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    Mathematical Frameworks for the Study of Oscillatory Networks in Neuroscience

    , M.Sc. Thesis Sharif University of Technology Kazemi, Seakineh (Author) ; Fotouhi Firouzabad, Morteza (Supervisor)
    Abstract
    In this thesis, we first introduce the required biological preparations and popular models for modeling single neuron, synapse and cable. Then by introduction of limit cycle oscillators and the necessary prerequisites, investigations are limited to systems involving weakly coupled oscillators. As two examples of such models, famous Kuramoto and Wilson- Cowan models are described. In the following, we introduce some methods for reduction dimension of weakly coupled oscillators and finally we apply one of the expressed methods on the dynamics of cortical network  

    The Neuroscience of Religious Experience: On John Hick Work about Religion and Neuroscience

    , M.Sc. Thesis Sharif University of Technology Mahmoudi Hashemi, Navid (Author) ; Hosseini, Hassan (Supervisor)
    Abstract
    The study of the religious experience is always one of the most important topics in researches related to the religion field. Religious and mystical experiences have always been one of the key religious concepts. The religious experience, like other human experiences, always comes with reactions in the human brain. Study of the religious experience from a neuroscience perspective can help us to answer questions and issues in the field of religious experience and cognitive credit of it. Assessment of what happens in the people’s brain during rituals like meditation or deep concentration provides a good window into understanding of what this means for people, being mystical or religious or... 

    On The Foundation of Cognitive Sciences: A Critique of Neurotheology

    , M.Sc. Thesis Sharif University of Technology Solgi, Farshid (Author) ; Hosseini, Hassan (Supervisor)
    Abstract
    One of the tasks of philosophy of science is to study the pre-suppositions involved in the natural sciences, to study the concepts used in scientific researches and theorizing. Hence, neglecting philosophy and even the modality of philosophical views, can have devastating effects on any science, including psychology (if it can be called science). Wittgenstein believed that in psychology we are confronted with experimental methods and conceptual confusion, and that this confusion does not go away with giving the title of young knowledge to the psychology. The emergence and dominance of behaviorism can be attributed to the effects of positivism and the uncomprehensive interpretation of physics... 

    Brain Inspired Meta Reinforcement Learning Using Brain-Inspired Networks

    , M.Sc. Thesis Sharif University of Technology Razavi Rohani, Roozbeh (Author) ; Soleymani Baghshahi, Mahdih (Supervisor)
    Abstract
    Reinforcement learning is one of the most well-known learning paradigms in biological agents and one of the most used ones for solving plenty of problems. One of the reasons for this widespread use is the low demand for supervising signals. However, the sparsity of the reward signal causes increasing in sample complexity that needs for learning new tasks. This issue makes trouble in multi-task settings, specifically.One of the most promising approaches to learning new tasks by limited interaction with the environment is meta reinforcement learning. An approach in which fast adaption becomes possible by limiting hypothesis space and creating inductive biases by learning meta parameters.... 

    EEG-based Thought to Text Conversion Via Interpretable Deep Networks

    , M.Sc. Thesis Sharif University of Technology Dastani, Saeed (Author) ; Rabiee, Hamid Reza (Supervisor)
    Abstract
    With the advancement of technologies related to electroencephalography signals, brain and computer interfaces, the program has received much attention. This report deals with one of the new and important issues in this field, i.e. converting thought into text. In this research, the letters, words, and sentences that a person thinks or utters in his mind are decoded and converted into text based on electroencephalography signals. There is still no credible and credible information in neuroscience about whether the same patterns of neuronal activity occur in the brain when thinking about similar letters or words. However, the remarkable growth and development of deep neural networks has made... 

    Bohmian Quantum Approach to Mind, Brain, and Machine Interface

    , Ph.D. Dissertation Sharif University of Technology Jamali, Mohammad (Author) ; Golshani, Mehdi (Supervisor)
    Abstract
    The relation of mind and brain has always been a fundamental and challenging problem for science. The study of this subject with the help of modern physics, considering the failure of classical physics and materialistic philosophy in explaining spiritual and mental phenomena, has attracted the attention of contemporary eminent physicist and biologists. This area is known as "quantum consciousness" and involves theories about mind and brain. Among these theories are: Eccles-Beck theory, Heisenberg-James theory (presented by Stapp) and Penrose-Hameroff theory. In dealing with the problem of mind-matter interaction and consciousness, modern physics, psychology and some philosophical schools are... 

