Loading...
Search for: density-function-theory
0.008 seconds
Total 292 records

    Exploring of Influence of Boron on Acidity of Organic Functional Groups by DFT Calculation

    , M.Sc. Thesis Sharif University of Technology Mehrpajouh, Sima (Author) ; Fattahi, Alireza (Supervisor)
    Abstract
    Acidity values of some compound (e.g., alkanes, alcohols, carboxylic acids and amines) with or without boron substitute have been studied theoretically to evaluate the influence of boron on acidity of organic functional groups. We have derived the unoccupied reactive orbital that show the maximum localization on the boron pπ atomic orbital overlapping with the lone-pair orbital of an electron donor. Localization of unoccupied reactive orbital on the boron pπ atomic and the polarizability of the boron center are two factors which affect acidity values of functional groups. Conformational searching was performed using MM (Molecular Mechanics). The most important conformations were optimized at... 

    Effect of Correlation in SrRu03 Metal Sand LiF Insulators

    , Ph.D. Dissertation Sharif University of Technology Hadipour Siahmazgi, Hanif (Author) ; Akhavan, Mohammad (Supervisor)
    Abstract
    There is no satisfactory agreement between theory and experiment in the Hartree-Fock (HF) and density functional theory (DFT) calculation for metals, semiconductors and metals. It is clear that this discrepancy is attributed to the neglecting of correlation. For example, experimentally
    LiF have the largest band gap about 13.6 eV among the alkali halides and show an exciton peak at 12.6 eV . Brener have obtained a value of 22.9 eV for LiF band gap in the HF approximation. DFT has been very successful tool in calculating the ground-state properties of materials. As
    we expect, the band gap in LiF are underestimated in the local density approximation (LDA) calculation (about 8.3 eV) .... 

    Density Functional Study of Adsorption of Small Molecules on Nano-Clusters

    , Ph.D. Dissertation Sharif University of Technology Nahali, Masoud (Author) ; Gobal, Fereydoon (Supervisor)
    Abstract
    This work investigates adsorption and possible dissociation of a number of small molecules on small clusters and carbonic surface. Theoretical study of carbon monoxide adsorption on SixGe4_x(x=0–4) nano-clusters has been carried out using MPW1B95 density functional. The geometry, adsorption energy, charge distribution, and vibrational frequency of CO adsorption on all possible structures were investigated. The maximum vibrational frequency changes occur in the bridge structures while the most stable structures occur when CO adsorbs on one silicon atom in a flat surface. Adsorption energies of CO on one Si atom are by far more negative than the corresponding value for on Ge atom. Theoretical... 

    Ranitidine Dynamic Nuclear Magnetic Resonance

    , M.Sc. Thesis Sharif University of Technology Ghorayshi, Masoume (Author) ; Tafazzoli, Mohsen (Supervisor)
    Abstract
    In this work we have studied conformation of ranitidine by dynamic nuclear magnetic resonance spectroscopy (DNMR) in four different solvents: chloroform, acetone, dimethylsulfoxide, and deuteriumoxide. Ranitidine has three tatumeric forms of enamine, nitoic acid, and imine, but its stable structure is enamine. Temperature dependent 1HNMR spectra of ranitidine which reportet at 500MHz were consistent with the following free activation of energies ΔG# (kcal mol-1): chloroform = 16.2; acetone = 15.4; dimethylsulfoxide = 15.1. The experimental results were confirmed by DFT theoretical calculations at the B3LYP/6-311++G (d, p) level of theory. It was also proved that ranitidine has the form of... 

    Design of Addatives for use in Li-ion Batteries: A Density Functional Theory Approach

    , M.Sc. Thesis Sharif University of Technology Inanlou, Samane (Author) ; Gobal, Fereydoon (Supervisor)
    Abstract
    In Li batteries, lithium ions are exchanged between two electrodes, along with the accompaning electron transfer to maintain riability good ionic conductivities and electrolytes stability are achived through additives to the electrolyte. Such matrial should possess good anions acceptability. This work investigates the potential of aza-ethers in this regard. The softness criteris is basically employed. DFT calculation for selected molecules of different size, substituents and interacting atoms are used to correlate softness, electrophilicity, Fukui no, etc to the usefulness of the corresponding matrials  

    Theoretical Investigation of Hydrogen Bonding Effects on Acidity Enhancement of Cyclic Amides and Barbiturates in Gas and Solution Phase

    , M.Sc. Thesis Sharif University of Technology Daneshfar, Maryam (Author) ; Fattahi, Alireza (Supervisor) ; Mahmoodi Hashemi, Mohammad (Supervisor)
    Abstract
    Hydrogen bonding is an important weak interaction encountered in gas, liquid, as well as solid phase. The hydrogen bond plays a very vital role in many life processes and is one of the most frequently used terms in chemistry and biology. Amides have several applications as drugs, antibacterials and antifungals. Different substituents can affect the acidity of amides. Investigation have shown that hydroxyl function group can increase the acidity of many organic molecules through interamolecular hydrogen bonding. The goal of this project is to investigate the acidity of cyclic amides and barbiturates by adding hydroxyl group in the gas and solution phase. All the gas phase optimizations and... 

