Sharif Digital Repository

Decoding behavioral aspects associated with the water molecules in confined spaces such as an interlayer space of two-dimensional nanosheets is key for the fundamental understanding of water-matter interactions and identifying unexpected phenomena of water molecules in chemistry and physics. Although numerous studies have been conducted on the behavior of water molecules in confined spaces, their reach stops at the properties of the planar ice-like formation, where van der Waals interactions are the predominant interactions and many questions on the confined space such as the possibility of electron exchange and excitation state remain unsettled. We used density functional theory and... 

BACKGROUND: Hybrid distillation–membrane setups have attracted attention in recent years due to their lower energy usage for ethanol purification. Membrane separation processes operate without heating that reduces energy demand. However, it is somewhat challenging to select the optimal material and process for a membrane purifying ethanol, especially to get an ethanol purity of 99.99% with maximum recovery. RESULTS: In this study, three different configurations of hybrid distillation–membrane setups are proposed consisting of distillation–pervaporation/vapor permeation processes by considering ceramic, polymeric and composite membranes. The design of hybrid processes is performed by coupling... 

In this paper, we study the zero error capacity of the molecular delay channel when multiple molecule types are available at the transmitter. In the molecular delay channel, each transmitted molecule (of any type) is received by a delay of at most k time slots. Depending on the number of molecules that the transmitter is allowed to release in each time slot, we consider the following three cases: (i) when the maximum number of the released molecules of each type in each time slot is restricted (ii) when the total number of the released molecules (regardless of their type) in each time slot is restricted, and (iii) when the transmitter can use only one molecule type (of its choice) in each... 

Perturbed-Chain Statistical Associating Fluid Theory Equation of State (PC-SAFT EoS) requires cross interaction parameter for each binary pair in the mixture. For real mixtures, these parameters should be corrected by binary interaction coefficients (kij's). The values of kij's are tuned by an optimization method in order to minimize the deviation from equilibrium data. The Particle Swarm Optimization (PSO) algorithm is employed for optimization of kij's due to the continuous nature of kij and highly nonlinear nature of PC-SAFT EoS. Although kij can be adjusted using the mentioned algorithm, it is cumbersome and highly time-consuming because the optimization should be performed for each pair... 

With the passage of time and more advanced societies, there is a greater emergence and incidence of disease and necessity for improved treatments. In this respect, nowadays, aptamers, with their better efficiency at diagnosing and treating diseases than antibodies, are at the center of attention. Here, in this review, we first investigate aptamer function in various fields (such as the detection and remedy of pathogens, modification of nanoparticles, antibiotic delivery and gene delivery). Then, we present aptamer-conjugated nanocomplexes as the main and efficient factor in gene delivery. Finally, we focus on the targeted co-delivery of genes and drugs by nanocomplexes, as a new exciting... 

Wettability alteration analysis form gas-repellent to gas-wet with the aid of chemical agents has been subjected of numerous studies. However, fundamental understanding of the effect of surface tension of liquid on repellency strength, the change in the intermolecular forces due to the adsorption of nanoparticles onto the rock surfaces, and exposure of treated rock in brine are not well discussed in the available literature. In this study, X-ray diffraction, Atomic Force Microscopy, scanning electron microscopy, and energy-dispersive X-ray spectroscopy were applied to characterize the treated and fresh samples. Dynamic and static contact angle measurements were then combined with six methods... 

Systematic delivery of therapeutic agents to specific sites, with a stimulus-responsive drug release profile is currently a rapidly growing area. Mesoporous silica nanoparticles (MSNs) are the useful platforms as drug/gene delivery systems due to their unique properties including the ability to control the pore size, high porosity, and morphology, which can directly affect the mechanism and profile of drug release. The appropriate fabrication strategy can tailor the particle shape and size, leading to enhanced delivery and release mechanisms. The MSN surface can be modified by using either organic or inorganic molecules to induce smart and site-specific drug delivery and release.... 

