Sharif Digital Repository

Various morphologies of monoclinic CuO powders were synthesized by hydrothermal treatment of copper nitrate, copper acetate or copper sulfate. The synthesized samples were characterized by scanning electron microscopy, X-ray diffractometry, the Fourier transform infrared spectroscopy, and diffuse reflectance spectrophotometry. Antibacterial activity of the samples was studied against Escherichia coli bacteria in dark and under visible light irradiation. Although the different precursors yielded the same band gap energies (≈1.6 eV) for the synthesized CuO samples, they resulted in various morphologies (hierarchy of stabilized micro/nanostructures), specific surface areas, concentrations of... 

In this work, the individual and interaction effects of three key operating parameters of the photocatalytic disinfection process were evaluated and optimized using response surface methodology (RSM) for the first time. The chosen operating parameters were: reaction temperature, initial pH of the reaction mixture and TiO2 P-25 photocatalyst loading. Escherichia coli concentration, after 90 minutes irradiation of UV-A light, was selected as the response. Twenty sets of photocatalytic disinfection experiments were conducted by adjusting operating parameters at five levels using the central composite design. Based on the experimental data, a semi-empirical expression was established and applied... 

Antibacterial activity of tungsten oxide nanorods/microrods were studied against Escherichia coli bacteria under visible light irradiation and in dark. A two-step annealing process at temperatures up to 390 °C and 400-800 °C was applied to synthesize the tungsten oxide nanorods/microrods on tungsten foils using KOH as a catalyst. Annealing the foils at 400 °C in the presence of catalyst resulted in formation of tungsten oxide nanorods (with diameters of 50-90 nm and crystalline phase of WO3) on surface of tungsten foils. By increasing the annealing temperature up to 800 °C, tungsten oxide microrods with K2W6O19 crystalline phase were formed on the foils. The WO3 nanorods showed a strong... 

We implement an optical tweezers technique to assess the effects of chemical agents on single bacterial cells. As a proof of principle, the viability of a trapped Escherichia coli bacterium is determined by monitoring its flagellar motility in the presence of varying concentrations of ethyl alcohol. We show that the “killing time” of the bacterium can be effectively identified from the correlation statistics of the positional time series recorded from the trap, while direct quantification from the time series or associated power spectra is intractable. Our results, which minimize the lethal effects of bacterial photodamage, are consistent with previous reports of ethanol toxicity that used... 

The effect of thickness of TiO2 coating on synergistic photocatalytic activity of TiO2 (anatase)/α-Fe 2O3/glass thin films as photocatalysts for degradation of Escherichia coli bacteria in a low-concentration H2O2 solution and under visible light irradiation was investigated. Nanograined α-Fe2O3 films with optical band-gap of 2.06 eV were fabricated by post-annealing of thermal evaporated iron oxide thin films at 400 °C in air. Increase in thickness of the Fe2O3 thin film (here, up to 200 nm) resulted in a slight reduction of the optical band-gap energy and an increase in the photoinactivation of the bacteria. Sol-gel TiO2 coatings were deposited on the α-Fe2O 3 (200 nm)/glass films, and... 

We previously reported that MR01, an indigenous strain of Pseudomonas aeruginosa, was able to produce a rhamnolipid-type biosurfactant. Here, we attempted to define the structural properties of this natural product. The analysis of the extracted biosurfactant by thin-layer chromatography (TLC) revealed the presence of two compounds corresponding to those of authentic mono- and di-rhamnolipid. The identity of two structurally distinguished rhamnolipids was confirmed by 1H and 13C nuclear magnetic resonance (NMR) spectroscopy. Liquid chromatography/mass spectrometry (LC/MS) of extracted biosurfactant revealed up to seventeen different rhamnolipid congeners. Further quantification showed... 

Removal or suppression of key proteins in an essential pathway of a pathogen is expected to disrupt the pathway and prohibit the pathogen from performing a vital function. Thus disconnecting multiple essential pathways should disrupt the survival of a pathogen even when it has multiple pathways to drug resistance. We consider a scenario where the drug-resistance pathways are unknown. To disrupt these pathways, we consider a cut set S of G, where G is a connected simple graph representing the protein interaction network of the pathogen, so that G-S splits to two partitions such that the endpoints of each pathway are in different partitions. If the difference between the sizes of the two... 

