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    Study of the Affecting Factors on the Stability of G-Quadruplex Structures

    , Ph.D. Dissertation Sharif University of Technology Fadaei, Elham (Author) ; Tafazzoli, Mohsen (Supervisor)
    Abstract
    We used spectroscopic techniques to study self-assembled structures based on nucleobases like G-quadruplexes and macrocycles. Also we used DOSY NMR technique to study hydrogen bonding network in alcohol solutions. First part of our results indicate thermodynamic stability and slow kinetic of G-quadruplexes in apolar aromatic solvents like toluene. Also our results show easy monitoring of formation of each K+ or Na+ complex by NMR, due to the low solubility of alkaline metal salts in apolar media and possibility to stop at any given time in order to control G-quadruplex yield. When combined with suitable functional units, these valuable attributes may be used for the noncovalent synthesis of... 

    Experimental and theoretical study of the spectroscopic properties and the preparation of 3-benzyl-2H-pyrano[3,2-c]chromene-2,5(6H)-dione

    , Article Journal of Molecular Structure ; Vol. 1065-1066, issue. 1 , May , 2014 , pp. 235-240 ; ISSN: 00222860 Moghaddam, F. M ; Foroushani, B. K ; Sharif University of Technology
    Abstract
    Compound 3-benzyl-2H-pyrano[3,2-c]chromene-2,5(6H)-dione(3), was prepared and fully characterized. The vibrational modes (FT-IR) and NMR data ( 1H and 13C chemical shifts) were compared with the results of Density Functional Theory (DFT) method at the B3LYP/cc-PVTZ level. The calculated vibrational frequencies and NMR chemical shifts are in good agreement with the experimental results. The electronic (UV-Vis) spectrum was calculated using the TD-DFT method in CH2Cl2 with the Polarizable Continuum Model using the integral equation formalism variant (IEFPCM) and was correlated to the experimental spectra. The assignment and analysis of the frontier HOMO and LUMO orbitals indicate that... 

    Cyclometalated heteronuclear Pt/Ag and Pt/Tl complexes: A structural and photophysical study

    , Article Dalton Transactions ; Vol. 43, issue. 3 , 2014 , pp. 1105-1116 ; ISSN: 14779226 Jamali, S ; Ghazfar, R ; Lalinde, E ; Jamshidi, Z ; Samouei, H ; Shahsavari, H. R ; Moreno, M. T ; Escudero-Adan, E ; Benet-Buchholz, J ; Milic, D ; Sharif University of Technology
    Abstract
    To investigate the factors influencing the luminescent properties of polymetallic cycloplatinated complexes a detailed study of the photophysical and structural properties of the heteronuclear complexes [Pt2Me 2(bhq)2(μ-dppy)2Ag2(μ-acetone) ](BF4)2, 2, [PtMe(bhq)(dppy)Tl]PF6, 3, and [Pt2Me2(bhq)2(dppy)2Tl]PF 6, 4, [bhq = benzo[h]quinoline, dppy = 2-(diphenylphosphino)pyridine] was conducted. Complexes 3 and 4 synthesized by the reaction of [PtMe(bhq)(dppy)], 1, with TlPF6 (1 or 1/2 equiv.) and stabilized by unsupported Pt-Tl bonds as revealed by multinuclear NMR spectroscopy and confirmed by X-ray crystallography for 3. DFT calculations for the previously reported butterfly Pt2Ag2 cluster 2... 

    Metabonomics exposes metabolic biomarkers of Crohn's disease by 1HNMR

    , Article Gastroenterology and Hepatology from Bed to Bench ; Volume 6, Issue SUPPL , 2013 , Pages S19-S22 ; 2008-4234 (EISSN) Fathi, F ; Ektefa, F ; Hagh-Azali, M ; Aghdaie, H. A ; Sharif University of Technology
    2013
    Abstract
    Metabonomics and other "omic" fields are essential science in analytical chemistry. Modern analytical instruments such as proton nuclear magnetic resonance (1H-NMR) can provide the great quantity of analytical information. In order to assign unknown samples, chemometric methods recognition build classification model based on experimental data. Firstly, some current strategies regarding disease diagnosis are exhibited in metabonomic studies. Some diseases such as crohn's disease can be difficult to diagnose since its signs and symptoms may be similar to other medical problems or often mimic other symptoms. Applications of NMR and supervised pattern recognition in the field of metabonomics are... 

