; Khoshnevisan, M. H ; Sharif University of Technology
    Abstract
    Dental professionals are in a unique position to promote smoking cessation among their patients. We evaluated the effects of a brief counselling intervention by a dentist on patients' attitude towards the role of dentists in tobacco cessation programmes. In a semi-experimental study in Tehran, Islamic Republic of Iran, 70 eligible smokers were selected and randomly assigned to intervention and control groups. The initial attitudes of the patients regarding tobacco cessation counselling services provided by the dentist were determined using a validated questionnaire. The intervention group received a brief chair-side counselling by a dentist based on the 5 A's approach, while no intervention... 

    Multivariate curve resolution-particle swarm optimization: A high-throughput approach to exploit pure information from multi-component hyphenated chromatographic signals

    , Article Analytica Chimica Acta ; Volume 772 , 2013 , Pages 16-25 ; 00032670 (ISSN) Parastar, H ; Ebrahimi Najafabadi, H ; Jalali Heravi, M ; Sharif University of Technology
    2013
    Abstract
    Multivariate curve resolution-particle swarm optimization (MCR-PSO) algorithm is proposed to exploit pure chromatographic and spectroscopic information from multi-component hyphenated chromatographic signals. This new MCR method is based on rotation of mathematically unique PCA solutions into the chemically meaningful MCR solutions. To obtain a proper rotation matrix, an objective function based on non-fulfillment of constraints is defined and is optimized using particle swarm optimization (PSO) algorithm. Initial values of rotation matrix are calculated using local rank analysis and heuristic evolving latent projection (HELP) method. The ability of MCR-PSO in resolving the chromatographic... 

    Prevalence of smoking in 15-64 years old population of North of Iran: Meta-analysis of the results of non-communicable diseases risk factors surveillance system

    , Article Acta Medica Iranica ; Volume 51, Issue 7 , 2013 , Pages 494-500 ; 00446025 (ISSN) Ardeshiri, M. J ; Moosazadeh, M ; Masouleh, M. F ; Kiani, A ; Fakhri, M ; Sharif University of Technology
    2013
    Abstract
    Smoking is known as a major cause of chronic obstructive pulmonary disease (COPD) and hence immediate and effective interventions are required for its elimination. This study aimed to collect valid data with regard to cigarette smoking in adult population of north of Iran for policy making by a meta-analysis of the documents of national non-communicable disease risk factors surveillance system. We investigated relevant evidences by searching in published and non-electronic databases. Data were extracted based on variables such as year of the study, sex, age group and prevalence of smoking habit. Based on results of heterogeneity, we applied fixed or random effects model to estimate the... 

    Hammerstein-Wiener model: A new approach to the estimation of formal neural information

    , Article Basic and Clinical Neuroscience ; Volume 3, Issue 4 , 2012 , Pages 45-51 ; 2008126X (ISSN) Abbasi Asl, R ; Khorsandi, R ; Vosooghi Vahdat, B ; Sharif University of Technology
    Abstract
    A new approach is introduced to estimate the formal information of neurons. Formal Information, mainly discusses about the aspects of the response that is related to the stimulus. Estimation is based on introducing a mathematical nonlinear model with Hammerstein-Wiener system estimator. This method of system identification consists of three blocks to completely describe the nonlinearity of input and output and linear behaviour of the model. The introduced model is trained by 166 spikes of neurons and other 166 spikes are used to test and validate the model. The simulation results show the R-Value of 92.6 % between estimated and reference information rate. This shows improvement of 1.41 % in... 

    Topological pattern selection in recurrent networks

    , Article Neural Networks ; Volume 31 , 2012 , Pages 22-32 ; 08936080 (ISSN) Bahraini, A ; Abbassian, A ; Sharif University of Technology
    2012
    Abstract
    The impact of adding correlation to a population of neurons on the information and the activity of the population is one of the fundamental questions in recent system neuroscience. In this paper, we would like to introduce topology-based correlation at the level of storing patterns in a recurrent network. We then study the effects of topological patterns on the activity and memory capacity of the network. The general aim of the present work is to show how the repertoire of possible stored patterns is determined by the underlying network topology.Two topological probability rules for pattern selection in recurrent network are introduced. The first one selects patterns according to a... 