Bacterial toxicity of graphene nanosheets in the form of graphene nanowalls deposited on stainless steel substrates was investigated for both Gram-positive and Gram-negative models of bacteria. The graphene oxide nanowalls were obtained by electrophoretic deposition of Mg2+-graphene oxide nanosheets synthesized by a chemical exfoliation method. On the basis of measuring the efflux of cytoplasmic materials of the bacteria, it was found that the cell membrane damage of the bacteria caused by direct contact of the bacteria with the extremely sharp edges of the nanowalls was the effective mechanism in the bacterial inactivation. In this regard, the Gram-negative Escherichia coli bacteria with an... 

Carbon nanotube (CNT)-doped TiO2 thin films with various CNT contents were synthesized by sol-gel method for visible light photoinactivation of Escherichia coli bacteria. Post annealing of the CNT-doped TiO2 thin films at 450 °C resulted in anatase TiO2 and formation of Ti-C and Ti-O-C carbonaceous bonds in the film. By increasing the CNT content, the thin films could further inactivate the bacteria in the dark. Meanwhile, as the CNT content increased from zero to 40 wt% the effective optical band gap energy of the CNT-doped TiO2 thin films annealed at 450 °C decreased from 3.2-3.3 to less than ∼2.8 eV providing light absorption in the visible region. Concerning this, visible light... 

CuO nanoparticles with average diameter of about 20. nm were accumulated on surface of sol-gel silica thin films heat treated at 300 °C in air. Heat treatment of the CuO nanoparticles at 600 °C in a reducing environment resulted in effective reduction of the nanoparticles and penetration of them into the film. While the thin films heat treated at 300 °C exhibited a strong antibacterial activity against Escherichia coli bacteria, the reducing process decreased their antibacterial activity. However, by definition of normalized antibacterial activity (antibacterial activity/surface concentration of coppers) it was found that Cu nanoparticles were more toxic to the bacteria than the CuO... 

Antibacterial activity of sol-gel synthesized Ag-TiO2 nanocomposite layer (30nm) deposited on rough anatase (a) TiO2 thin film (~200nm in thickness) was investigated against Escherichia coli bacteria, in dark and also in exposure to UV light. The nanocomposite thin films were transparent with a surface plasmon resonance absorption band at a wavelength of 410nm. The metallic silver nanoparticles with an average diameter of 30nm and fcc crystalline structure were self-accumulated on surface of a mesoporous and aqueous TiO2 layer with a capillary pore structure having a pore radius of 3.0nm. By adding the silver nanoparticles in the TiO2 layer, recombination of the photoexcited electron-hole... 

CuO flower-like microcrystals, prepared by a facile template-free thermal method, showed incredible photocatalytic activity towards degradation of Acid Blue 92 (AB92), an organic wastewater, Escherichia coli and Staphylococcus aureus pathogenic bacteria under visible light. The products were well characterised by X-ray diffraction (XRD), Brunauer–Emmett–Teller (BET), scanning electron microscope (SEM), Fourier transform infrared (FTIR), photoluminescence spectroscopy (PL) and diffuse reflectance spectra (DRS) analysis methods. The XRD pattern of the products well confirmed the formation of copper oxide crystalline phase without any other impurities. The results of the photocatalytic... 

This study reports the fabrication of a microfluidic microbial fuel cell (MFC) using nickel as a novel alternative for conventional electrodes and a non-phatogenic strain of Escherichia coli as the biocatalyst. The feasibility of a microfluidic MFC as an efficient power generator for production of bioelectricity from glucose and urea as organic substrates in human blood and urine for implantable medical devices (IMDs) was investigated. A maximum open circuit potential of 459mV was achieved for the batch-fed microfluidic MFC. During continuous mode operation, a maximum power density of 104Wm-3 was obtained with nutrient broth. For the glucose-fed microfluidic MFC, the maximum power density of... 