    Study of Lithium-transition Metals-orthosilicates as Cathode Materials for Li-ion Batteries

    , Ph.D. Dissertation Sharif University of Technology Kalantarian, Mohammad Mahdi (Author) ; Asgari, Sirous (Supervisor)
    Abstract
    In this study, orthosilicate materials with chemical formula of Li2MSiO4 (M one or two transition metal/metals) were investigated experimentally and theoretically as cathode material of Li-ion batteries. The most important material in this category i.e. Li2FeSiO4 was synthesized by three methods including nitrate-based sol-gel, oxalate-based solid state reaction and oxide-based solid state reaction. Based on XRD and SEM evaluations, grain size of synthesized powders was estimated to be between 15 to 100 nanometers. Of these three methods, oxide-based solid state reaction was employed in this study for the first time. This syntheses method is very important due to the significant lower... 

    The First Category of Organic Cation-Cation Cluster, A DFT Study and Synthesis of Thiazolidinedione, Rhodanine and S-Transalkylation of Dithiocarbamates

    , M.Sc. Thesis Sharif University of Technology Shokri, Alireza (Author) ; Saidi, Mohammad Reza (Supervisor) ; Fattahi, Alireza (Supervisor)
    Abstract
    In this study, using the B3LYP/6-3111++g(d,p) computational level, we have explored the possibility of formation of some organic and bioorganic cation-cation clusters (CCC) in the absence of any anionic stabilizing species. Furthermore, we have shown the existence of a barrier energy for exothermic dissociation of these clusters. Herein, we have selected some biomolecules such as the chloroquine (CQ) antimalarial drug . The selected molecules possess the basic sites and can function as both hydrogen bond donors and acceptors. Also, a facile and direct synthetic route toward the rhodanine derivatives and thiazolidine-2,4-diones via a three-component coupling of carbon disulfide, primary... 

    Synthesis, Characterization, Crystal Structure Determination and Theoretical Studies of Some new Rhenium(I)-tricarbonyl Complexes with 2,2'-bipyridine and 2,9-dimethylphenanthroline Ligands

    , M.Sc. Thesis Sharif University of Technology Safari, Fatemeh (Author) ; Kia, Reza (Supervisor)
    Abstract
    The synthesis, characterization, structural and computational studies of mononuclear Re(I) tricarbonyl complexes of 2,2'-bipyridine (2,2′-bpy) and 2,9-dimethylphenanthtroline (2,9-Me2Phen), [Re(CO)3(NN)(X)], where NN=2,2′-bpy,X=Br (1) and X=–ONO (3); NN=2,9-Me2 Phen, X=Br (2) and X= –ONO (4), were reported. The complexes characterized by crystallographic and spectroscopic methods and elemental analyses. In each complex, the Re(I) center showed the distorted octahedral geometry. Single crystal X-ray diffraction data revealed the endo-nitrito (κ1–ONO) coordination in complexes 3 and 4. It has been shown that the replacement of the bromo ligand in complexes 1 and 2, either by AgOTf/NaNO2 in a... 

    Multi-service provisioning and quality of service (QOS) guarantee in WDM optical code switched GMPLS core networks

    , Article IEEE Journal of Lightwave Technology ; Vol. 27, No. 12, PP. 1754-1762 , Jun. 2009 Beyranvandl, H ; Salehi, J. A ; Sharif University Of Technology
    Abstract
    In this paper, we propose a new scheme to provide multiservice transmission on generalized multiprotocol label switching (GMPLS) networks using optical code-division multiplexing (OCDM) in each wavelength of a wavelength-division multiplexing system. To provide multiservice transmission in a typical GMPLS network, we propose to classify the fiber bandwidth into a number of waveband and consider the wavelengths of each waveband for a specific class-of-service such that the corresponding codes to be used are designed based on the characteristics of the class-of-service. The traffic behavior of the network is examined using Erlang's model, and the probability density functions (PDF) of the... 