    Learning low-rank kernel matrices for constrained clustering

    , Article Neurocomputing ; Volume 74, Issue 12-13 , 2011 , Pages 2201-2211 ; 09252312 (ISSN) Baghshah, M. S ; Shouraki, S. B ; Sharif University of Technology
    2011
    Abstract
    Constrained clustering methods (that usually use must-link and/or cannot-link constraints) have been received much attention in the last decade. Recently, kernel adaptation or kernel learning has been considered as a powerful approach for constrained clustering. However, these methods usually either allow only special forms of kernels or learn non-parametric kernel matrices and scale very poorly. Therefore, they either learn a metric that has low flexibility or are applicable only on small data sets due to their high computational complexity. In this paper, we propose a more efficient non-linear metric learning method that learns a low-rank kernel matrix from must-link and cannot-link... 

    Optical flow-based obstacle avoidance of a fixed-wing MAV

    , Article Aircraft Engineering and Aerospace Technology ; Volume 83, Issue 2 , 2011 , Pages 85-93 ; 00022667 (ISSN) Rezaei, M ; Saghafi, F ; Sharif University of Technology
    2011
    Abstract
    Purpose - The purpose of this paper is to describe optical flow-based navigation of a very light fixed-wing aircraft in flight between obstacles. Design/methodology/approach - The optical flow information of two cameras mounted on the aircraft is used to detect the obstacle. It is assumed that the image processing has been completed and the optical flow vectors have been obtained beforehand. The optical flow is used to detect the obstacles and make a rapid turn manoeuvre for the aircraft. Findings - It is shown that using the optical flow feedback by itself is unable to give a rapid turn to the aircraft and its rate should be employed into the control law. Six degree-of-freedom flight... 

    Presenting an approach for conducting knowledge architecture within large-scale organizations

    , Article PLoS ONE ; Volume 10, Issue 5 , May , 2015 ; 19326203 (ISSN) Varaee, T ; Habibi, J ; Mohaghar, A ; Sharif University of Technology
    Public Library of Science  2015
    Abstract
    Knowledge architecture (KA) establishes the basic groundwork for the successful implementation of a short-term or long-term knowledge management (KM) program. An example of KA is the design of a prototype before a new vehicle is manufactured. Due to a transformation to large-scale organizations, the traditional architecture of organizations is undergoing fundamental changes. This paper explores the main strengths and weaknesses in the field of KA within large-scale organizations and provides a suitable methodology and supervising framework to overcome specific limitations. This objective was achieved by applying and updating the concepts from the Zachman information architectural framework... 

    Novel class detection in data streams using local patterns and neighborhood graph

    , Article Neurocomputing ; Volume 158 , June , 2015 , Pages 234-245 ; 09252312 (ISSN) ZareMoodi, P ; Beigy, H ; Kamali Siahroudi, S ; Sharif University of Technology
    Elsevier  2015
    Abstract
    Data stream classification is one of the most challenging areas in the machine learning. In this paper, we focus on three major challenges namely infinite length, concept-drift and concept-evolution. Infinite length causes the inability to store all instances. Concept-drift is the change in the underlying concept and occurs in almost every data stream. Concept-evolution, in fact, is the arrival of novel classes and is an undeniable phenomenon in most real world data streams. There are lots of researches about data stream classification, but most of them focus on the first two challenges and ignore the last one. In this paper, we propose new method based on ensembles whose classifiers use... 

    Overlapped ontology partitioning based on semantic similarity measures

    , Article 2010 5th International Symposium on Telecommunications, IST 2010, 4 December 2010 through 6 December 2010 ; 2010 , Pages 1013-1018 ; 9781424481835 (ISBN) Etminani, K ; Rezaeian Delui, A ; Naghibzadeh, M ; Sharif University of Technology
    Abstract
    Today, public awareness about the benefits of using ontologies in information processing and the semantic web has increased. Since ontologies are useful in various applications, many large ontologies have been developed so far. But various areas like publication, maintenance, validation, processing, and security policies need further research. One way to better tackle these areas is to partition large ontologies into sub partitions. In this paper, we present a new method to partition large ontologies. For the proposed method, three steps are required: (1) transforming an ontology to a weighted graph, (2) partitioning the graph with an algorithm which recognizes the most important concepts,... 

