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    Synthesizing and staining manganese oxide nanoparticles for cytotoxicity and cellular uptake investigation

    , Article Biochimica et Biophysica Acta - General Subjects ; Vol. 1840, Issue. 1 , 2014 , pp. 428-433 ; ISSN: 03044165 Omid, H ; Oghabian, M. A ; Ahmadi, R ; Shahbazi, N ; Hosseini, H. R. M ; Shanehsazzadeh, S ; Zangeneh, R. N ; Sharif University of Technology
    Abstract
    Background For decades, contrast agents have been used to reduce longitudinal (T1) or transverse (T2) relaxation times. High toxicity of gadolinium-based contrast agents leads researchers to new T1 contrast agents. Manganese oxide (MnO) nanoparticle (NP) with the lower peril and good enough signal change ability has been offered as a new possibility for magnetic resonance imaging (MRI). Methods The synthesized NPs were investigated for physicochemical and biological properties by X-ray diffraction, Fourier transform infrared spectroscopy, transmission electron microscope, dynamic light scattering (DLS), inductively coupled plasma, enzyme-linked immunosorbent assay, and 3 T magnetic resonance... 

    MRI-PET image fusion based on NSCT transform using local energy and local variance fusion rules

    , Article Journal of Medical Engineering and Technology ; Vol. 38, issue. 4 , 2014 , p. 211-219 Amini, N ; Fatemizadeh, E ; Behnam, H ; Sharif University of Technology
    Abstract
    Image fusion means to integrate information from one image to another image. Medical images according to the nature of the images are divided into structural (such as CT and MRI) and functional (such as SPECT, PET). This article fused MRI and PET images and the purpose is adding structural information from MRI to functional information of PET images. The images decomposed with Nonsubsampled Contourlet Transform and then two images were fused with applying fusion rules. The coefficients of the low frequency band are combined by a maximal energy rule and coefficients of the high frequency bands are combined by a maximal variance rule. Finally, visual and quantitative criteria were used to... 

    A framework for content-based human brain magnetic resonance images retrieval using saliency map

    , Article Biomedical Engineering - Applications, Basis and Communications ; Volume 25, Issue 4 , 2013 ; 10162372 (ISSN) Tarjoman, M ; Fatemizadeh, E ; Badie, K ; Sharif University of Technology
    2013
    Abstract
    Content-based image retrieval (CBIR) makes use of low-level image features, such as color, texture and shape, to index images with minimal human interaction. Considering the gap between low-level image features and the high-level semantic concepts in the CBIR, we proposed an image retrieval system for brain magnetic resonance images based on saliency map. The saliency map of an image contains important image regions which are visually more conspicuous by virtue of their contrast with respect to surrounding regions. First, the proposed approach exploits the ant colony optimization (ACO) technique to measure the image's saliency through ants' movements on the image. The textural features are... 

    Modified Gadonanotubes as a promising novel MRI contrasting agent

    , Article DARU, Journal of Pharmaceutical Sciences ; Volume 21, Issue 1 , 2013 ; 15608115 (ISSN) Jahanbakhsh, R ; Atyabi, F ; Shanehsazzadeh, S ; Sobhani, Z ; Adeli, M ; Dinarvand, R ; Sharif University of Technology
    2013
    Abstract
    Background and purpose of the study. Carbon nanotubes (CNTs) are emerging drug and imaging carrier systems which show significant versatility. One of the extraordinary characteristics of CNTs as Magnetic Resonance Imaging (MRI) contrasting agent is the extremely large proton relaxivities when loaded with gadolinium ion (Gdn 3+) clusters. Methods. In this study equated Gdn 3+ clusters were loaded in the sidewall defects of oxidized multiwalled (MW) CNTs. The amount of loaded gadolinium ion into the MWCNTs was quantified by inductively coupled plasma (ICP) method. To improve water solubility and biocompatibility of the system, the complexes were functionalized using diamine-terminated... 