    Continual Learning Algorithms Inspired by Human Learning

    , M.Sc. Thesis Sharif University of Technology Banayeeanzadeh, Mohammad Amin (Author) ; Soleymani Baghshah, Mahdieh (Supervisor)
    Abstract
    Despite the remarkable success of deep learning algorithms in recent years, it still has a long way to reach the status of human natural intelligence and to acquire the expected self-autonomy. As a result, many researchers in this field have focused on the development of these algorithms while taking inspiration from human cognitive behaviors. One of the disadvantages of current algorithms is the lack of their ability to learn in a continual manner while deployed in the environment. More precisely, deep learning models are not able to gradually gather knowledge from the environment and if they are in a situation of limited access to data, they will suffer from catastrophic forgetting; a... 

    Critical behavior at the onset of synchronization in a neuronal model

    , Article Physica A: Statistical Mechanics and its Applications ; Volume 587 , 2022 ; 03784371 (ISSN) Safaeesirat, A ; Moghimi Araghi, S ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    It has been observed experimentally that the neural tissues generate highly variable and scale-free distributed outbursts of activity both in vivo and in vitro. Understanding whether these heterogeneous patterns of activity come from operation of the brain at the edge of a phase transition is an interesting possibility. Therefore, constructing a simple model that exhibits such behavior is of great interest. Additionally, the presence of both critical behavior and oscillatory patterns in brain dynamics is a very interesting phenomenon: Oscillatory patterns define a temporal scale, while criticality imposes scale-free characteristics. In this paper, we consider a model for a neuronal... 

    Complementary hemispheric lateralization of language and social processing in the human brain

    , Article Cell Reports ; Volume 41, Issue 6 , 2022 ; 22111247 (ISSN) Rajimehr, R ; Firoozi, A ; Rafipoor, H ; Abbasi, N ; Duncan, J ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    Humans have a unique ability to use language for social communication. The neural architecture for language comprehension and production may have prominently emerged in the brain areas that were originally involved in social cognition. Here, we directly tested the fundamental link between language and social processing using functional magnetic resonance data (MRI) data from over 1,000 human subjects. Cortical activations in language and social tasks showed a striking similarity with a complementary hemispheric lateralization. Within core language areas, left-lateralized activations in the language task were mirrored by right-lateralized activations in the social task. Outside these areas,... 

    Analysis and data-based reconstruction of complex nonlinear dynamical systems : using the methods of stochastic processes

    , Book Rahimi Tabar, M. Reza
    Springer International Publishing  2019
    Abstract
    This book focuses on a central question in the field of complex systems: Given a fluctuating (in time or space), uni- or multi-variant sequentially measured set of experimental data (even noisy data), how should one analyse non-parametrically the data, assess underlying trends, uncover characteristics of the fluctuations (including diffusion and jump contributions), and construct a stochastic evolution equation?
    Here, the term "non-parametrically" exemplifies that all the functions and parameters of the constructed stochastic evolution equation can be determined directly from the measured data.
    The book provides an overview of methods that have been developed for the analysis of... 

    Joint, partially-joint, and individual independent component analysis in multi-subject fMRI data

    , Article IEEE Transactions on Biomedical Engineering ; Volume 67, Issue 7 , 2020 , Pages 1969-1981 Pakravan, M ; Shamsollahi, M. B ; Sharif University of Technology
    IEEE Computer Society  2020
    Abstract
    Objective: Joint analysis of multi-subject brain imaging datasets has wide applications in biomedical engineering. In these datasets, some sources belong to all subjects (joint), a subset of subjects (partially-joint), or a single subject (individual). In this paper, this source model is referred to as joint/partially-joint/individual multiple datasets unidimensional (JpJI-MDU), and accordingly, a source extraction method is developed. Method: We present a deflation-based algorithm utilizing higher order cumulants to analyze the JpJI-MDU source model. The algorithm maximizes a cost function which leads to an eigenvalue problem solved with thin-SVD (singular value decomposition)... 