    Towards obtaining more information from gas chromatography-mass spectrometric data of essential oils: An overview of mean field independent component analysis

    , Article Journal of Chromatography A ; Volume 1217, Issue 29 , 2010 , Pages 4850-4861 ; 00219673 (ISSN) Jalali Heravi, M ; Parastar, H ; Sereshti, H ; Sharif University of Technology
    2010
    Abstract
    Mean field independent component analysis (MF-ICA) along with other chemometric techniques was proposed for obtaining more information from multi-component gas chromatographic-mass spectrometric (GC-MS) signals of essential oils (mandarin and lemon as examples). Using these techniques, some fundamental problems during the GC-MS analysis of essential oils such as varying baseline, presence of different types of noise and co-elution have been solved. The parameters affecting MF-ICA algorithm were screened using a 25 factorial design. The optimum conditions for MF-ICA algorithm were followed by deconvolution of complex GC-MS peak clusters. The number of independent components (ICs) (chemical... 

    A novel laparoscopic grasper with two parallel jaws capable of extracting the mechanical behaviour of soft tissues

    , Article Journal of Medical Engineering and Technology ; Volume 41, Issue 5 , 2017 , Pages 339-345 ; 03091902 (ISSN) Nazarynasab, D ; Farahmand, F ; Mirbagheri, A ; Afshari, E ; Sharif University of Technology
    Taylor and Francis Ltd  2017
    Abstract
    Data related to force-deformation behaviour of soft tissue plays an important role in medical/surgical applications such as realistically modelling mechanical behaviour of soft tissue as well as minimally invasive surgery (MIS) and medical diagnosis. While the mechanical behaviour of soft tissue is very complex due to its different constitutive components, some issues increase its complexity like behavioural changes between the live and dead tissues. Indeed, an adequate quantitative description of mechanical behaviour of soft tissues requires high quality in vivo experimental data to be obtained and analysed. This paper describes a novel laparoscopic grasper with two parallel jaws capable of... 

    Kernel sparse representation based model for skin lesions segmentation and classification

    , Article Computer Methods and Programs in Biomedicine ; Volume 182 , 2019 ; 01692607 (ISSN) Moradi, N ; Mahdavi Amiri, N ; Sharif University of Technology
    Elsevier Ireland Ltd  2019
    Abstract
    Background and Objectives: Melanoma is a dangerous kind of skin disease with a high death rate, and its prevalence has increased rapidly in recent years. Diagnosis of melanoma in a primary phase can be helpful for its cure. Due to costs for dermatology, we need an automatic system to diagnose melanoma through lesion images. Methods: Here, we propose a sparse representation based method for segmentation and classification of lesion images. The main idea of our framework is based on a kernel sparse representation, which produces discriminative sparse codes to represent features in a high-dimensional feature space. Our novel formulation for discriminative kernel sparse coding jointly learns a... 

    Capturing single-cell heterogeneity via data fusion improves image-based profiling

    , Article Nature Communications ; Volume 10, Issue 1 , 2019 ; 20411723 (ISSN) Rohban, M. H ; Abbasi, H. S ; Singh, S ; Carpenter, A. E ; Sharif University of Technology
    Nature Publishing Group  2019
    Abstract
    Single-cell resolution technologies warrant computational methods that capture cell heterogeneity while allowing efficient comparisons of populations. Here, we summarize cell populations by adding features’ dispersion and covariances to population averages, in the context of image-based profiling. We find that data fusion is critical for these metrics to improve results over the prior alternatives, providing at least ~20% better performance in predicting a compound’s mechanism of action (MoA) and a gene’s pathway. © 2019, The Author(s)  

    The 2017 and 2018 Iranian Brain-Computer interface competitions

    , Article Journal of Medical Signals and Sensors ; Volume 10, Issue 3 , 2020 , Pages 208-216 Aghdam, N ; Moradi, M ; Shamsollahi, M ; Nasrabadi, A ; Setarehdan, S ; Shalchyan, V ; Faradji, F ; Makkiabadi, B ; Sharif University of Technology
    Isfahan University of Medical Sciences(IUMS)  2020
    Abstract
    This article summarizes the first and second Iranian brain-computer interface competitions held in 2017 and 2018 by the National Brain Mapping Lab. Two 64-channel electroencephalography (EEG) datasets were contributed, including motor imagery as well as motor execution by three limbs. The competitors were asked to classify the type of motor imagination or execution based on EEG signals in the first competition and the type of executed motion as well as the movement onset in the second competition. Here, we provide an overview of the datasets, the tasks, the evaluation criteria, and the methods proposed by the top-ranked teams. We also report the results achieved with the submitted algorithms... 