    2D computational fluid dynamic modeling of human ventricle system based on fluid-solid interaction and pulsatile flow

    , Article Basic and Clinical Neuroscience ; Volume 4, Issue 1 , 2013 , Pages 64-75 ; 2008126X (ISSN) Masoumi, N ; Framanzad, F ; Zamanian, B ; Seddighi, A. S ; Moosavi, M. H ; Najarian, S ; Bastani, D ; Sharif University of Technology
    2013
    Abstract
    Many diseases are related to cerebrospinal fluid (CSF) hydrodynamics. Therefore, understanding the hydrodynamics of CSF flow and intracranial pressure is helpful for obtaining deeper knowledge of pathological processes and providing better treatments. Furthermore, engineering a reliable computational method is promising approach for fabricating in vitro models which is essential for inventing generic medicines. A Fluid-Solid Interaction (FSI)model was constructed to simulate CSF flow. An important problem in modeling the CSF flow is the diastolic back flow. In this article, using both rigid and flexible conditions for ventricular system allowed us to evaluate the effect of surrounding brain... 

    Synthesis of pseudopolyrotaxanes-coated superparamagnetic Iron oxide nanoparticles as new MRI contrast agent

    , Article Colloids and Surfaces B: Biointerfaces ; Volume 103 , March , 2013 , Pages 652-657 ; 09277765 (ISSN) Hosseini, F ; Panahifar, A ; Adeli, M ; Amiri, H ; Lascialfari, A ; Orsini, F ; Doschak, M. R ; Mahmoudi, M ; Sharif University of Technology
    2013
    Abstract
    Superparamagnetic Iron Oxide Nanoparticles (SPIONs) were synthesized and coated with pseudopolyrotaxanes (PPRs) and proposed as a novel hybrid nanostructure for medical imaging and drug delivery. PPRs were prepared by addition of α-cyclodextrin rings to functionalized polyethylene glycol (PEG) chain with hydrophobic triazine end-groups. Non-covalent interactions between SPIONs and PPRs led to the assembly of SPIONs@PRs hybrid nanomaterials. Measurements of the 1H Nuclear Magnetic Resonance (NMR) relaxation times T1 and T2 allowed us to determine the NMR dispersion profiles. Comparison between our SPIONs@PRs hybrid nano-compound and the commercial SPION compound, Endorem®, showed a higher... 

    Automatic segmentation of brain MRI in high-dimensional local and non-local feature space based on sparse representation

    , Article Magnetic Resonance Imaging ; Volume 31, Issue 5 , 2013 , Pages 733-741 ; 0730725X (ISSN) Khalilzadeh, M. M ; Fatemizadeh, E ; Behnam, H ; Sharif University of Technology
    2013
    Abstract
    Automatic extraction of the varying regions of magnetic resonance images is required as a prior step in a diagnostic intelligent system. The sparsest representation and high-dimensional feature are provided based on learned dictionary. The classification is done by employing the technique that computes the reconstruction error locally and non-locally of each pixel. The acquired results from the real and simulated images are superior to the best MRI segmentation method with regard to the stability advantages. In addition, it is segmented exactly through a formula taken from the distance and sparse factors. Also, it is done automatically taking sparse factor in unsupervised clustering methods... 

    Evaluating the effect of ultrasmall superparamagnetic iron oxide nanoparticles for a long-term magnetic cell labeling

    , Article Journal of Medical Physics ; Volume 38, Issue 1 , 2013 , Pages 34-40 ; 09716203 (ISSN) Shanehsazzadeh, S ; Oghabian, M. A ; Allen, B. J ; Amanlou, M ; Masoudi, A ; Daha, F. J ; Sharif University of Technology
    2013
    Abstract
    In order to evaluate the long-term viability, the iron content stability, and the labeling efficiency of mammalian cells using magnetic cell labeling; dextran-coated ultrasmall superparamagnetic iron oxide (USPIOs) nanoparticles with plain surfaces having a hydrodynamic size of 25 nm were used for this study. Tests were carried out in four groups each containing 5 flasks of 5.5 × 10 6 AD-293 embryonic kidney cells. The cell lines were incubated for 24 h using four different iron concentrations with and without protamine sulfate (Pro), washed with phosphate-buffered saline (PBS) and centrifuged three times to remove the unbounded USPIOs. Cell viability was also verified using USPIOs. There... 