    Metabonomics based NMR in Crohn's disease applying PLS-DA

    , Article Gastroenterology and Hepatology from Bed to Bench ; Volume 6, Issue SUPPL , 2013 , Pages S82-S86 ; 20082258 (ISSN) Fathi, F ; Oskouie, A. A ; Tafazzoli, M ; Naderi, N ; Sohrabzedeh, K ; Fathi, S ; Norouzinia, M ; Nejad, M. R ; Sharif University of Technology
    2013
    Abstract
    Aim: The aim of this study was to search for metabolic biomarkers of Crohn's disease (CD). Background: Crohn's disease (CD) is a type of inflammatory bowel disease that causes a wide variety of symptoms. CD can influence any part of the gastrointestinal tract from mouth to anus. CD is not easily diagnosed because monitoring tools are currently insufficient. Thus, the discovery of proper methods is needed for early diagnosis of CD. Patients and methods: We utilized metabolic profiling using proton nuclear magnetic resonance spectroscopy (1HNMR) to find the metabolites in serum. Classification of CD and healthy subject was done using partial least squares discriminant analysis (PLS-DA).... 

    Synthesis and characterization of salep sulfate and its utilization in preparation of heavy metal ion adsorbent

    , Article Journal of Applied Polymer Science ; Volume 130, Issue 4 , 2013 , Pages 3001-3008 ; 00218995 (ISSN) Pourjavadi, A ; Doulabi, M ; Alamolhoda, A. A ; Tavakkoli, E ; Amirshekari, S ; Sharif University of Technology
    2013
    Abstract
    A multicomponent polysaccharide obtained from dried tubers of certain natural terrestrial orchids was chemically modified by sulfonation using chlorosulfonic acid-dimethylformamide (HClSO3-DMF) complex as a reagent. For a structural characterization of salep sulfate 1H nuclear magnetic resonance (NMR), Fourier transform infrared (FTIR) spectra, and Thermogravimetric analysis (TGA) curves were recorded. The sulfate content of modified salep was determined using elemental analysis. This modified biopolymer was used to prepare a new environment-friendly heavy metal ion adsorbent, salep sulfate-graft-polyacrylic acid hydrogel (SS-g-PAA). Swelling rate and equilibrium water absorbency in various... 

    Thermo- and pH-sensitive dendrosomes as bi-phase drug delivery systems

    , Article Nanomedicine: Nanotechnology, Biology, and Medicine ; Volume 9, Issue 8 , 2013 , Pages 1203-1213 ; 15499634 (ISSN) Adeli, M ; Fard, A. K ; Abedi, F ; Chegeni, B. K ; Bani, F ; Sharif University of Technology
    2013
    Abstract
    Fully supramolecular dendrosomes (FSD) as bi-phase drug delivery systems are reported in this work. For preparation of FSD, amphiphilic linear-dendritic supramolecular systems (ALDSS) have been synthesized by host-guest interactions between hyperbranched polyglycerol having β-cyclodextrin core and bi-chain polycaprolactone (BPCL) with a fluorescine focal point. Self-assembly of ALDSS in aqueous solutions led to FSD. They were able to encapsulate paclitaxel with a high loading capacity. The dendrosome-based drug delivery systems were highly sensitive to pH and temperature. They were stable at 20-37. °C and pH7-8, but dissociated and released drug at temperatures lower than 20. °C or higher... 

    Novel cationic-modified salep as an efficient flocculating agent for settling of cement slurries

    , Article Carbohydrate Polymers ; Volume 93, Issue 2 , April , 2013 , Pages 506-511 ; 01448617 (ISSN) Pourjavadi, A ; Fakoorpoor, S. M ; Hosseini, S. H ; Sharif University of Technology
    2013
    Abstract
    A new cationic flocculant was synthesized by graft copolymerization of acrylamide (AM) and 3-(methacryloylamino)propyl]trimethylammonium chloride (MAPTAC) onto salep using free radical polymerization initiated by ammonium persulfate (APS) to produce cationic salep [S-g-P(AM-co-MAPTAC)]. Reaction parameters (monomers/salep ratio, concentration of reactants, MAPTAC/AM ratio, and APS) were optimized using a full factorial experimental design to obtain the highest settling rate for cement suspensions. The best performing product was characterized by gel permeation chromatography (GPC), FTIR, 1H NMR spectroscopy, and thermogravimetric analysis (TGA). The resulted cationic flocculant may be... 