    Cooperativity effects of intramolecular OH...O interactions on pK a values of polyolalkyl sulfonic acids in the gas phase and solution: A density functional theory study

    , Article Journal of Physical Organic Chemistry ; Vol. 27, issue. 7 , 2014 , p. 604-612 Najdian, A ; Shakourian-Fard, M ; Fattahi, A ; Sharif University of Technology
    Abstract
    Density functional theory method and B3LYP/6-311++G(d,p) level of theory were used to determine the acidity of alkyl sulfonic acids and polyolalkyl sulfonic acids in the gas and solution (H2O, DMSO, and CH 3CN) phase. Polarized continuum model was applied to calculate pKa values of alkyl sulfonic acids and polyolalkyl sulfonic acids. A comparison between acidity of alkyl sulfonic acids and polyolalkyl sulfonic acids in the gas and solution phase indicates that the acidity strength of polyolalkyl sulfonic acids enhances with the increase of the cooperativity effect of intramolecular hydrogen bonds in polyolalkyl sulfonic acids. Natural bond orbital and quantum theory of atoms in molecules... 

    Influence of the water molecules (n 5 1-6) on the interaction between Li +, Na +, K + cations and indole molecule as tryptophan amino acid residue

    , Article Structural Chemistry ; Volume 23, Issue 3 , 2012 , Pages 857-865 ; 10400400 (ISSN) Shakourian Fard, M ; Nasiri, M ; Fattahi, A ; Vafaeezadeh, M ; Sharif University of Technology
    2012
    Abstract
    Influence of the addition of water molecules (n = 1-6) on the interaction energy between Li +, Na +, K + cations and indole molecule as tryptophan amino acid residue is considered at MP2(FULL)/6-311++G(d, p)//B3LYP/6-311++G(d,p) levels of theory. The calculations suggest that the size of cation and the number of water molecules are two important factors that affect the interaction energy between the hydrated metal cation and indole molecule. The strength of cation-π interactions get substantially reduced when the metal ion is solvated or the size of metal cation increases. Quantum theory of atoms in molecules analysis of cation-π interaction indicates that there is a correlation between the... 

    New mononuclear manganese(II) complexes with 2,4,6-tris(2-pyridyl)-1,3,5- triazine (tptz) - Selective catalyst in UHP oxidation of sulfides

    , Article Polyhedron ; Volume 34, Issue 1 , February , 2012 , Pages 202-209 ; 02775387 (ISSN) Najafpour, M. M ; Hołyńska, M ; Shamkhali, A. N ; Amini, M ; Kazemi, S. H ; Zaynalpoor, S ; Mohamadi, R ; Bagherzadeh, M ; Lis, T ; Sharif University of Technology
    2012
    Abstract
    A new manganese complex of the formula [Mn(tptz)(OH 2) 3](CF 3SO 3) 2·EtOH, (1, where tptz = (2,4,6-tris(2-pyridyl)-1,3,5-triazine) is presented, exhibiting an excellent catalytic activity and selectivity in oxidation of various sulfides to the corresponding sulfoxides with UHP (urea hydrogen peroxide) as oxidant under air at room temperature. A modified preparation procedure produces another new manganese complex of the formula [Mn(tptz)(CH 3COO)(OH 2) 2](CF 3SO 3)·3H 2O (2). X-ray structures of both Mn(II) complexes, properties (elemental analysis, electrochemistry, EPR, IR, Raman, and UV-Vis spectra), as well as DFT studies results are reported  

    Theoretical investigation on the structural and electronic properties of complexes formed by thymine and 2'-deoxythymidine with different anions

    , Article Structural Chemistry ; Volume 23, Issue 1 , July , 2012 , Pages 17-28 ; 10400400 (ISSN) Shakourian Fard, M ; Fattahi, A ; Sharif University of Technology
    2012
    Abstract
    Hydrogen bonding interactions between thymine nucleobase and 2'-deoxythymidine nucleoside (dT) with some biological anions such as F - (fluoride), Cl - (chloride), OH - (hydroxide), and NO 3 - (nitrate) have been explored theoretically. In this study, complexes have been studied by density functional theory (B3LYP method and 6-311++G (d,p) basis set). The relevant geometries, energies, and characteristics of hydrogen bonds (H-bonds) have been systematically investigated. There is a correlation between interaction energy and proton affinity for complexes of thymine nucleobase. The nature of all the interactions has been analyzed by means of the natural bonding orbital (NBO) and quantum theory... 

    Dissociative ionization of methane in an elliptical pulse shaped laser field

    , Article Journal of Molecular Structure ; Volume 1079 , January , 2015 , Pages 454-459 ; 00222860 (ISSN) Irani, E ; Sadighi Bonabi, R ; Anvari, A ; Sharif University of Technology
    Elsevier  2015
    Abstract
    The effect of strong femto-second laser pulses on the dissociation probability of methane has been investigated analytically in various arrangements. The ellipticity dependence of the dissociation probability at intensities from 1014 W cm-2 to 1016 W cm-2 for Ti:Sapphire laser is presented. A reliable calculation of the dissociation probability based on 3D time-dependent Schrodinger equation with an improved model of time-dependent density-functional theory is presented. These calculations are carried out for three different cases of elliptically polarized laser pulse, optimum convolution of dual short pulses, and two-color mixed nonresonant laser pulses. It is found that the rescattering... 

