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    Computational inverse design for cascaded systems of metasurface optics: comment

    , Article Optics Express ; Volume 30, Issue 20 , 2022 , Pages 36966-37005 ; 10944087 (ISSN) Zarei, S ; Khavasi, A ; Sharif University of Technology
    Optica Publishing Group (formerly OSA)  2022
    Abstract
    In a recently published article by Backer [Opt. Express 27(21), 30308 (2019).], a computational inverse design method is developed for designing optical systems composed of multiple metasurfaces. The forward propagation model used in this method was a discretized version of the angular spectrum propagator described by Goodman [Introduction to Fourier Optics, 1996]. However, slight modifications are necessary to increase the accuracy of this inverse design method. This comment examines the accuracy of the results obtained by the above-mentioned method by a full-wave electromagnetic solver and explains the reason of their difference. Thereafter, slight modifications to the method proposed by... 

    Toward visual chiral recognition of amino acids using a wide-range color tonality ratiometric nanoprobe

    , Article Analytica Chimica Acta ; Volume 1231 , 2022 ; 00032670 (ISSN) Jafar Nezhad Ivrigh, Z ; Fahimi Kashani, N ; Morad, R ; Jamshidi, Z ; Hormozi Nezhad, M. R ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    Chiral recognition has long been a challenging issue to deal with in biological systems, drug design and food authentication. Implementing nanoparticle-based probes with intrinsic or induced chirality in this field has addressed several issues concerning sensitivity, reliability, rapidness and the cost of chiral sensing platforms. Yet, research into chiral nanoprobes that can be used for visual monitoring of chiral substances is still in its infancy. As part of this study, a visual chiral recognition platform has been developed in which a combination of blue-emitting carbon dots (BCDs) and mercaptopropionic acid-capped CdTe quantum dots (MPA-QDs) with inherent chiroptical activity were... 

    Salience memories formed by value, novelty and aversiveness jointly shape object responses in the prefrontal cortex and basal ganglia

    , Article Nature Communications ; Volume 13, Issue 1 , 2022 ; 20411723 (ISSN) Ghazizadeh, A ; Hikosaka, O ; Sharif University of Technology
    Nature Research  2022
    Abstract
    Ecological fitness depends on maintaining object histories to guide future interactions. Recent evidence shows that value memory changes passive visual responses to objects in ventrolateral prefrontal cortex (vlPFC) and substantia nigra reticulata (SNr). However, it is not known whether this effect is limited to reward history and if not how cross-domain representations are organized within the same or different neural populations in this corticobasal circuitry. To address this issue, visual responses of the same neurons across appetitive, aversive and novelty domains were recorded in vlPFC and SNr. Results showed that changes in visual responses across domains happened in the same rather... 

    Effective fusion of deep multitasking representations for robust visual tracking

    , Article Visual Computer ; Volume 38, Issue 12 , 2022 , Pages 4397-4417 ; 01782789 (ISSN) Marvasti Zadeh, S. M ; Ghanei Yakhdan, H ; Kasaei, S ; Nasrollahi, K ; Moeslund, T. B ; Sharif University of Technology
    Springer Science and Business Media Deutschland GmbH  2022
    Abstract
    Visual object tracking remains an active research field in computer vision due to persisting challenges with various problem-specific factors in real-world scenes. Many existing tracking methods based on discriminative correlation filters (DCFs) employ feature extraction networks (FENs) to model the target appearance during the learning process. However, using deep feature maps extracted from FENs based on different residual neural networks (ResNets) has not previously been investigated. This paper aims to evaluate the performance of 12 state-of-the-art ResNet-based FENs in a DCF-based framework to determine the best for visual tracking purposes. First, it ranks their best feature maps and... 

    Uncontrolled manifold analysis of gait kinematic synergy during normal and narrow path walking in individuals with knee osteoarthritis compared to asymptomatic individuals

    , Article Journal of Biomechanics ; Volume 141 , 2022 ; 00219290 (ISSN) Shafizadegan, Z ; Sarrafzadeh, J ; Farahmand, F ; Salehi, R ; Rasouli, O ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    Knee osteoarthritis (KOA) is a common musculoskeletal disorder resulting in altered gait patterns. Uncontrolled manifold (UCM) analysis has been demonstrated as a useful approach for quantitative analysis of motor variability and synergies. The present study aimed to investigate the changes in the kinematic synergy, controlling the center of mass (COM) position while walking on normal and narrow paths in people with KOA compared to asymptomatic participants. In this cross-sectional study, twenty people with mild to moderate KOA and twenty asymptomatic individuals walked at their comfortable preferred speed across normal and narrow paths on a treadmill. The UCM analysis was performed... 