In this study, the mechanisms of passing water and salt ions through nanoporous single-layer graphene membrane are simulated using classical molecular dynamics. The effects of functional groups placed in nanopores and feed water's salt concentration on water desalination are investigated. In order to understand the role of functional groups in desalination process, Methyl, Ethyl and a combination of Fluorine and Hydrogen molecules are distributed around the nanopores. In all cases, different number of functional molecules is employed in order to find an optimum distribution of the groups at hand. The results show that an appropriate distribution of Alkyl groups can properly stop the salt... 

The lipase-immobilized polyethyleneimine (PEI)- and polyacrylic acid (PAA)–coated magnetic silica nanocomposite particles (L-PEI-MS and L-PAA-MS, respectively) were prepared and applied at various transesterification reaction conditions. The reactions were carried out with soybean, sunflower, canola, and palm oils along with methanol or ethanol in the solvent-free and n-hexane systems. The highest fatty acid methyl ester (FAME) and fatty acid ethyl ester (FAEE) synthesis yields were obtained from the transesterification of palm oil, i.e., almost 7.7–10.2% higher than other oils. At the constant reaction conditions, the application of ethanol leads to higher (6.0–8.7%) reaction yields in... 

Various mixtures of surfactants and nanosilica particles were investigated to assess their influence on rising bubble hydrodynamics. For this purpose, local velocities of rising bubbles were measured experimentally. Also, the effects of concentration of three types of surface-modified silica nanoparticles on density, viscosity, and surface tension of surfactant solutions were determined. Experimental results revealed that the simultaneous presence of nanoparticles and surfactant molecules led to the decrease of local velocities of rising bubbles. The presence of nanoparticles in surfactant solutions leads to a more reduction of bubble local velocity. This could be caused by the formation of... 

The emergence of textile-based wearable sensors as light-weight portable devices to monitor desired parameters, has recently gained much interest and has led to the development of flexible electronics on non-rigid substrates. The flexible biosensors may result in improved sports performance, to monitor the desired bodies for injuries, improved clinical diagnostics and monitor biological molecules and ions in biological fluids such as saliva, sweat. In addition, they could help users with different types of disorders such as blindness. In this context, new composite and nanomaterials have been found to be promising candidates to obtain improved performance of the textile based wearable... 

In the present study, a model was proposed to determine the elastic properties of the family of fullerenes at different temperatures (between 300 and 2000 K) using a combination of molecular dynamics simulation and continuum shell theory. The fullerenes molecules examined here are eight spherical fullerenes, including C60, C80, C180, C240, C260, C320, C500, and C720. First, the breathing mode frequency and the radius of gyration of the molecules were obtained at different temperatures by molecular dynamics simulations using AIREBO potential. Then, these data were used in a continuum model to obtain the elastic coefficients of these closed clusters of carbon in terms of temperature changes.... 

Molecular machines and surface rolling molecules show great potential to accomplish different tasks in several fields, such as bottom-up assembly and nanomanipulation. Many researchers have investigated molecular machines, most of which was on a flat single-crystal substrate. In this paper, we studied the influence of vacancies in different sizes on the motion of a nanocar, a nanotruck, and C60 on a gold substrate at different temperatures by employing classical all-atom molecular dynamics. At the temperature of 200 K, a hole or vacancy appears as a repellent obstacle in the path of C60, and at higher temperatures, C60 can enter this hole. Although C60 has enough energy to escape single-atom... 

The effects of liquid density variation at the bubble surface on the dynamics of a single acoustic cavitation bubble are numerically studied. The Gilmore model together with a comprehensive hydrochemical model is used. The evaporation and condensation of water vapor are included in the hydrochemical model. The simulation results are compared to those resulting from the widely known Keller-Miksis model, which assumes a constant liquid density at the bubble surface. The numerical results for a single argon bubble in water reveal that the pressure and the temperature inside the bubble in collapse phase significantly increase, when the non-constant liquid density is used. These differences... 

