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    Bottleneck of using a single memristive device as a synapse

    , Article Neurocomputing ; Volume 115 , September , 2013 , Pages 166-168 ; 09252312 (ISSN) Merrikh Bayat, F ; Bagheri Shouraki, S ; Esmaili Paeen Afrakoti, I ; Sharif University of Technology
    2013
    Abstract
    In this study we will show that the variation rate of the memristance of the memristive device depends completely on its current memristance which means that it can change significantly with time during the learning phase. This phenomenon can degrade the performance of learning methods like Spike Timing-Dependent Plasticity (STDP) and cause the corresponding neuromorphic systems to become unstable  

    Trunk muscle fatigue and its implications in EMG-assisted biomechanical modeling

    , Article International Journal of Industrial Ergonomics ; Volume 43, Issue 5 , 2013 , Pages 425-429 ; 01698141 (ISSN) Haddad, O ; Mirka, G.A ; Sharif University of Technology
    2013
    Abstract
    Muscle fatigue affects the underlying EMG-force relationship on which EMG-assisted biomechanical models rely. The aim of this study was to evaluate the impact of short duration muscle fatigue on the muscle gain value. Participants performed controlled, isometric trunk extension exertions at 10, 20, and 30 degrees of trunk flexion and controlled isokinetic trunk extension exertions at 5 and 15°/sec on five separate days. Fatigue of the lumbar extensors was generated by moderate-intensity, trunk extension exertions. Participants performed controlled test contractions at defined intervals throughout the fatiguing bout and the EMG activities of trunk muscles were collected. These EMG data were... 

    Numerical study of CO and CO2 formation in CH4/H2 blended flame under MILD condition

    , Article Combustion and Flame ; Volume 160, Issue 9 , September , 2013 , Pages 1636-1649 ; 00102180 (ISSN) Mardani, A ; Tabejamaat, S ; Hassanpour, S ; Sharif University of Technology
    2013
    Abstract
    Reduction of air pollutants formation from hydrocarbon combustion process requires improvements in combustion systems. The moderate and intense low oxygen dilution (MILD) combustion technique is an opportunity to achieve such a goal. MILD combustion is a combustion regime which can be attained by high temperature preheating and high level dilution. In this paper, the mechanism of CO and CO2 formation for a CH4/H2 fuel mixture is studied under MILD combustion condition of a jet in hot coflow (JHC) burner. This investigation is done using the computational fluid dynamics (CFD) and also zero dimensional well-stirred reactor (WSR) analysis. The RANS equations with modified k-ε equations are... 

    Improved electron transportation of dye-sensitized solar cells using uniform mixed CNTs-TiO2 photoanode prepared by a new polymeric gel process

    , Article Journal of Nanoparticle Research ; Volume 15, Issue 9 , 2013 ; 13880764 (ISSN) Bakhshayesh, A. M ; Mohammadi, M. R ; Masihi, N ; Akhlaghi, M. H ; Sharif University of Technology
    2013
    Abstract
    A new facile strategy for fabrication of high surface area electrode in the form of mixtures of coated carbon nanotubes (CNTs) and TiO2 nanoparticles with various weight ratios is reported. The so-called polymeric gel process was used to deposit thick film containing uniform distribution of TiO2 nanoparticles and coated CNTs with high porosity by dip coating for dye-sensitized solar cells (DSSCs) applications. Based on simultaneous differential thermal analysis, the minimum annealing temperature to obtain inorganic- and organic-free films was determined at 500°C. X-ray diffraction analysis revealed that deposited films were composed of primary nanoparticles with crystallite size in the range... 

    High-throughput micro-solid phase extraction on 96-well plate using dodecyl methacrylate-ethylen glycol dimethacrylate monolithic copolymer

    , Article Analytica Chimica Acta ; Volume 792 , August , 2013 , Pages 59-65 ; 00032670 (ISSN) Bagheri, H ; Es'haghi, A ; Es-haghi, A ; Mohammadkhani, E ; Sharif University of Technology
    2013
    Abstract
    A novel high-throughput device based on 96-micro-solid phase extraction (96-μ-SPE) system was constructed for multiresidue determination of nine pesticides in aquatic samples. The extraction procedure was performed on a commercially available 96-well plate system. The extraction module consisted of 96 pieces of 1cm×3cm of cylindrically shaped stainless steel meshes. The prepared meshes were fixed in a home-made polytetrafluoroethylene-based constructed ninety-six holes block for possible simultaneous immersion of meshes into the center of individual wells. Dodecyl methacrylate and ethylene glycol dimethacrylate was copolymerized as a monolithic polymer and placed in the cylindrically shaped... 