    Data-driven damage assessment of reinforced concrete shear walls using visual features of damage

    , Article Journal of Building Engineering ; Volume 53 , 2022 ; 23527102 (ISSN) Mansourdehghan, S ; Dolatshahi, K. M ; Asjodi, A. H ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    This paper proposes a damage assessment framework based on the visual features of a damaged reinforced concrete shear wall, such as crack pattern distribution, crushing areal density, aspect ratio, and the presence of the boundary condition. The study contains two parts including: identifying the performance level of the damaged walls (i.e., Immediate Occupancy, Life Safety, and Collapse Prevention) and estimating the residual strength and drift ratio of the walls. The research database contains 236 images of 72 reinforced concrete shear walls tested in the laboratory under the quasi-static cyclic loadings at various drift ratios between 0 and 4%. To identify the performance level of a... 

    Determination of spermine and spermidine in meat with a ratiometric fluorescence nanoprobe and a combinational logic gate

    , Article Food Chemistry ; Volume 384 , 2022 ; 03088146 (ISSN) Abbasi-Moayed, S ; Bigdeli, A ; Hormozi Nezhad, M. R ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    A ratiometric fluorescent nanoprobe is developed with a wide color variation for visual determination of spermine (SP) and spermidine (SD) in meat samples. The green emission provided from the combination of yellow emissive quantum dots and blue emissive carbon dots turns into pink when SP or SD are present. The results show that the developed sensor has good linearity in the range of 0.5–10 and 0.5–80 µM for SP and SD and suitable detection limits were achieved including 0.2 and 2.1 µM for SP and SD. The probe was highly selective in the presence of amino acids and other biogenic amines. RGB indices were extracted to build a combinational logic gate for visual and simultaneous detection of... 

    Peak drift ratio estimation for RC moment frames using multifractal dimensions of surface crack patterns

    , Article Engineering Structures ; Volume 255 , 2022 ; 01410296 (ISSN) Hamidia, M ; Ganjizadeh, A ; Dolatshahi, K. M ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    In this paper, a novel computer-vision based methodology is developed for predicting the seismic peak drift ratio of damaged reinforced concrete moment frames using surface crack patterns. A comprehensive database comprising 974 surface crack images from cyclic test results of 256 beam-column joint specimens at various drift ratio levels is collected. The database covers a broad range of concrete compressive strengths, rebar and stirrup strengths, longitudinal and transverse reinforcement ratios, beam and column length to depth ratios, in-plane configurations, and failure modes. Multifractal dimensions of damaged beam-column subassembly images are obtained by the box-counting algorithm to... 

    Deep learning for visual tracking: a comprehensive survey

    , Article IEEE Transactions on Intelligent Transportation Systems ; Volume 23, Issue 5 , 2022 , Pages 3943-3968 ; 15249050 (ISSN) Marvasti Zadeh, S. M ; Cheng, L ; Ghanei Yakhdan, H ; Kasaei, S ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2022
    Abstract
    Visual target tracking is one of the most sought-after yet challenging research topics in computer vision. Given the ill-posed nature of the problem and its popularity in a broad range of real-world scenarios, a number of large-scale benchmark datasets have been established, on which considerable methods have been developed and demonstrated with significant progress in recent years - predominantly by recent deep learning (DL)-based methods. This survey aims to systematically investigate the current DL-based visual tracking methods, benchmark datasets, and evaluation metrics. It also extensively evaluates and analyzes the leading visual tracking methods. First, the fundamental... 

    Sensory representation of visual stimuli in the coupling of low-frequency phase to spike times

    , Article Brain Structure and Function ; Volume 227, Issue 5 , 2022 , Pages 1641-1654 ; 18632653 (ISSN) Zarei, M ; Jahed, M ; Dezfouli, M. P ; Daliri, M. R ; Sharif University of Technology
    Springer Science and Business Media Deutschland GmbH  2022
    Abstract
    Neural synchronization has been engaged in several brain mechanisms. Previous studies have shown that the interaction between the time of spiking activity and phase of local field potentials (LFPs) plays a key role in many cognitive functions. However, the potential role of this spike–LFP phase coupling (SPC) in neural coding is not fully understood. Here, we sought to investigate the role of this SPC for encoding the sensory properties of visual stimuli. To this end, we measured SPC strength in the preferred and anti-preferred motion directions of stimulus presented inside the receptive field of middle temporal (MT) neurons. We found a selective response in terms of SPC strength for... 