    An implementation of a CBIR system based on SVM learning scheme

    , Article Journal of Medical Engineering and Technology ; Volume 37, Issue 1 , 2013 , Pages 43-47 ; 03091902 (ISSN) Tarjoman, M ; Fatemizadeh, E ; Badie, K ; Sharif University of Technology
    2013
    Abstract
    Content-based image retrieval (CBIR) has been one of the most active areas of research. The retrieval principle of CBIR systems is based on visual features such as colour, texture and shape or the semantic meaning of the images. A CBIR system can be used to locate medical images in large databases. This paper presents a CBIR system for retrieving digital human brain magnetic resonance images (MRI) based on textural features and the support vector machine (SVM) learning method. This system can retrieve similar images from the database in two groups: normal and tumoural. This research uses the knowledge of the CBIR approach to the application of medical decision support and discrimination... 

    Long-term investigation on the phase stability, magnetic behavior, toxicity, and MRI characteristics of superparamagnetic Fe/Fe-oxide core/shell nanoparticles

    , Article International Journal of Pharmaceutics ; Volume 439, Issue 1-2 , 2012 , Pages 28-40 ; 03785173 (ISSN) Masoudi, A ; Madaah Hosseini, H. R ; Seyed Reyhani, S. M ; Shokrgozar, M. A ; Oghabian, M. A ; Ahmadi, R ; Sharif University of Technology
    2012
    Abstract
    To efficiently enhance the contrast obtaining from magnetic resonance imaging (MRI), pharmaceutical grade colloidal dispersions of PEG coated iron-based nanoparticles were prepared and compared to conventional pure iron oxide contrast agent. In this study, we synthesized ∼14 nm iron nanoparticles via NaBH4 reduction of iron(III) chloride in an aqueous medium. The resulting nanoparticles were further oxidized by two different methods via (CH3)3NO oxygen transferring agent and exposure to oxygen flow. XRD and electron microscopy analyses confirmed the formation of a second layer on the surface of α-Fe core. As magnetic measurements and Mössbauer spectra of 4-months post prepared nanoparticles... 

    Adaptive sparse representation for MRI noise removal

    , Article Biomedical Engineering - Applications, Basis and Communications ; Volume 24, Issue 5 , October , 2012 , Pages 383-394 ; 10162372 (ISSN) Khalilzadeh, M. M ; Fatemizadeh, E ; Behnam, H ; Sharif University of Technology
    World Scientific  2012
    Abstract
    Sparse representation is a powerful tool for image processing, including noise removal. It is an effective method for Gaussian noise removal by taking advantage of a fixed and learned dictionary. In this study, the variable distribution of Rician noise is reduced in magnetic resonance (MR) images by sparse representation based on reconstruction error sets. Standard deviation of Gaussian noise is used to find these errors locally. The proposed method represents two formulas for local error calculation using standard deviation of noise. The acquired results from the real and simulated images are comparable, and in some cases, better than the best Rician noise removal method due to the... 

    A detailed and validated three dimensional dynamic model of the patellofemoral joint

    , Article Journal of Biomechanical Engineering ; Volume 134, Issue 4 , 2012 ; 01480731 (ISSN) Akbar, M ; Farahmand, F ; Jafari, A ; Foumani, M. S ; Sharif University of Technology
    2012
    Abstract
    A detailed 3D anatomical model of the patellofemoral joint was developed to study the tracking, force, contact and stability characteristics of the joint. The quadriceps was considered to include six components represented by 15 force vectors. The patellar tendon was modeled using four bundles of viscoelastic tensile elements. Each of the lateral and medial retinaculum was modeled by a three-bundle nonlinear spring. The femur and patella were considered as rigid bodies with their articular cartilage layers represented by an isotropic viscoelastic material. The geometrical and tracking data needed for model simulation, as well as validation of its results, were obtained from an in vivo... 

