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Superparamagnetic iron oxide nanoparticles (SPIONs): Development, surface modification and applications in chemotherapy
, Article Advanced Drug Delivery Reviews ; Volume 63, Issue 1-2 , January–February , 2011 , Pages 24-46 ; 0169409X (ISSN) ; Sant, S ; Wang, B ; Laurent, S ; Sen, T ; Sharif University of Technology
2011
Abstract
At present, nanoparticles are used for various biomedical applications where they facilitate laboratory diagnostics and therapeutics. More specifically for drug delivery purposes, the use of nanoparticles is attracting increasing attention due to their unique capabilities and their negligible side effects not only in cancer therapy but also in the treatment of other ailments. Among all types of nanoparticles, biocompatible superparamagnetic iron oxide nanoparticles (SPIONs) with proper surface architecture and conjugated targeting ligands/proteins have attracted a great deal of attention for drug delivery applications. This review covers recent advances in the development of SPIONs together...
Substrate oscillations boost recombinant protein release from Escherichia coli
, Article Bioprocess and Biosystems Engineering ; Volume 37, Issue 5 , May , 2014 , Pages 881-890 ; ISSN: 16157591 ; Herwig, C ; Sharif University of Technology
Abstract
Intracellular production of recombinant proteins in prokaryotes necessitates subsequent disruption of cells for protein recovery. Since the cell disruption and subsequent purification steps largely contribute to the total production cost, scalable tools for protein release into the extracellular space is of utmost importance. Although there are several ways for enhancing protein release, changing culture conditions is rather a simple and scalable approach compared to, for example, molecular cell design. This contribution aimed at quantitatively studying process technological means to boost protein release of a periplasmatic recombinant protein (alkaline phosphatase) from E. coli....
Study potential of indigenous pseudomonas aeruginosa and bacillus subtilis in bioremediation of diesel-contaminated water
, Article Water, Air, and Soil Pollution ; Volume 228, Issue 1 , 2017 ; 00496979 (ISSN) ; Kariminia, H. R ; Ghobadi Nejad, Z ; Fletcher, T. H ; Sharif University of Technology
Abstract
Petroleum products which are used in a wide variety of industries as energy sources and raw materials have become a major concern in pollution of terrestrial and marine environments. The purpose of this study was to assess the potential of indigenous microbial isolates for degradation of diesel fuel. Two most proficient bacterial strains among five isolated strains from polluted soil of an industrial refinery were studied. The isolates then were identified as Pseudomonas aeruginosa and Bacillus subtilis using biochemical tests and 16S rRNA gene sequence analyses. P. aeruginosa showed higher biodegradation efficiency than B. subtilis in shaking flask containing diesel-contaminated water. P....
Structural characterization of a rhamnolipid-type biosurfactant produced by Pseudomonas aeruginosa MR01: Enhancement of di-rhamnolipid proportion using gamma irradiation
, Article Colloids and Surfaces B: Biointerfaces ; Volume 81, Issue 2 , 2010 , Pages 397-405 ; 09277765 (ISSN) ; Abassi, H ; Ahmadkhaniha, R ; Roostaazad, R ; Masoomi, F ; Zahiri, H. S ; Ahmadian, G ; Vali, H ; Noghabi, K. A ; Sharif University of Technology
2010
Abstract
We previously reported that MR01, an indigenous strain of Pseudomonas aeruginosa, was able to produce a rhamnolipid-type biosurfactant. Here, we attempted to define the structural properties of this natural product. The analysis of the extracted biosurfactant by thin-layer chromatography (TLC) revealed the presence of two compounds corresponding to those of authentic mono- and di-rhamnolipid. The identity of two structurally distinguished rhamnolipids was confirmed by 1H and 13C nuclear magnetic resonance (NMR) spectroscopy. Liquid chromatography/mass spectrometry (LC/MS) of extracted biosurfactant revealed up to seventeen different rhamnolipid congeners. Further quantification showed...