This study aims to elucidate the impact of salinity on the interactions governing the adsorption of polar aromatic oil compounds onto calcite. To this end, molecular dynamics simulations were employed to assess adsorption of a model polar organic molecule (deprotonated benzoic acid, benzoate) on the calcite surface in NaCl brines of different concentration levels, namely, deionized water (DW), low-salinity water (LS, 5000 ppm), and sea water (SW; 45,000 ppm). Calcite was found to be completely covered by several well-ordered water layers. The top hydration layer is very compact and prevents direct adsorption of benzoates onto the substrate. Instead, Na+ ions form a distinct positively... 

The unusual monosaccharaides such as deoxy-hexose sugars, including methyl-pentose and aldo-pentose, are promising and important sugars in life science. However, little research on H-bond interactions in these systems has been reported. The aldo-pentose has a proton instead of the CH2OH group on C5; conversely, methyl-pentose has a CH3 group on C5. The aim of the present study is to investigate the role and nature of intramolecular H-bonds on acidity of CH3-pentose sugars (L-fucose and L-rhamnose) and aldo-pentose sugars (D-xylose, L-lyxose, D-ribose, and L-arabinose) using B3LYP/6-311++G (d, p) level. The calculated acidity values (ΔHacid) of these Dexoy-hexose were found to be from 343 to... 

The UiO-66 NH2 and ZIF-8 metal organic framework nanoparticles (NMOFs) were incorporated into the polyvinylidene fluoride (PVDF) nanofibrous membrane. Then, the chitosan nanofibers were coated on the PVDF nanofibers to produce the PVDF/chitosan nanofibers. The performance of synthesized PVDF/NMOFs single layer and PVDF/chitosan/NMOFs two layers nanofibrous membranes was investigated for BSA protein molecules and Cr(VI) ions separation via ultrafiltration membrane process. The potential of synthesized nanofibers was also examined for BSA and Cr(VI) adsorption in a batch system. The characteristics of synthesized nanofibrous membranes were determined using SEM, EDX, TGA, BET, porosity and... 

Porphyrins are organic compounds that continue to attract much theoretical interest, and have been called the “pigments of life”. They have a wide role in photodynamic and sonodynamic therapy, along with uses in magnetic resonance, fluorescence and photoacoustic imaging. There is a vast range of porphyrins that have been isolated or designed, but few of them have real clinical applications. Due to the hydrophobic properties of porphyrins, and their tendency to aggregate by stacking of the planar molecules they are difficult to work with in aqueous media. Therefore encapsulating them in nanoparticles (NPs) or attachment to various delivery vehicles have been used to improve delivery... 

Density functional theory method and B3LYP/6-311++G(d,p) level of theory were used to determine the acidity of α-carbon in the hydroxyl derivatives of beta diketones in the gas phase. An investigation of acidity strength in the gas phase indicates that α-carbon of hydroxyl derivatives of beta diketones become stronger acids than the α-carbon of beta diketone itself as their conjugate bases gain more stability via both enolate and hydrogen bond formation. Natural bond orbital and quantum theory of atoms in molecules analyses also confirm the role of hydrogen bond interactions on increasing the acidity of α-carbon of hydroxyl derivatives of beta diketones. © 2020 John Wiley & Sons, Ltd  

Easily assembled and biocompatible chitosan/hyaluronic acid nanoparticles with multiple stimuli-responsive ability are ideally suited for efficient delivery of therapeutic agents under specific endogenous triggers. We report a simple and versatile strategy to formulate oxidative stress and pH-responsive chitosan/hyaluronic acid nanocarriers with high encapsulation efficiencies of small drug molecules and nerve growth factor protein. This is achieved through invoking the dual role of a thioketal-based weak organic acid to disperse and functionalize low molecular weight chitosan in one-pot. Thioketal embedded chitosan/hyaluronic acid nanostructures respond to oxidative stress and show...