    An interactive cbir system based on anfis learning scheme for human brain magnetic resonance images retrieval

    , Article Biomedical Engineering - Applications, Basis and Communications ; Volume 24, Issue 1 , 2012 , Pages 27-36 ; 10162372 (ISSN) Tarjoman, M ; Fatemizadeh, E ; Badie, K ; Sharif University of Technology
    2012
    Abstract
    Content-based image retrieval (CBIR) has turned into an important and active potential research field with the advance of multimedia and imaging technology. It makes use of image features, such as color, texture and shape, to index images with minimal human intervention. A CBIR system can be used to locate medical images in large databases. In this paper we propose a CBIR system which describes the methodology for retrieving digital human brain magnetic resonance images (MRI) based on textural features and the Adaptive neuro-fuzzy inference system (ANFIS) learning to retrieve similar images from database in two categories: normal and tumoral. A fuzzy classifier has been used, because of the... 

    Magnetic resonance imaging tracking of stem cells in vivo using iron oxide nanoparticles as a tool for the advancement of clinical regenerative medicine

    , Article Chemical Reviews ; Volume 111, Issue 2 , November , 2011 , Pages 253-280 ; 00092665 (ISSN) Mahmoudi, M ; Hosseinkhani, H ; Hosseinkhani, M ; Boutry, S ; Simchi, A ; Shane Journeay, W ; Subramani, K ; Laurent, S ; Sharif University of Technology
    2011
    Abstract
    Fetal stem cells, which can be isolated from the organs of fetuses, differentiate along multiple lineages. Their advantages over their adult counterparts include better intrinsic homing and engraftment and lower immunogenicity, and they are less ethically contentious. It is noteworthy that Mesenchymal Stem Cells (MSC) can be activated and mobilized at the site of damaged tissue. Since vascular delivery suffers from a pulmonary first pass effect, direct or systemic injection of MSCs into the damaged tissue is preferred, particularly in the case of versatile tissue ischemia. Ultrasound applies acoustic energy with a frequency above human hearing (20 kHz). Ultrasound imaging or sonography... 

    Low back pain in Iran: A growing need to adapt and implement evidence-based practice in developing countries

    , Article Spine ; Volume 36, Issue 10 , 2011 , Pages E638-E646 ; 03622436 (ISSN) Mousavi, S. J ; Akbari, M. E ; Mehdian, H ; Mobini, B ; Montazeri, A ; Akbarnia, B ; Parnianpour, M ; Sharif University of Technology
    2011
    Abstract
    Study Design.: A descriptive overview of the literature. Objective.: To present a comprehensive descriptive overview of the published papers about epidemiologic features, burden, and current management of low back pain (LBP) in Iran. Summary OF Background Data.: Little is known about the epidemiology, burden, and management of LBP in developing and low- to middle-income countries, such as Iran. Methods.: A literature search was carried out using MEDLINE database to assess existing literature about prevalence, disease burden, impact, and current management of nonspecific LBP in Iran. Results.: Twenty-six articles matched inclusion criteria and included in the study. The findings related to... 

    In situ forming interpenetrating hydrogels of hyaluronic acid hybridized with iron oxide nanoparticles

    , Article Biomaterials Science ; Volume 3, Issue 11 , Aug , 2015 , Pages 1466-1474 ; 20474830 (ISSN) Kheirabadi, M ; Shi, L ; Bagheri, R ; Kabiri, K ; Hilborn, J ; Ossipov, D. A ; Sharif University of Technology
    Royal Society of Chemistry  2015
    Abstract
    Four derivatives of hyaluronic acid (HA) bearing thiol (HA-SH), hydrazide (HA-hy), 2-dithiopyridyl (HA-SSPy), and aldehyde groups (HA-al) respectively were synthesized. Thiol and 2-dithiopyridyl as well as hydrazide and aldehyde make up two chemically orthogonal pairs of chemo-selective functionalities that allow in situ formation of interpenetrating (IPN) disulfide and hydrazone networks simultaneously upon the mixing of the above derivatives at once. The formation of IPN was demonstrated by comparing it with the formulations of the same total HA concentration but lacking one of the reactive components. The hydrogel composed of all four components was characterized by a larger elastic... 