Stimulus-specific adaptation decreases the coupling of spikes to LFP phase
, Article Frontiers in Neural Circuits ; Volume 13 , 2019 ; 16625110 (ISSN) ; Zarei, M ; Jahed, M ; Daliri, M. R ; Sharif University of Technology
Frontiers Media S.A
2019
Abstract
Stimulus repetition suppresses the neural activity in different sensory areas of the brain. This mechanism of so-called stimulus-specific adaptation (SSA) has been observed in both spiking activity and local field potential (LFP) responses. However, much remains to be known about the effect of SSA on the spike–LFP relation. In this study, we approached this issue by investigating the spike-phase coupling (SPC) in control and adapting paradigms. For the control paradigm, pure tones were presented in a random unbiased sequence. In the adapting paradigm, the same stimuli were presented in a random pattern but it was biased to an adapter stimulus. In fact, the adapter occupied 80% of the...
Stimuli-responsive chitosan as an advantageous platform for efficient delivery of bioactive agents
, Article Journal of Controlled Release ; Volume 317 , 2020 , Pages 216-231 ; Tavakolian, M ; Yazdani, H ; Frounchi, M ; van de Ven, T. G. M ; Maysinger, D ; Kakkar, A ; Sharif University of Technology
Elsevier B.V
2020
Abstract
Despite a diverse range of active pharmaceutical agents currently at our disposal, high morbidity rate diseases continue to pose a major health crisis globally. One of the important parameters in this regard is the controlled cargo delivery at desired sites. Among a variety of synthetic and natural macromolecular systems, chitosan, an abundant biopolymer, offers a platform for tailored architectures that could have high loading capacity of cargo, target and deliver. Stimuli directed accumulation of vehicles and drug release is an area of direct relevance to biomedical applications. In this review, we highlight essential characteristics of modified chitosan that present themselves for...
Statistical screening of medium components for recombinant production of Pseudomonas aeruginosa ATCC 9027 rhamnolipids by nonpathogenic cell factory pseudomonas putida KT2440
, Article Molecular Biotechnology ; Vol. 56, issue. 2 , 2014 , p. 175-191 ; Jahanmiri, A ; Eslamloueyan, R ; Niazi, A ; Ayatollahi, S. S ; Aram, F ; Mahmoodi, M ; Hortamani, A ; Sharif University of Technology
Abstract
Rhamnolipids (RLs) produced by the opportunistic human pathogen Pseudomonas aeruginosa are considered as potential candidates for the next generation of surfactants. Large-scale production of RLs depends on progress in strain engineering, medium design, operating strategies, and purification procedures. In this work, the rhlAB genes extracted from a mono-RLs-producing strain of P. aeruginosa (ATCC 9027) were introduced to an appropriate safety host Pseudomonas putida KT2440. The capability of the recombinant strain was evaluated in various media. As a prerequisite for optimal medium design, a set of 32 experiments was performed in two steps for screening a number of macro-nutritional...
Simvastatin-loaded nano-niosomes confer cardioprotection against myocardial ischemia/reperfusion injury
, Article Drug Delivery and Translational Research ; Volume 12, Issue 6 , 2022 , Pages 1423-1432 ; 2190393X (ISSN) ; Mousavi Niri , N ; Akbarzade, I ; Sharifi, M ; Aboutaleb, N ; Sharif University of Technology
Springer
2022
Abstract
Although simvastatin (SIM) has been proven to be a powerful agent against myocardial ischemia/reperfusion (MI/R) injury, poor water solubility, short half-life, and low bioavailability have made it futile while using conventional drug delivery system. Hence, this study aims to investigate therapeutic efficacy of SIM-loaded nano-niosomes on MI/R injury. Surface active agent film hydration method was used to synthesize nano-niosomes. The physicochemical properties of nano-niosomes were characterized using dynamic light scattering (DLS) and transmission electron microscopy (TEM). Moreover, niosomes were characterized in entrapment efficiency (EE) and releasing pattern. Male Wistar rats were...