    Density functional theory prediction for oxidation and exfoliation of graphite to graphene

    , Article Applied Surface Science ; Volume 256, Issue 24 , 2010 , Pages 7596-7599 ; 01694332 (ISSN) Rasuli, R ; Iraji Zad, A ; Sharif University of Technology
    Abstract
    A density functional theory (DFT) study of graphene synthesis from graphite oxidation and exfoliation is presented. The calculated DFT results for O adsorption predict CO as a most stable bond on the graphene oxide (GO) sheet. The obtained exfoliation energy for the graphene and the GO are 143 and ∼70 mJ/m2 that verify easier exfoliation of the graphite oxide compared with the graphite. Furthermore, the DFT results show that for decreasing the exfoliation energy of the GO at least two layers of the graphite should be oxidized during the oxidation process  

    Electronic and phonon structures of BaFe2As2 superconductor by Ab-initio density functional theory

    , Article Journal of Superconductivity and Novel Magnetism ; Volume 26, Issue 1 , January , 2013 , Pages 93-100 ; 15571939 (ISSN) Sandoghchi, M ; Khosroabadi, H ; Almasi, H ; Akhavan, M ; Sharif University of Technology
    2013
    Abstract
    Electronic and phonon structures of the BaFe2As2 superconductor in the magnetic-orthorhombic phase have been investigated by the ab-initio density functional theory using the pseudopotential Quantum Espresso code. Density of state and electronic band structure for this phase has been studied, but phonon dispersion has been obtained only for the nonmagnetic-orthorhombic phase. Electronic band structure and density of states are in good agreement with other calculations in the literature. The electronic state near the Fermi energy are essentially made from Fe3d and As4p orbital that indicate in-plane conductivity in FeAs layers in this system. Comparing calculated phonon dispersions with... 

    Acidity enhancement of α-carbon of beta diketones via hydroxyl substituents: A density functional theory study

    , Article Journal of Physical Organic Chemistry ; 2020 Rahimi, M ; Fattahi, A ; Sharif University of Technology
    John Wiley and Sons Ltd  2020
    Abstract
    Density functional theory method and B3LYP/6-311++G(d,p) level of theory were used to determine the acidity of α-carbon in the hydroxyl derivatives of beta diketones in the gas phase. An investigation of acidity strength in the gas phase indicates that α-carbon of hydroxyl derivatives of beta diketones become stronger acids than the α-carbon of beta diketone itself as their conjugate bases gain more stability via both enolate and hydrogen bond formation. Natural bond orbital and quantum theory of atoms in molecules analyses also confirm the role of hydrogen bond interactions on increasing the acidity of α-carbon of hydroxyl derivatives of beta diketones. © 2020 John Wiley & Sons, Ltd  

    Efficient simulation of resonance Raman spectra with tight-binding approximations to density functional theory

    , Article Journal of Chemical Physics ; Volume 157, Issue 8 , Volume 157, Issue 8 , 2022 ; 00219606 (ISSN) Ashtari Jafari, S ; Jamshidi, Z ; Visscher, L ; Sharif University of Technology
    American Institute of Physics Inc  2022
    Abstract
    Resonance Raman spectroscopy has long been established as one of the most sensitive techniques for detection, structure characterization, and probing the excited-state dynamics of biochemical systems. However, the analysis of resonance Raman spectra is much facilitated when measurements are accompanied by Density Functional Theory (DFT) calculations that are expensive for large biomolecules. In this work, resonance Raman spectra are therefore computed with the Density Functional Tight-Binding (DFTB) method in the time-dependent excited-state gradient approximation. To test the accuracy of the tight-binding approximations, this method is first applied to typical resonance Raman benchmark... 

    What roles do boron substitutions play in structural, tautomeric, base pairing and electronic properties of uracil? NBO & AIM analysis

    , Article Journal of Physical Organic Chemistry ; Volume 25, Issue 9 , 2012 , Pages 787-796 ; 08943230 (ISSN) AliakbarTehrani, Z ; Abedin, A ; Shakourian Fard, M ; Fattahi, A ; Sharif University of Technology
    Wiley  2012
    Abstract
    The synthesis of modified versions of deoxyribonucleic acid is an area that is receiving much attention. The replacement of the nitrogen atom on the nucleobases with boron atom has provided insight into deoxyribonucleic acid and ribonucleic acid stability, recognition, and replication at the atomic level. In the present research, we investigated a detailed density functional theory study of the structural, tautomeric, base-pairing ability, bond dissociation energy, and electronic properties of two boron analogues (i.e., boron substitutions at 4-position and 5-position of uracil) of uracil nucleobase. The effects of these modifications on theirs acid-base properties have been considered. Our...