    Mathematical modeling of CSF pulsatile hydrodynamics based on fluid-solid interaction

    , Article IEEE Transactions on Biomedical Engineering ; Volume 57, Issue 6 , 2010 , Pages 1255-1263 ; 00189294 (ISSN) Masoumi, N ; Bastani, D ; Najarian, S ; Ganji, F ; Farmanzad, F ; Seddighi, A. S ; Sharif University of Technology
    2010
    Abstract
    Intracranial pressure (ICP) is derived from cerebral blood pressure and cerebrospinal fluid (CSF) circulatory dynamics and can be affected in the course of many diseases. Computer analysis of the ICP time pattern plays a crucial role in the diagnosis and treatment of those diseases. This study proposes the application of Linninger et al.s [IEEE Trans. Biomed. Eng. , vol. 52, no. 4, pp. 557565, Apr. 2005] fluidsolid interaction model of CSF hydrodynamic in ventricular system based on our clinical data from a group of patients with brain parenchyma tumor. The clinical experiments include the arterial blood pressure (ABP), venous blood pressure, and ICP in the subarachnoid space (SAS). These... 

    Synthesis and cytotoxicity assessment of superparamagnetic iron-gold core-shell nanoparticles coated with polyglycerol

    , Article Journal of Colloid and Interface Science ; Volume 345, Issue 1 , 2010 , Pages 64-71 ; 00219797 (ISSN) Jafari, T ; Simchi, A ; Khakpash, N ; Sharif University of Technology
    Abstract
    Core-shell iron-gold (Fe@Au) nanoparticles were synthesized by a facile reverse micelle procedure and the effect of water to surfactant molar ratio (w) on the size, size distribution and magnetic properties of the nanoparticles was studied. MTT assay was utilized to evaluate the cell toxicity of the nanoparticles. To functionalize the particles for MRI imaging and targeted drug delivery, the particles were coated by polyglycerol through capping with thiol followed by polymerization of glycidol. The characteristics of the particles were examined by X-ray diffraction (XRD), transmission electron microscopy (TEM), vibrating sample magnetometere (VSM), UV-visible spectroscopy, and Fourier... 

    Comparison of kinematics of ACL-deficient and healthy knees during passive flexion and isometric leg press

    , Article Knee ; Volume 20, Issue 6 , December , 2013 , Pages 505-510 ; 09680160 (ISSN) Esfandiarpour, F ; Shakourirad, A ; Talebian Moghaddam, S ; Olyaei, G ; Eslami, A ; Farahmand, F ; Sharif University of Technology
    Abstract
    Background: Studying the kinematics of the ACL deficient (ACLD) knees, during different physiological activities and muscle contraction patterns, can improve our understanding of the joint's altered biomechanics due to ACL deficiency as well as the efficacy and safety of the rehabilitations exercises. Methods: Twenty-five male volunteers, including 11 normal and 14 unilateral ACLD subjects, participated in this study. The kinematics of the injured knees of the ACLD subjects was compared with their intact knees and the healthy group during passive flexion and isometric leg press with the knees flexed from full extension to 45° flexion, with 15° intervals. An accurate registration algorithm... 

    Joint edge detection and motion estimation of cardiac MR image sequence by a phase field method

    , Article Computers in Biology and Medicine ; Volume 40, Issue 1 , 2010 , Pages 21-28 ; 00104825 (ISSN) Eslami, A ; Jahed, M ; Preusser, T ; Sharif University of Technology
    Abstract
    In this paper a variational framework for joint segmentation and motion estimation is employed for inspecting heart in Cine MRI sequences. A functional including Mumford-Shah segmentation and optical flow based dense motion estimation is approximated using the phase-field technique. The minimizer of the functional provides an optimum motion field and edge set by considering both spatial and temporal discontinuities. Exploiting calculus of variation principles, multiple partial differential equations associated with the Euler-Lagrange equations of the functional are extracted, first. Next, the finite element method is used to discretize the resulting PDEs for numerical solution. Several...