    Layer selection effect on solid state 13C and 15N chemical shifts calculation using ONIOM approach

    , Article Solid State Nuclear Magnetic Resonance ; Volume 51-52 , 2013 , Pages 31-36 ; 09262040 (ISSN) Shaghaghi, H ; Ebrahimi, H. P ; Bahrami Panah, N ; Tafazzoli, M ; Sharif University of Technology
    2013
    Abstract
    Solid state 13C and 15N chemical shifts of uracil and imidazole have been calculated using a 2-layer ONIOM approach at 32 levels of theory. The effect of electron correlation between two layers has been investigated by choosing two different kinds of layer selection. Factorial design has been applied as a multivariate technique to analyze the effect of wave function and layer selection on solid state 13C and 15N chemical shifts calculations. PBEPBE/6-311+G(d,p) was recommended as an optimally selected level of theory for high layer in both models. It is illustrated that considering the electron correlation of two layers of ONIOM models is important factor to calculate solid state 15N... 

    Thermodynamic study on the effect of O 2N 2-azacrown macrocyclic ring-size in complexation with [60]fullerene

    , Article Fullerenes Nanotubes and Carbon Nanostructures ; Volume 21, Issue 5 , Oct , 2013 , Pages 394-402 ; 1536383X (ISSN) Ghanbari, B ; Aratboni, A. M ; Sharif University of Technology
    2013
    Abstract
    The interaction of [60]fullerene with a series of 15-19-membered macrocycles containing an O 2N 2-donor set has been investigated by UV-visible spectroscopy. The formation constants arising from the complexation of [60]fullerene with these azacrown macrocycles, having various ring size, were determined in CHCl 3 media applying Benesi-Hildebrand equation. The stoichiometry has been found by the Job method in each case. The thermodynamic parameters, for example, formation enthalpies (δH o) and entropies (δS o), for these complexation were also determined. Experimentally, it was found that macroring size of the azacrown has a prominent effect on azacrown complexation with [60]fullerene in terms... 

    Synthesis and characterization of a novel (salep phosphate)-based hydrogel as a carrier matrix for fertilizer release

    , Article Reactive and Functional Polymers ; Volume 72, Issue 10 , 2012 , Pages 667-672 ; 13815148 (ISSN) Pourjavadi, A ; Doulabi, M ; Soleyman, R ; Sharif, S ; Eghtesadi, S. A ; Sharif University of Technology
    Elsevier  2012
    Abstract
    Salep phosphate modified biopolymers with different phosphate contents were prepared via reacting salep (a multi-component polysaccharide obtained from dried tubers of certain natural terrestrial orchids) with a solution of primary and secondary sodium phosphates under basic conditions in a semidry process. Structural characterization of salep phosphates were carried out by 31P NMR, FT-IR spectra and TGA curves. Determination of the phosphate content in samples was done by a standard spectrophotometric method. Then, novel (salep phosphate)-based hydrogels were synthesized by graft copolymerization of acrylic acid (AA) monomer onto salep phosphate backbones. Effect of the phosphate contents... 

    27Al and 31P NMR investigations of soluble aluminophosphate species in alcohol-water mixtures

    , Article Journal of Solution Chemistry ; Volume 41, Issue 5 , 2012 , Pages 888-897 ; 00959782 (ISSN) Samadi Maybodi, A ; Nejad Darzi, S. K. H ; Tafazzoli, M ; Sharif University of Technology
    2012
    Abstract
    In this work, phosphorus-31 and aluminum-27 nuclear magnetic resonance techniques were used to characterize the distribution of soluble aluminophosphate species in methanol + water and ethanol + water mixtures. The assignment of the peaks to alu-minate species was attempted, clarifying earlier work and producing information on the different aluminophosphate complexes. Nine peaks were observed at -0.41, -6.4, -7.5, -7.9, -13.1, -13.9, -16.6, -18.1 and -20.6 ppm. Four new peaks appeared in the 31P NMR spectra of the alcoholic aluminophosphate solutions and their intensities changed with changes of the alcohol:water volume ratio. These new peaks were observed in the presence of methanol or... 