Simultaneous leaching of Cu, Al, and Ni from computer printed circuit boards using Penicillium simplicissimum
, Article Resources, Conservation and Recycling ; Volume 177 , 2022 ; 09213449 (ISSN) ; Arshadi, M ; Yaghmaei, P.O. C. A. P. E. D. S ; Sharif University of Technology
Elsevier B.V
2022
Abstract
A short lifespan and increased consumption patterns make e-waste the world's fastest-growing waste stream. Computers are one of the most significant parts of e-waste. Recycling of e-waste has been introduced as the main solution to deal with environmental problems and to save natural mines. This research aims to investigate the bioleaching of Cu, Ni, and Al from computer printed circuit boards (CPCBs) using Penicillium simplicissimum. The adaptation phase began at 1 g/l CPCBs powder with 107 spores and final pulp density was reached at 30 g/l. The most effective parameters including pulp density, initial pH, and the sucrose concentration were optimized to achieve maximum simultaneous...
Simultaneous detection and identification of thiometon, phosalone, and prothioconazole pesticides using a nanoplasmonic sensor array
, Article Food and Chemical Toxicology ; Volume 151 , 2021 ; 02786915 (ISSN) ; Abbasi Moayed, S ; Ghasemi, F ; Mahdavi, V ; Hormozi Nezhad, M. R ; Sharif University of Technology
Elsevier Ltd
2021
Abstract
In this work, a colorimetric sensor array has been designed for the identification and discrimination of thiometon (TM) and phosalone (PS) as organophosphate pesticides and prothioconazole (PC) as a triazole pesticide. For this purpose, two different plasmonic nanoparticles including unmodified gold nanoparticles (AuNPs) and unmodified silver nanoparticles (AgNPs) were used as sensing elements. The principle of the proposed strategy relied on the aggregation AuNPs and AgNPs through the cross-reactive interaction between the target pesticides and plasmonic nanoparticles. Therefore, these aggregation-induced UV–Vis spectra changes were utilized to discriminate the target pesticides with the...
Simulation of blood oxygenation in capillary membrane oxygenators using modified sulfite solution
, Article Biophysical Chemistry ; Vol. 195, issue , Dec , 2014 , p. 8-15 ; Amoabediny, G ; Rasouli, A ; Ramedani, A ; Poorkhalil, A ; Kashefi, A ; Mottaghy, K ; Sharif University of Technology
Abstract
Blood oxygenation is the main performance characteristic of capillary membrane oxygenators (CMOs). Handling of natural blood in in vitro investigations of CMOs is quite complex and time-consuming. Since the conventional blood analog fluids (e.g. water/glycerol) lack a substance with an affinity to capture oxygen comparable to hemoglobin's affinity, in this study a novel approach using modified sulfite solution is proposed to address this challenge. The solution comprises sodium sulfite as a component, simulating the role of hemoglobin in blood oxygenation. This approach is validated by OTR (oxygen transfer rate) measured using native porcine blood, in two types of commercially available...
Silver nanoparticles with gelatin nanoshells: Photochemical facile green synthesis and their antimicrobial activity
, Article Journal of Nanoparticle Research ; Volume 13, Issue 10 , October , 2011 , Pages 4647-4658 ; 13880764 (ISSN) ; Soleyman, R ; Sharif University of Technology
2011
Abstract
In the current study, a facile green synthesis of silver-gelatin core-shell nanostructures (spherical, spherical/cubic hybrid, and cubic, DLS diameter: 4.1-6.9 nm) is reported via the wet chemical synthesis procedure. Sunlight-UV as an available reducing agent cause mild reduction of silver ions into the silver nanoparticles (Ag-NPs). Gelatin protein, as an effective capping/shaping agent, was used in the reaction to self-assemble silver nanostructures. The formation of silver nanostructures and their self-assembly pattern was confirmed by SEM, AFM, and TEM techniques. Further investigations were carried out using zeta-potential, UV-Vis, FTIR, GPC, and TGA/DTG/DTA data. The prepared Ag-NPs...