    Remote monitoring and control of the 2-DoF robotic manipulators over the internet

    , Article Robotica ; Volume 40, Issue 12 , 2022 , Pages 4475-4497 ; 02635747 (ISSN) Hokmi, S ; Haghi, S ; Farhadi, A ; Sharif University of Technology
    Cambridge University Press  2022
    Abstract
    This article is concerned with remote monitoring and control of the 2-degrees of freedom (DoF) robotic manipulators, which have nonlinear dynamics over the packet erasure channel, which is an abstract model for communication over the Internet, WiFi, or Zigbee modules. This type of communication is subject to imperfections, such as random packet dropout and rate distortion. These imperfections cause a significant challenge for monitoring and control of robotic manipulators in the industrial environments because sensitive data, such as sensor data and control commands may not ever reach to their destination resulting in significant performance degradation. Therefore, the effects of these... 

    Peak drift ratio estimation for unreinforced masonry walls using visual features of damage

    , Article Bulletin of Earthquake Engineering ; Volume 20, Issue 15 , 2022 , Pages 8357-8379 ; 1570761X (ISSN) Asjodi, A. H ; Dolatshahi, K. M ; Sharif University of Technology
    Springer Science and Business Media B.V  2022
    Abstract
    This study proposes predictive equations for estimating the peak-experienced drift ratio of unreinforced masonry walls based on the visual characteristic of the damages. In this regard, a comprehensive database comprised of 190 images associated with 30 unreinforced masonry walls at different drift ratios between 0.0 and 1.1 percent is collected, and the visual features of the progressive damages are extracted. Various image processing filters are implemented to the images to quantify the cracking length and crushing areas. The filters are capable of distinguishing different crack patterns, such as joint cracking and block cracking. In the following, four scenarios are introduced based on... 

    Towards robust visual transformer networks via k-sparse attention

    , Article 47th IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2022, 23 May 2022 through 27 May 2022 ; Volume 2022-May , 2022 , Pages 4053-4057 ; 15206149 (ISSN); 9781665405409 (ISBN) Amini, S ; Ghaemmaghami, S ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2022
    Abstract
    Transformer networks, originally developed in the community of machine translation to eliminate sequential nature of recurrent neural networks, have shown impressive results in other natural language processing and machine vision tasks. Self-attention is the core module behind visual transformers which globally mixes the image information. This module drastically reduces the intrinsic inductive bias imposed by CNNs, such as locality, while encountering insufficient robustness against some adversarial attacks. In this paper we introduce K-sparse attention to preserve low inductive bias, while robustifying transformers against adversarial attacks. We show that standard transformers attend... 

    Pore network-scale visualization of the effect of brine composition on sweep efficiency and speed of oil recovery from carbonates using a photolithography-based calcite microfluidic model

    , Article Journal of Petroleum Science and Engineering ; Volume 208 , 2022 ; 09204105 (ISSN) Mohammadi, M ; Nikbin Fashkacheh, H ; Mahani, H ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    A novel photolithography-based technique was developed to fabricate a quasi-2D heterogeneous calcite micromodel of representative elementary volume size. The effect of brine-chemistry on the mobilization of capillarity and heterogeneity trapped oil after high salinity water injection was evaluated by using diluted seawater, and seawater modified with calcium, sulphate, and silica nanoparticles. Preliminary brine screening was performed based on modified contact angle experiments under dynamic salinity alteration. The main findings are that the chemical composition of brine impacts both the ultimate oil recovery and its speed. The highest and fastest oil recovery was obtained with diluted... 

    Efficient generation of self-avoiding, semiflexible rotational isomeric chain ensembles in bulk, in confined geometries, and on surfaces

    , Article Computer Physics Communications ; Volume 270 , 2022 ; 00104655 (ISSN) Weismantel, O ; Galata, A. A ; Sadeghi, M ; Kröger, A ; Kröger, M ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    We provide an efficient ready-to-run code gensaw that generates single or large ensembles of self-avoiding, flexible, semiflexible, rotationally isometric or helical chains in the bulk or subject to arbitrary confinement and tethering conditions, where we allow for arbitrary intramolecular bending and dihedral energy functions. The resulting configuration files are provided in various common formats and can be immediately used to do molecular simulations or statistical analysis. We work out analytic expressions for the mean squared end-to-end distance and gyration radius of the semiflexible, helical and rotational isomeric state models with a finite number of bonds and arbitrary interaction... 