    A proposed mechanism for mind-brain interaction using extended Bohmian quantum mechanics in Avicenna's monotheistic perspective

    , Article Heliyon ; Volume 5, Issue 7 , July , 2019 ; 24058440(ISSN) Jamali, M ; Golshani, M ; Jamali, Y ; Sharif University of Technology
    Elsevier Ltd  2019
    Abstract
    In quantum approaches to consciousness, the authors try to propose a model and mechanism for the mind-brain interaction using modern physics and some quantum concepts which do not exist in the classical physics. The independent effect of mind on the brain has been one of the challenging issues in the history of science and philosophy. In some recent mind-brain interaction models, the direct influence of mind on matter is either not accepted (as in Stapp's model) or not clear, and there have not been any clear mechanism for it (as in Penrose-Hameroff's model or in Eccles's model). In this manuscript we propose a model and mechanism for mind's effect on the matter using an extended Bohmian... 

    A proposed mechanism for mind-brain interaction using extended Bohmian quantum mechanics in Avicenna's monotheistic perspective

    , Article Heliyon ; Volume 5, Issue 7 , 2019 ; 24058440 (ISSN) Jamali, M ; Golshani, M ; Jamali, Y ; Sharif University of Technology
    Elsevier Ltd  2019
    Abstract
    In quantum approaches to consciousness, the authors try to propose a model and mechanism for the mind-brain interaction using modern physics and some quantum concepts which do not exist in the classical physics. The independent effect of mind on the brain has been one of the challenging issues in the history of science and philosophy. In some recent mind-brain interaction models, the direct influence of mind on matter is either not accepted (as in Stapp's model) or not clear, and there have not been any clear mechanism for it (as in Penrose-Hameroff's model or in Eccles's model). In this manuscript we propose a model and mechanism for mind's effect on the matter using an extended Bohmian... 

    Brain-on-a-chip: Recent advances in design and techniques for microfluidic models of the brain in health and disease

    , Article Biomaterials ; Volume 285 , 2022 ; 01429612 (ISSN) Amirifar, L ; Shamloo, A ; Nasiri, R ; de Barros, N. R ; Wang, Z. Z ; Unluturk, B. D ; Libanori, A ; Ievglevskyi, O ; Diltemiz, S. E ; Sances, S ; Balasingham, I ; Seidlits, S. K ; Ashammakhi, N ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    Recent advances in biomaterials, microfabrication, microfluidics, and cell biology have led to the development of organ-on-a-chip devices that can reproduce key functions of various organs. Such platforms promise to provide novel insights into various physiological events, including mechanisms of disease, and evaluate the effects of external interventions, such as drug administration. The neuroscience field is expected to benefit greatly from these innovative tools. Conventional ex vivo studies of the nervous system have been limited by the inability of cell culture to adequately mimic in vivo physiology. While animal models can be used, their relevance to human physiology is uncertain and... 

    The role of the gut microbiota and nutrition on spatial learning and spatial memory: a mini review based on animal studies

    , Article Molecular Biology Reports ; Volume 49, Issue 2 , 2022 , Pages 1551-1563 ; 03014851 (ISSN) Alemohammad, S.M.A ; Noori, S. M. R ; Samarbafzadeh, E ; Noori, S. M. A ; Sharif University of Technology
    Springer Science and Business Media B.V  2022
    Abstract
    The gut-brain axis is believed to constitute a bidirectional communication mechanism that affects both mental and digestive processes. Recently, the role of the gut microbiota in cognitive performance has been the focus of much research. In this paper, we discuss the effects of gut microbiota and nutrition on spatial memory and learning. Studies have shown the influence of diet on cognitive capabilities such as spatial learning and memory. It has been reported that a high-fat diet can alter gut microbiota which subsequently leads to changes in spatial learning and memory. Some microorganisms in the gut that can significantly affect spatial learning and memory are Akkermansia muciniphila,...