Shape-controlled silver NPs for shape-dependent biological activities
, Article Micro and Nano Letters ; Volume 12, Issue 9 , 2017 , Pages 647-651 ; 17500443 (ISSN) ; Yazdanpanah, A ; Abrishamkar, A ; Moztarzadeh, F ; Ramedani, A ; Pouraghaie, S ; Shirinzadeh, H ; Samadikuchaksaraei, A ; Chauhan, N. P. S ; Hopkinson, L ; Sefat, F ; Mozafari, M ; Sharif University of Technology
Abstract
The most important issue during synthesis of nanoparticles (NPs) is to avoid particle agglomeration and adhesion. There have been several attempts to use special substances such as organic surfactants, polymers and stable ligands for this purpose. In this study, silver NPs were synthesised with and without gelatin macromolecules, as a green natural biopolymer, which resulted in NPs with varying shapes and sizes. The effect of morphological characteristics on the antibacterial and antifungal properties of the synthesised NPs were studied, by comparing Gram-negative (Escherichia coli) versus Gram-positive (Staphylococcus aureus) bacteria as well as fungi (Candida albicans) by calculation of...
Separation of phenolic glycolipids in mycobacterium bovis BCG by reversed-phase high performance liquid chromatography
, Article Pakistan Journal of Pharmaceutical Sciences ; Volume 22, Issue 2 , 2009 , Pages 145-149 ; 1011601X (ISSN) ; Pourabdi, L ; Zakeri, M ; Abdipour, N ; Sharif University of Technology
2009
Abstract
A crude phenolic glycolipid extract from Mycobacterium bovis BCG was fractionated by column chromatography. A reversed-phase high performance liquid chromatography (HPLC) method with UV detection at 275nm was developed for simultaneous detection and separation of phenolic glycolipids (PGLs) in Mycobacterium bovis BCG. This analysis provides a good resolution. Different solvent systems and columns for HPLC were compared. A system composed of acetonitrile-water in the ratio of 0→80% at a flow rate of 0.8 mL/min and C8 analytical column were found to be optimum for HPLC of the phenolic glycolipids. This simple method is therefore appropriate to purify these compounds present in M. bovis extract...
Sensory representation of visual stimuli in the coupling of low-frequency phase to spike times
, Article Brain Structure and Function ; Volume 227, Issue 5 , 2022 , Pages 1641-1654 ; 18632653 (ISSN) ; Jahed, M ; Dezfouli, M. P ; Daliri, M. R ; Sharif University of Technology
Springer Science and Business Media Deutschland GmbH
2022
Abstract
Neural synchronization has been engaged in several brain mechanisms. Previous studies have shown that the interaction between the time of spiking activity and phase of local field potentials (LFPs) plays a key role in many cognitive functions. However, the potential role of this spike–LFP phase coupling (SPC) in neural coding is not fully understood. Here, we sought to investigate the role of this SPC for encoding the sensory properties of visual stimuli. To this end, we measured SPC strength in the preferred and anti-preferred motion directions of stimulus presented inside the receptive field of middle temporal (MT) neurons. We found a selective response in terms of SPC strength for...
Self-modeling curve resolution techniques applied to comparative analysis of volatile components of Iranian saffron from different regions
, Article Analytica Chimica Acta ; Volume 662, Issue 2 , 2010 , Pages 143-154 ; 00032670 (ISSN) ; Parastar, H ; Ebrahimi Najafabadi, H ; Sharif University of Technology
Abstract
Volatile components of saffron from different regions of Iran were extracted by ultrasonic-assisted solvent extraction (USE) and were analyzed by gas chromatography-mass spectrometry (GC-MS). Self-modeling curve resolution (SMCR) was proposed for resolving the co-eluted GC-MS peak clusters into pure chromatograms and mass spectra. Multivariate curve resolution-objective function minimization (MCR-FMIN) and multivariate curve resolution-alternating least square (MCR-ALS) were successfully used for this purpose. The accuracy of the qualitative and quantitative results was improved considerably using SMCR techniques. Comparison of the results of saffron from different regions of Iran showed...
