Sharif Digital Repository

We substitute different types of photonic crystal waveguide components by approximate transmission line circuits. The proposed distributed circuits exploit the analogy of wave propagation in photonic crystal waveguides and transmission lines. They are either cascaded to each other or inserted like stubs to imitate wave propagation within the photonic structure. Notable examples, e.g. coupled waveguide-cavity systems, sharp 90° bends, and T-junctions, are studied in detail. It is shown that analysis of the proposed circuits here can yield accurate enough results and thus substitute the brute-force numerical methods. The privilege of having analytical models is exploited to improve the... 

An efficient frequency-domain method, the phase variation monitoring (PVM) method, is proposed to determine the electromagnetic eigenmodes in two-dimensional photonic crystal waveguides. The proposed method is based on monitoring the reflection and transmission coefficients of incident plane waves. It is successfully applied to an illustrative line-defect photonic crystal waveguide and proved to be capable of calculating the in-plane leakage through the finite-size photonic crystal surrounding the line-defect. Calculation of the leakage loss is not only important for proper understanding of wave propagation within the defect but also for its significant role in applications of photonic... 

An approximate circuit model is proposed for mode extraction in two-dimensional photonic crystal waveguides. The dispersion equation governing the complex propagation constant of the photonic crystal waveguide is then related to the resonance condition in the proposed circuit model. In this fashion, a scalar complex transcendental equation is given for mode extraction. To avoid searching for the complex roots of the derived scalar dispersion equation, however, the real and imaginary parts of the sought-after propagation constant are extracted by using the physical resonance condition and its corresponding quality factor in the here-proposed circuit model, respectively. All the necessary... 

We propose a nonlinear method for the analysis of the time series for the spatial position of a bead trapped in optical tweezers, which enables us to reconstruct its dynamical equation of motion. The main advantage of the method is that all the functions and parameters of the dynamics are determined directly (non-parametrically) from the measured series. It also allows us to determine, for the first time to our knowledge, the spatial-dependence of the diffusion coefficient of a bead in an optical trap, and to demonstrate that it is not in general constant. This is in contrast with the main assumption of the popularly-used power spectrum calibration method. The proposed method is validated... 

Near field scanning optical microscopy exploiting differential interference contrast enhancement is demonstrated. Beam splitting in the near field region is implemented using a dual color probe based on plasmonic color sorter idea. This provides the ability to illuminate two neighboring points on the sample simultaneously. It is shown that by modulating the two wavelengths employed in exciting such a probe, phase difference information can be retrieved through measuring the near field photoinduced force at the difference of the two modulation frequencies. This difference in frequency is engineered to correspond to the first resonant frequency of the cantilever, resulting in improved SNR, and... 

Nowadays, the accelerated expansion of genetic data challenges speed of current DNA sequence alignment algorithms due to their electrical implementations. Essential needs of an efficient and accurate method for DNA variant discovery demand new approaches for parallel processing in real time. Fortunately, photonics, as an emerging technology in data computing, proposes optical correlation as a fast similarity measurement algorithm; while complexity of existing local alignment algorithms severely limits their applicability. Hence, in this paper, employing optical correlation for global alignment, we present an optical processing approach for local DNA sequence alignment to benefit both... 

An indirect colorimetric method is presented for detection of trace amounts of hydroquinone (1), catechol (2) and pyrogallol (3). The reduction of AuCl4- to Gold nanoparticles (Au-NPs) by these phenolic compounds in the presence of cetyltrimethylammonium chloride (CTAC) produced very intense surface plasmon resonance peak of Au-NPs. The plasmon absorbance of Au-NPs allows the quantitative colorimetric detection of the phenolic compounds. The calibration curves derived from the changes in absorbance at λ = 568 nm were linear with concentration of hydroquinone, catechol and pyrogallol in the range of 7.0 × 10-7 to 1.0 × 10-4M, 6.0 × 10-6 to 2.0 × 10-4 M and 6.0 × 10-7 to 1.0 × 10-4 M,... 

Despite various optical realizations of convolutional neural networks (CNNs), optical implementation of nonlinear activation functions and pooling operations are still challenging problems. In this regard, this paper proposes an optical saturable absorption nonlinearity and its atomic-level model, as well as two various optical pooling operations, namely optical average pooling and optical motion pooling, by means of 4f optical correlators. Proposing these optical building blocks not only speed up the neural networks due to negligible optical processing latency, but also facilitate the concatenation of optical convolutional layers with no optoelectrical conversions in-between, as the... 

In this study, optical technology is considered as SA issues' solution with the potential ability to increase the speed, overcome memory-limitation, reduce power consumption, and increase output accuracy. So we examine the effect of bio-data encoding and the creation of input images on the pattern-recognition error-rate at the output of optical Vander-lugt correlator. Moreover, we present a genetic algorithm-based coding approach, named as GAC, to minimize output noises of cross-correlating data. As a case study, we adopt the proposed coding approach within a correlation-based optical architecture for counting k-mers in a DNA string. As verified by the simulations on Salmonella whole-genome,... 

In this study, optical technology is considered as SA issues' solution with the potential ability to increase the speed, overcome memory-limitation, reduce power consumption, and increase output accuracy. So we examine the effect of bio-data encoding and the creation of input images on the pattern-recognition error-rate at the output of optical Vander-lugt correlator. Moreover, we present a genetic algorithm-based coding approach, named as GAC, to minimize output noises of cross-correlating data. As a case study, we adopt the proposed coding approach within a correlation-based optical architecture for counting k-mers in a DNA string. As verified by the simulations on Salmonella whole-genome,...