    A novel hybrid BCI speller based on RSVP and SSVEP paradigm

    , Article Computer Methods and Programs in Biomedicine ; Volume 187 , April , 2020 Jalilpour, S ; Hajipour Sardouie, S ; Mijani, A ; Sharif University of Technology
    Elsevier Ireland Ltd  2020
    Abstract
    Background and objective: Steady-state visual evoked potential (SSVEP) and rapid serial visual presentation (RSVP) are useful methods in the brain-computer interface (BCI) systems. Hybrid BCI systems that combine these two approaches can enhance the proficiency of the P300 spellers. Methods: In this study, a new hybrid RSVP/SSVEP BCI is proposed to increase the classification accuracy and information transfer rate (ITR) as compared with the other RSVP speller paradigms. In this paradigm, RSVP (eliciting a P300 response) and SSVEP stimulations are presented in such a way that the target group of characters is identified by RSVP stimuli, and the target character is recognized by SSVEP stimuli.... 

    Optical pattern generator for efficient bio-data encoding in a photonic sequence comparison architecture

    , Article PLoS ONE ; Volume 16, Issue 1 January 2021 , 2021 ; 19326203 (ISSN) Akbari Rokn Abadi, S ; Dijujin, N. H ; Koohi, S ; Sharif University of Technology
    Public Library of Science  2021
    Abstract
    In this study, optical technology is considered as SA issues’ solution with the potential ability to increase the speed, overcome memory-limitation, reduce power consumption, and increase output accuracy. So we examine the effect of bio-data encoding and the creation of input images on the pattern-recognition error-rate at the output of optical Vander-lugt correlator. Moreover, we present a genetic algorithm-based coding approach, named as GAC, to minimize output noises of cross-correlating data. As a case study, we adopt the proposed coding approach within a correlation-based optical architecture for counting k-mers in a DNA string. As verified by the simulations on Salmonella whole-genome,... 

    Optical pattern generator for efficient bio-data encoding in a photonic sequence comparison architecture

    , Article PLoS ONE ; Volume 16, Issue 1 , 2021 ; 19326203 (ISSN) Akbari Rokn Abadi, S ; Dijujin, N. H ; Koohi, S ; Sharif University of Technology
    Public Library of Science  2021
    Abstract
    In this study, optical technology is considered as SA issues’ solution with the potential ability to increase the speed, overcome memory-limitation, reduce power consumption, and increase output accuracy. So we examine the effect of bio-data encoding and the creation of input images on the pattern-recognition error-rate at the output of optical Vander-lugt correlator. Moreover, we present a genetic algorithm-based coding approach, named as GAC, to minimize output noises of cross-correlating data. As a case study, we adopt the proposed coding approach within a correlation-based optical architecture for counting k-mers in a DNA string. As verified by the simulations on Salmonella whole-genome,... 

    RCTP: Regularized common tensor pattern for rapid serial visual presentation spellers

    , Article Biomedical Signal Processing and Control ; Volume 70 , September , 2021 ; 17468094 (ISSN) Jalilpour, S ; Hajipour Sardouie, S ; Sharif University of Technology
    Elsevier Ltd  2021
    Abstract
    Common Spatial Pattern (CSP) is a powerful feature extraction method in brain-computer interface (BCI) systems. However, the CSP method has some deficiencies that limit its beneficiary. First, this method is not useful when data is noisy, and it is necessary to have a large dataset because CSP is inclined to overfit. Second, the CSP method uses just the spatial information of the data, and it cannot incorporate the temporal and spectral information. In this paper, we propose a new CSP-based algorithm which is capable of employing the information in all dimensions of data. Also, by defining the regularization term for each mode of information, we can diminish the noise effects and overfitting...