Sharif Digital Repository

Background: Muscle synergy is the leading hypothesis on how the central nervous system coordinates limb functions. Cerebral palsy (CP) patients utilize fewer synergies, and are believed to have a simpler neuromuscular control. This study was undertaken to determine whether consistent muscle synergies are recruited during ambulation in cerebral palsy crouch gait and how the muscles contribute to such synergies. Methods: Ten ambulatory CP patients were recruited. All walked with crouch gait. sEMG data were collected from 14 lower limb muscles during gait analysis. Non-negative matrix factorization method was utilized to extract muscle synergies. Results and significance: A total of five... 

This paper describes the construction of a silver-based LSPR biosensor for endotoxin detection. We used GLAD method to procure reproducible silver nanocolumns. In this work, the silver nanostructures were considerably stabilized by a SAM of MPA, and the limit of detection of biosensor was measured to be 340 pg/ml for endotoxin E. coli. Considering endotoxin B. abortus as the second type of endotoxin contamination in our target samples (HBs-ag produced in Institute Pasteur, Iran), we investigated selectivity of the biosensor in various experiments. We showed that this biosensor can selectively detect both types of endotoxins compared to other biological species. Overall, this study proposes... 

Herein, we demonstrate a facile low temperature approach to prepare a gel polymer electrolyte (GPE) based on the triiodide/iodide redox couple in a quasi-solid-state dye-sensitized solar cell (DSSC). Only one polymeric agent (i.e., hydroxypropyl cellulose (HPC)) is used for the preparation of a non-volatile GPE system for the standard liquid electrolyte containing 1-methyl-3-propylimidazolium iodide (MPII). The prepared GPE completely penetrates into a TiO2 photoanode at room temperature due to the uniform distribution of Ti, Ru and I elements in the cross-section of the electrode, forming an interpenetrating GPE/TiO2 network to access all dye molecules. The GPE with the optimum HPC : MPII... 

Sol composition and ripening conditions are two important parameters in silica fiber production through the conventional sol-gel process. In the current study, silica nanofibers were successfully obtained via the electrospinning technique, and sol-gel formation occurred during this process. Based on previous reports, with the aim of increasing the selectivity, we used the molecular imprinted methodology to produce a selective medium via sol-gel electrospinning. In this process, sol-gel was formed during electrospinning and then, the backbone polymer was removed by heating. To obtain a thin layer of silica nanofibers, the influencing parameters such as backbone polymer types, imprinting time... 

Actin is known as the most abundant essentially protein in eukaryotic cells. Actin plays a crucial role in many cellular processes involving mechanical forces such as cell motility, adhesion, muscle contraction, and intracellular transport. However, little is known about the mechanical properties of this protein when subjected to mechanical forces in cellular processes. In this article, a series of large-scale molecular dynamics simulations are carried out to elucidate nanomechanical behavior such as elastic and viscoelastic properties of a single actin filament. Here, we used two individual methods namely, all-atoms and coarse-grained molecular dynamics, to evaluate elastic properties of a... 

The study of electrocardiogram (ECG) waveform amplitudes, timings and patterns has been the subject of intense research, for it provides a deep insight into the diagnostic features of the heart's functionality. In some recent works, a Bayesian filtering paradigm has been proposed for denoising and compression of ECG signals. In this paper, it is shown that this framework may be effectively used for ECG beat segmentation and extraction of fiducial points. Analytic expressions for the determination of points and intervals are derived and evaluated on various real ECG signals. Simulation results show that the method can contribute to and enhance the clinical ECG beat segmentation performance. ©... 

The formation of atomic nanoclusters on suspended graphene sheets has been investigated by employing a molecular dynamics simulation at finite temperature. Our systematic study is based on temperature-dependent molecular dynamics simulations of some transition and alkali atoms on suspended graphene sheets. We find that the transition atoms aggregate and make various size nanoclusters distributed randomly on graphene surfaces. We also report that most alkali atoms make one atomic layer on graphene sheets. Interestingly, the potassium atoms almost deposit regularly on the surface at low temperature. We expect from this behavior that the electrical conductivity of a suspended graphene doped by... 

Due to its high discharge capacity, low cost, and good safety, LiNi0.5Co0.2Mn0.3O2 (NCM 523) is regarded as a promising cathode material for the next-generation of lithium-ion batteries. However, poor cycling stability and rate capability are the main disadvantages of the NCM 523 cathode material. In this work, SiO2 single layer-coated and reduced graphene oxide (outer)/SiO2 (inner) double layer-coated NCM 523 have been prepared by a facile wet chemical method. Field emission scanning electron microscopy (FESEM), energy dispersive X-ray (EDX) analysis, transmission electron microscopy (TEM), Raman spectroscopy and Fourier transform infrared (FTIR) spectroscopy results confirm that NCM 523... 

Iran is the fourth refugee-hosting country and Afghanistan is the second refugee-source country in the world. This research is qualitative and conducted with content analysis method. Twenty-seven individuals participated in the study. They were recruited from two midterm residential drug treatment centers in Tehran. Afghan refugees who use drugs felt and experienced stigma in five areas: family, friends, workplace, neighborhood, and treatment center. The consequences include frequent treatment failure, family relationship disruption, superficial conformity with the host society, and self-stigma. It is necessary to design interventions to reduce stigma and discrimination attached to refugees.... 