Seasonal variations in the oxidative stress and inflammatory potential of PM2.5 in Tehran using an alveolar macrophage model; The role of chemical composition and sources
, Article Environment International ; Volume 123 , 2019 , Pages 417-427 ; 01604120 (ISSN) ; Antkiewicz, D. S ; Hemming, J. D. C ; Shafer, M. M ; Lai, A. M ; Arhami, M ; Hosseini, V ; Schauer, J. J ; Sharif University of Technology
Elsevier Ltd
2019
Abstract
The current study was designed to assess the association between temporal variations in urban PM2.5 chemical composition, sources, and the oxidative stress and inflammatory response in an alveolar macrophage (AM) model. A year-long sampling campaign collected PM2.5 samples at the Sharif University in Tehran, Iran. PM-induced reactive oxygen species (ROS) production was measured both with an acellular dithiothreitol consumption assay (DTT-ROS; ranged from 2.1 to 9.3 nmoles min−1 m−3) and an in vitro macrophage-mediated ROS production assay (AM-ROS; ranged from 125 to 1213 μg Zymosan equivalents m−3). The production of tumor necrosis factor alpha (TNF-α; ranged from ~60 to 518 pg TNF-α m−3)...
SAR thresholds for electromagnetic exposure using functional thermal dose limits
, Article International Journal of Hyperthermia ; Volume 34, Issue 8 , 2018 , Pages 1248-1254 ; 02656736 (ISSN) ; Paulides, M. M ; Van Rhoon, G. C ; Sharif University of Technology
Taylor and Francis Ltd
2018
Abstract
Background and purpose: To protect against any potential adverse effects to human health from localised exposure to radio frequency (100 kHz–3 GHz) electromagnetic fields (RF EMF), international health organisations have defined basic restrictions on specific absorption rate (SAR) in tissues. These exposure restrictions incorporate safety factors which are generally conservative so that exposures that exceed the basic restrictions are not necessarily harmful. The magnitude of safety margin for various exposure scenarios is unknown. This shortcoming becomes more critical for medical applications where the safety guidelines are required to be relaxed. The purpose of this study was to quantify...
Role of endurance training in preventing pathological hypertrophy via large tumor suppressor (LATS) changes
, Article Iranian Heart Journal ; Volume 20, Issue 3 , 2019 , Pages 52-59 ; 17357306 (ISSN) ; Soori, R ; Choobineh, S ; Gholipour, M ; Sharif University of Technology
Iranian Heart Association
2019
Abstract
Background: One of the negative effects of cardiac sympathetic hyperactivity is pathologic hypertrophy. Recent studies have indicated that large tumor suppressor (LATS) is one of the molecules which play a critical role in cardiomyocyte apoptosis. Considering the preventive role of exercise training, we evaluated the effects of endurance training on LATS gene expression and its upstream pathway in the present study. Methods: Eighteen male Wistar rats were randomly divided into 2 groups: Endurance and control. Endurance training was performed for 8 weeks, 1 hour per day, and 6 days per week on the treadmill at a 15° inclination. Pathologic hypertrophy was induced with the injection of 3...
RMet: An automated R based software for analyzing GC-MS and GC×GC-MS untargeted metabolomic data
, Article Chemometrics and Intelligent Laboratory Systems ; Volume 194 , 2019 ; 01697439 (ISSN) ; Parastar, H ; Sharif University of Technology
Elsevier B.V
2019
Abstract
Gas chromatography-mass spectrometry (GC-MS) and comprehensive two-dimensional gas chromatography-mass spectrometry (GC×GC-MS) are powerful techniques for measurement of all metabolites in complex metabolic samples. However, analyzing GC-MS and especially GC×GC-MS metabolomic data is a major challenge to the researchers in the field of metabolomics mainly due to the complexity and large data size. In this regard, an automated R based software entitled RMet has been developed to overcome the challenges in the metabolomic analysis workflow of GC-MS and GC×GC-MS data sets. Additionally, it is able to facilitate the complex process of extracting reliable and useful biological information from...