    Visual recognition of tryptophan enantiomers using chiral self assemblies of quantum DOTS

    , Article ACS Applied Nano Materials ; Volume 5, Issue 1 , 2022 , Pages 1460-1471 ; 25740970 (ISSN) Fahimi-Kashani, N ; Jafar Nezhad Ivrigh, Z ; Bigdeli, A ; Hormozi Nezhad, M. R ; Sharif University of Technology
    American Chemical Society  2022
    Abstract
    Discrimination of chiral targets is generally achieved with chiral nanomaterials. However, the limited number of intrinsic chiral nanostructures as well as their complex synthesis procedure has led to the production of chirality-induced nanomaterials as alternatives. Chirality can be induced in nanomaterials by either chirality transfer or the formation of chiral assemblies. Using the latter approach, in this work, we have provided chiral supramolecular assemblies of CdTe quantum dots (QDs) from achiral starting materials. CTAB-QD assemblies showed chiroptical activities, and their orange emission in combination with the blue emission of carbon dots was utilized as a ratiometric chiral... 

    Monitoring data quality using hoteling T 2 multivariate control chart

    , Article Communications in Statistics: Simulation and Computation ; 2021 ; 03610918 (ISSN) Ershadi, M. J ; Akhavan Niaki, S. T ; Azizi, A ; Ashtarian Esfahani, A ; Edris Abadi, R ; Sharif University of Technology
    Bellwether Publishing, Ltd  2021
    Abstract
    Nowadays, data and information are recognized as a precious resource in an organization. Data quality indicators help organizations manage the quality of data quantitatively and improve organizational processes. Organizations manage data and information with the help of information systems and make decisions within the framework of data collected and analyzed. On the other hand, continuous evaluation of the quality of data flow in systems can lead to a preventive program to formulate strategies for improving performance. This can be done effectively and efficiently in the form of control charts. In this paper, control charts are employed to monitor the quality of data flow in information... 

    Visual recognition of tryptophan enantiomers using chiral self assemblies of quantum dots

    , Article ACS Applied Nano Materials ; 2021 ; 25740970 (ISSN) Fahimi Kashani, N ; Jafar Nezhad Ivrigh, Z ; Bigdeli, A ; Hormozi Nezhad, M.R ; Sharif University of Technology
    American Chemical Society  2021
    Abstract
    Discrimination of chiral targets is generally achieved with chiral nanomaterials. However, the limited number of intrinsic chiral nanostructures as well as their complex synthesis procedure has led to the production of chirality-induced nanomaterials as alternatives. Chirality can be induced in nanomaterials by either chirality transfer or the formation of chiral assemblies. Using the latter approach, in this work, we have provided chiral supramolecular assemblies of CdTe quantum dots (QDs) from achiral starting materials. CTAB-QD assemblies showed chiroptical activities, and their orange emission in combination with the blue emission of carbon dots was utilized as a ratiometric chiral... 

    Automatic image annotation using tag relations and graph convolutional networks

    , Article 5th International Conference on Pattern Recognition and Image Analysis, IPRIA 2021, 28 April 2021 through 29 April 2021 ; 2021 ; 9781665426596 (ISBN) Lotfi, F ; Jamzad, M ; Beigy, H ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2021
    Abstract
    Automatic image annotation is a mechanism to assign a list of appropriate tags that describe the visual content of a given image. Most methods only focus on the content of the images and ignore the relationship between the tags in vocabulary. In this work, we propose a new deep learning-based automatic image annotation architecture, which considers label dependencies in a graph convolution neural network structure and extracts tag descriptors to re-weight the output class scores based on their relationships. The proposed architecture has three main parts: feature extraction, graph convolutional network, and annotation. In graph convolutional network, we apply one layer convolution on... 

    Adaptive exploitation of pre-trained deep convolutional neural networks for robust visual tracking

    , Article Multimedia Tools and Applications ; Volume 80, Issue 14 , 2021 , Pages 22027-22076 ; 13807501 (ISSN) Marvasti-Zadeh, S.M ; Ghanei Yakhdan, H ; Kasaei, S ; Sharif University of Technology
    Springer  2021
    Abstract
    Due to the automatic feature extraction procedure via multi-layer nonlinear transformations, the deep learning-based visual trackers have recently achieved a great success in challenging scenarios for visual tracking purposes. Although many of those trackers utilize the feature maps from pre-trained convolutional neural networks (CNNs), the effects of selecting different models and exploiting various combinations of their feature maps are still not compared completely. To the best of our knowledge, all those methods use a fixed number of convolutional feature maps without considering the scene attributes (e.g., occlusion, deformation, and fast motion) that might occur during tracking. As a...