Microfluidic droplet generators excel in generating monodisperse micrometer-sized droplets and particles. However, the low throughput of conventional droplet generators hinders their clinical and industrial translation. Current approaches to parallelize microdevices are challenged by the two-dimensional nature of the standard fabrication methods. Here, we report the facile production of three-dimensionally (3D) parallelized microfluidic droplet generators consisting of stacked and radially multiplexed channel designs. Computational fluid dynamics simulations form the design basis for a microflow distributor that ensures similar flow rates through all droplet generators. Stereolithography is... 

Quantitative Structure - Activity Relationship (QSAR) models for the inhibition action of some 1-phenylbenzimidazoles on platelet-derived growth are constructed using Genetic Algorithm and Artificial Neural Network (GA-ANN) method. The statistical parameters of R2 and root-mean-square error are 0.82 and 0.21, respectively using this method. These parameters show a considerable improvement compared to the stepwise multiple linear regression combined with ANN (stepwise MLR-ANN). Ten-fold shuffling crossvalidations are carried out to select the most important descriptors. Five descriptors of index of Balaban (J), average molecular weight (AMW), 3D-Wiener index (W3D), mean atomic van der Waals... 

In this paper, the performance of immobilized packed bed glucose isomerase enzyme was mathematically modeled. A modified Michaelis-Menten type relation was used to describe the enzyme kinetics. Mass transfer inside the biocatalyst particle and through the bed column was analyzed simultaneously. Using measured data, physicochemical properties including diffusivity, viscosity and density of sugar solutions were correlated with its concentrations and were used to provide precision in solving the set of model equations. Model equations were solved using the Runge-Kutta and Gauss-Seidel algorithms and finite difference numerical method in MATLAB environment. Model output was used to demonstrate... 

Theoretical calculations of structural parameters, 57Fe, 14N and 17O electric field gradient (EFG) tensors for full size-hemin group have been carried out using density functional theory. These calculations are intended to shed light on the difference between the geometry parameters, nuclear quadrupole coupling constants (QCC), and asymmetry parameters (ηQ) found in three spin states of hemin; doublet, quartet and sextet. The optimization results reveal a significant change for propionic groups and porphyrin plane in different spin states. It is found that all principal components of EFG tensor at the iron site are sensitive to electronic and geometry structures. A relationship between the... 

To describe immobilized cells in porous microcapsule membranes with straight pores, a novel model called corrugated parallel bundle model (CPBM) was utilized. In this model, a network was developed with 10 main pores each composing 10 pore elements. Cell growth kinetic in the network was examined using non-structural models. Effectiveness factor and pore plugging time were calculated by solving reaction-diffusion equation set via finite difference method. The findings revealed that diffusion coefficient for lower order reactions will create a lesser impact on the reduction of effectiveness factor. These findings also indicated that the use of such supporting carrier for cell immobilization... 

In this paper the two-point boundary value problem (BVP) of the cantilever deflection at nano-scale separations subjected to van der Waals and electrostatic forces is investigated using analytical and numerical methods to obtain the instability point of the beam. In the analytical treatment of the BVP, the nonlinear differential equation of the model is transformed into the integral form by using the Green's function of the cantilever beam. Then, closed-form solutions are obtained by assuming an appropriate shape function for the beam deflection to evaluate the integrals. In the numerical method, the BVP is solved with the MATLAB BVP solver, which implements a collocation method for... 

A headspace solid-phase microextraction (HS-SPME) method was developed for the trace determination of geosmin in water and apple juice samples. A poly(dimethylsiloxane) (PDMS) fiber was synthesized as coated fiber using sol-gel methodology. After performing the extraction in the headspace, the fiber was introduced directly into the injection port of a gas chromatography-mass spectrometry (GC-MS) using electron impact (EI) ionization mode. One-at-the-time optimization strategy was applied to investigate and optimize important extraction parameters such as extraction temperature and time, ionic strength, headspace volume, and desorption temperature and time. The analytical data exhibited an... 

This paper compares the Shuffling-Adaptive Neuro Fuzzy Inference System (Shuffling-ANFIS) with conventional ANFIS as the method for selecting the features of nonlinear systems. Shuffling-ANFIS technique uses the advantage of data splitting with the ANFIS as a powerful feature selection method to select the most important factors affecting nonlinear phenomena. In this technique, the features with the largest percent of frequency can be found by running the conventional ANFIS sequential forward search on the large number of training and test sets using leave-one-out validation criteria. The superiority of Shuffling-ANFIS over the conventional ANFIS was evaluated by using two synthetic and one... 

The effects of liquid environment on nucleation, growth and aggregation of gold nanoparticles were studied. Gold nanoparticles were prepared by pulsed laser ablation in deionised water with various concentrations of ethanol and also in pure ethanol. UV/visible extinction and TEM observations were employed for characterization of optical properties and particle sizes respectively. Preparation in water results in smaller size, shorter wavelength of maximum extinction and stable solution with an average size of 6 nm. Nanoparticles in solution with low concentration ethanol up to 20 vol% are very similar to those prepared in water. In the mixture of deionised water and 40 up to 80 vol% ethanol,... 

The present effort is the development of a multiscale modeling, simulation methodology for investigating complex phenomena arising from flowing fiber suspensions. Specific consideration was given to dynamic simulations of viscoelastic fibers in which the fluid flow is predicted by a method that is a hybrid between Direct Numerical Simulations (DNS) and Large Eddy Simulation techniques (LES), and fluid fibrous structure interactions (FSI) will be taken into account. Numerical results are presented for which focus is on fiber floc deformation by hydrodynamic forces in turbulent flows. Dynamics of simple fiber networks in a shearing flow of water in a channel flow illustrate that the...