    The effects of SiO 2 and K 2O on glass forming ability and structure of CaOTiO 2P 2O 5 glass system

    , Article Ceramics International ; Volume 38, Issue 4 , 2012 , Pages 3281-3290 ; 02728842 (ISSN) Ahmadi Mooghari, H. R ; Nemati, A ; Eftekhari Yekta, B ; Hamnabard, Z ; Sharif University of Technology
    2012
    Abstract
    The effects of SiO 2 and K 2O were investigated on the glass forming ability (GFA) and structural characteristics of CaOTiO 2P 2O 5 system. Differential thermal analyzer (DTA), X-ray diffraction (XRD), scanning electron microscopy (SEM), FT-IR and 31P magic angle spinning NMR methods were applied for characterizations of the system. Unwanted crystallization in the initial three components base glass composition was observed by adding SiO 2 and crystalline phases such as TiP 2O 7, rutile (TiO 2) and cristobalite (SiO 2) were formed in it. The results showed that K 2O prevents crystallization of glasses and promotes the formation of glass. FT-IR and X-ray diffraction showed that the addition... 

    Solvent-free oxidation of cumene by molecular oxygen catalyzed by cobalt salen-type complexes

    , Article Research on Chemical Intermediates ; Volume 38, Issue 3-5 , 2012 , Pages 871-883 ; 09226168 (ISSN) Ghanbari, B ; Ferdosi, S. R ; Tafazolian, H ; Sharif University of Technology
    Abstract
    Co(salen)-type [where salen = di-(salicylal)-ethylenediimine] complexes were shown to be efficient catalysts in the oxidation of 2-phenylpropane (cumene) by dioxygen primarily to 2-phenyl-2-propanol (cumyl alcohol), 2-phe-nylpropene (a-methylstyrene), and 1-phenylethanone (acetophenone) applying 1H NMR spectroscopy and gas chromatography-mass spectrometry (GC-MS). The effect of substitution on the ligand was also monitored in both oxygen-absorption and the catalytic reaction. Based on these results, the trend observed for the production of a-methylstyrene and cumyl alcohol were parallel to dioxygen uptake by the catalyst in neat cumene, while acetophenone productions obeyed a non-linear... 

    Gauge invariant atomic orbital-density functional theory prediction of accurate gas phase 1H and 13C NMR chemical shifts

    , Article Concepts in Magnetic Resonance Part A: Bridging Education and Research ; Volume 38 A, Issue 6 , 2011 , Pages 269-279 ; 15466086 (ISSN) Ebrahimi, H. P ; Shaghaghi, H ; Tafazzoli, M ; Sharif University of Technology
    Abstract
    Hartree-Fock and density functional theory methods at gauge invariant atomic orbital approach with different simplest basis sets were employed for the computation of chemical shifts. The wave functions for calculating gas-phase 1H and 13C chemical shifts have been optimally selected using empirical models. The effects of electron correlation treatment, triple-ξ valance shell, diffuse function, and polarization function on calculated chemical shifts have been discussed. Through empirical scaling of shielding, accurate predictions of 1H chemical shifts are achieved for the molecules studied, when considering small Pople basis sets. Gas phase experimental 1H chemical shifts in alcohols, amines... 

    Investigation of structure, vibrational and NMR spectra of oxycodone and naltrexone: A combined experimental and theoretical study

    , Article Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy ; Volume 79, Issue 3 , 2011 , Pages 574-582 ; 13861425 (ISSN) Tavakol, H ; Esfandyari, M ; Taheri, S ; Heydari, A ; Sharif University of Technology
    Abstract
    In this work, two important opioid antagonists, naltrexone and oxycodone, were prepared from thebaine and were characterized by IR, 1H NMR and 13C NMR spectroscopy. Moreover, computational NMR and IR parameters were obtained using density functional theory (DFT) at B3LYP/6-311++G* * level of theory. Complete NMR and vibrational assignment were carried out using the observed and calculated spectra. The IR frequencies and NMR chemical shifts, determined experimentally, were compared with those obtained theoretically from DFT calculations, showed good agreements. The RMS errors observed between experimental and calculated data for the IR absorptions are 85 and 105 cm-1, for the 1H NMR peaks are... 