Superparamagnetic iron oxide nanoparticles (SPIONs) functionalized with antimicrobial agents are promising infection-targeted therapeutic platforms when coupled with external magnetic stimuli. These antimicrobial nanoparticles (NPs) may offer advantages in fighting intracellular pathogens as well as biomaterial-associated infections. This requires the development of NPs with high antimicrobial activity without interfering with the biology of mammalian cells. Here, we report the preparation of biocompatible antimicrobial SPION@gold core-shell NPs based on covalent immobilization of the antimicrobial peptide (AMP) cecropin melittin (CM) (the conjugate is named AMP-NP). The minimal inhibitory... 

Graphene oxide platelets synthesized by using a chemical exfoliation method were deposited on anatase TiO2 thin films. Postannealing of the graphene oxide/TiO2 thin films at 400 °C in air resulted in partial formation of a Ti-C bond between the platelets and their beneath thin film. By using atomic force microscopy and X-ray photoelectron spectroscopy analyses, UV-visible light-induced photocatalytic reduction of the graphene oxide platelets of the annealed graphene oxide/TiO2. thin films immersed in ethanol was studied for the different irradiation times. After 4 h of photocatalytic reduction, the vertical space between the platelets decreased from about 1.1 to less than 0.8 nm and the... 

Chitosan films have a great potential to be used for wound dressing and food-packaging applications if their physicochemical properties including water vapor permeability, optical transparency, and hydrophilicity are tailored to practical demands. To address these points, in this study, chitosan (CS) was combined with polyvinylpyrrolidone (PVP) and graphene oxide (GO) nanosheets (with a thickness of ∼1 nm and lateral dimensions of few micrometers). Flexible and transparent films with a high antibacterial capacity were prepared by solvent casting methods. By controlling the evaporation rate of the utilized solvent (1 vol % acidic acid in deionized water), self-organization of GO in the... 

Dracocephalum kotschyi essential oils obtained by hydrodistillation (HD), microwave-assisted hydrodistillation (MAHD), and solvent-free microwave extraction (SFME) were investigated by GC-FID (Gas Chromatography-Flame Ionization Detector) and GC-MS (Gas Chromatography-Mass Spectrometry). The percentage of oxygenated compounds was significantly increased from 62.52% in HD to 76.47% in MAHD, and 84.52% in SFME. Conversely, the monoterpene hydrocarbons were decreased from 30.84% in HD to 13.71% in MAHD, and 5.85% in SFME. The main compound in the essential oil obtained by HD is limonene, which accounted for more than 30% of the oil, while the percentage of this compound was reduced to 9.52% in... 

CuO flower-like microcrystals, prepared by a facile template-free thermal method, showed incredible photocatalytic activity towards degradation of Acid Blue 92 (AB92), an organic wastewater, Escherichia coli and Staphylococcus aureus pathogenic bacteria under visible light. The products were well characterised by X-ray diffraction (XRD), Brunauer–Emmett–Teller (BET), scanning electron microscope (SEM), Fourier transform infrared (FTIR), photoluminescence spectroscopy (PL) and diffuse reflectance spectra (DRS) analysis methods. The XRD pattern of the products well confirmed the formation of copper oxide crystalline phase without any other impurities. The results of the photocatalytic... 

The most important issue during synthesis of nanoparticles (NPs) is to avoid particle agglomeration and adhesion. There have been several attempts to use special substances such as organic surfactants, polymers and stable ligands for this purpose. In this study, silver NPs were synthesised with and without gelatin macromolecules, as a green natural biopolymer, which resulted in NPs with varying shapes and sizes. The effect of morphological characteristics on the antibacterial and antifungal properties of the synthesised NPs were studied, by comparing Gram-negative (Escherichia coli) versus Gram-positive (Staphylococcus aureus) bacteria as well as fungi (Candida albicans) by calculation of... 

Gating of mechanosensitive (MS) channels is driven by a hierarchical cascade of movements and deformations of transmembrane helices in response to bilayer tension. Determining the intrinsic mechanical properties of the individual transmembrane helices is therefore central to understanding the intricacies of the gating mechanism of MS channels. We used a constant-force steered molecular dynamics (SMD) approach to perform unidirectional pulling tests on all the helices of MscL in M. tuberculosis and E. coli homologs. Using this method, we could overcome the issues encountered with the commonly used constant-velocity SMD simulations, such as low mechanical stability of the helix during...