    Magnetic resonance tensors in uracil: calculation of 13C, 15N, 17O NMR chemical shifts, 17O and 14N electric field gradients and measurement of 13C and 15N chemical shifts

    , Article Solid State Nuclear Magnetic Resonance ; Volume 37, Issue 1-2 , 2010 , Pages 13-20 ; 09262040 (ISSN) Amini, S. K ; Shaghaghi, H ; Bain, A. D ; Chabok, A ; Tafazzoli, M ; Sharif University of Technology
    2010
    Abstract
    The experimental 13C NMR chemical shift components of uracil in the solid state are reported for the first time (to our knowledge), as well as newer data for the 15N nuclei. These experimental values are supported by extensive calculated data of the 13C, 15N and 17O chemical shielding and 17O and 14N electric field gradient (EFG) tensors. In the crystal, uracil forms a number of strong and weak hydrogen bonds, and the effect of these on the 13C and 15N chemical shift tensors is studied. This powerful combination of the structural methods and theoretical calculations gives a very detailed view of the strong and weak hydrogen bond formation by this molecule. Good calculated results for the... 

    Study of self-diffusion in two binary solutions, glycerol-water and methanol-water using diffusion-ordered spectroscopy

    , Article Scientia Iranica ; Volume 23, Issue 3 , 2016 , Pages 1175-1183 ; 10263098 (ISSN) Fadaei, E ; Tafazzoli, M ; Sharif University of Technology
    Sharif University of Technology 
    Abstract
    The concentration and temperature behaviors of the self-diffusion coefficient were analyzed in glycerol-water and methanol-water solutions using Diffusion-Ordered Spectroscopy (DOSY) experiment. Our results indicate that the self-diffusion coefficient dips with increasing concentration and decreasing temperature. The concentration behavior shows that there is hydrogen bond interaction between water and alcohol, which declines the self-diffusion coefficients of both in the aqueous binary mixtures. The self-diffusion activation energies were estimated 13.6, 29.4, and 32.8 (kJ/mol) for methanol and 24.8, 25.5, and 27.6 (kJ/mol) for water in the methanol-water solutions with 0.03, 0.10, and 0.20... 

    A cooperative pathway for water activation using a bimetallic Pt0-CuI system

    , Article Dalton Transactions ; Volume 45, Issue 44 , 2016 , Pages 17644-17651 ; 14779226 (ISSN) Jamali, S ; Abedanzadeh, S ; Khaledi, N. K ; Samouei, H ; Hendi, Z ; Zacchini, S ; Kia, R ; Shahsavari, H. R ; Sharif University of Technology
    Royal Society of Chemistry  2016
    Abstract
    A mixture of the platinum(0) complex [Pt(PtBu3)2] and tetrakis(acetonitrile)copper(i) hexafluorophosphate in acetone activated a water molecule and gave the hydride platinum(ii) complex [PtH(CH3CN)(PtBu3)2]PF6, 1, and the hydroxide Cu(i) species. The crystal structure of complex 1 was determined by X-ray crystallography, indicating a distorted square planar geometry around the platinum center. Although three possible mechanisms are proposed for this transformation, monitoring of the reaction using NMR spectroscopy at low temperature reveals that a cooperative pathway involving formation of a Pt0-CuI dative bond complex is the most probable pathway. The hydride platinum complex 1 is stable in... 

    Synthesis of a new T-shaped heterobinuclear Pt0-AuI complex [(t-Bu3P)2PtAu(PPh3)]BF4 from trinuclear gold cluster complex [(PPh3)Au]3(μ-O)BF4

    , Article Scientia Iranica ; Volume 23, Issue 3 , 2016 , Pages 1089-1094 ; 10263098 (ISSN) Jamalia, S ; Ashtiania, M. M ; Milic, D ; Sharif University of Technology
    Sharif University of Technology  2016
    Abstract
    The heterobinuclear platinum(0)-gold(I) complex [(t-Bu3P)2PtAu(PPh3)] BF4, 5, was synthesized by the reaction of trinuclear cluster complex f[(PPh3)Au]3(μ-O)gBF4, 4, with one equiv of [(t-Bu3P)2Pt] at room temperature. The heterobinuclear complex 5 was characterized using multinuclear NMR spectroscopy and elemental microanalysis and was further identified by single crystal X-ray structure determination. Crystal structure of 5 shows a T-shaped geometry with an unsupported short distance Pt-Au dative bond