    Molecularly imprinted polydopamine nano-layer on the pore surface of porous particles for protein capture in HPLC column

    , Article Journal of Colloid and Interface Science ; Volume 404 , 2013 , Pages 117-126 ; 00219797 (ISSN) Nematollahzadeh, A ; Shojaei, A ; Abdekhodaie, M. J ; Sellergren, B ; Sharif University of Technology
    2013
    Abstract
    Bio-inspired Human Serum Albumin (HSA) imprinted polydopamine nano-layer was produced through oxidative polymerization of dopamine on the pore surface of HSA modified porous silica particles. The coating thickness was controlled by the reaction time and thereby varied within 0-12. nm. The samples were characterized by elemental analysis, FT-IR, DSC, SEM, TEM, TGA, physisorption and thermoporometry. The characterization confirmed the success of evolution and deposition of polydopamine layer on the silica pore surface. Batch rebinding experiment showed that the molecularly imprinted polymer (MIP) with 8.7. nm coating thickness, in comparison with the thinner and thicker coatings, displays the... 

    Comparison of gas phase intrinsic properties of cytosine and thymine nucleobases with their O-alkyl adducts: Different hydrogen bonding preferences for thymine versus O-alkyl thymine

    , Article Journal of Molecular Modeling ; Volume 19, Issue 8 , 2013 , Pages 2993-3005 ; 16102940 (ISSN) Aliakbar Tehrani, Z ; Fattahi, A ; Sharif University of Technology
    2013
    Abstract
    In recent years, there has been increasing interest in damaged DNA and RNA nucleobases. These damaged nucleobases can cause DNA mutation, resulting in various diseases such as cancer. Alkylating agents are mutagenic and carcinogenic in a variety of prokaryotic and eukaryotic organisms. The present study employs density functional theory (DFT/B3LYP) with the 6-311++G(d,p) basis set to investigate the effect of chemical damage in O-alkyl pyrimidines such as O4-methylthymine, O2-methylcytosine and O 2-methylthymine. We compared the intrinsic properties, such as proton affinities, gas phase acidities, equilibrium tautomerization and nucleobase pair's hydrogen bonding properties, of these... 

    Integrated one-against-one classifiers as tools for virtual screening of compound databases: A case study with CNS inhibitors

    , Article Molecular Informatics ; Volume 32, Issue 8 , 2013 , Pages 742-753 ; 18681743 (ISSN) Jalali Heravi, M ; Mani-Varnosfaderani, A ; Valadkhani, A ; Sharif University of Technology
    2013
    Abstract
    A total of 21 833 inhibitors of the central nervous system (CNS) were collected from Binding-database and analyzed using discriminant analysis (DA) techniques. A combination of genetic algorithm and quadratic discriminant analysis (GA-QDA) was proposed as a tool for the classification of molecules based on their therapeutic targets and activities. The results indicated that the one-against-one (OAO) QDA classifiers correctly separate the molecules based on their therapeutic targets and are comparable with support vector machines. These classifiers help in charting the chemical space of the CNS inhibitors and finding specific subspaces occupied by particular classes of molecules. As a next... 

    Contribution of the Middle Eastern dust source areas to PM10 levels in urban receptors: Case study of Tehran, Iran

    , Article Atmospheric Environment ; Volume 75 , 2013 , Pages 287-295 ; 13522310 (ISSN) Givehchi, R ; Arhami, M ; Tajrishy, M ; Sharif University of Technology
    2013
    Abstract
    The origins and evolution of the Middle Eastern dust storms which frequently impact the residents of this arid region were studied. A methodology was adapted and developed to identify the desert regions of potential dust sources and determine their contributions to PM10 concentrations in the highly-populated receptor city of Tehran, Iran. Initially, the episodes of regional dust intrusion and the resulting amounts of increase in the particulate concentrations during these episodes were determined using a statistical analyzing methodology. The dust episodes were also inspected with the aerosol index information from the Ozone Monitoring Instrument (OMI). The Hybrid Single-Particle Lagrangian... 

    Pemphigus vulgaris and infections: A retrospective study on 155 patients

    , Article Autoimmune Diseases ; Volume 2013 , 2013 ; 20900430 (ISSN) Esmaili, N ; Mortazavi, H ; Noormohammadpour, P ; Boreiri, M ; Soori, T ; Vasheghani Farahani, I ; Mohit, M ; Sharif University of Technology
    2013
    Abstract
    Background. Autoimmune process and immunosuppressive therapy of pemphigus vulgaris would predispose the patients to infections. Aim. We aimed to study the prevalence of infection and pathogenic agents in pemphigus vulgaris patients admitted to dermatology service. Material and methods. This retrospective study was conducted on 155 pemphigus vulgaris patients (68 males, 87 females) admitted to dermatology service between 2009 and 2011. In this study, the diagnosis of pemphigus vulgaris was confirmed by light microscopic and direct immunofluorescence findings. Data were collected through a questionnaire. Results. Of 155 pemphigus vulgaris patients, 33 had infection at admission and 9 acquired... 

    Gating and conduction of nano-channel forming proteins: A computational approach

    , Article Journal of Biomolecular Structure and Dynamics ; Volume 31, Issue 8 , 2013 , Pages 818-828 ; 07391102 (ISSN) Besya, A. B ; Mobasheri, H ; Ejtehadi, M. R ; Sharif University of Technology
    2013
    Abstract
    Monitoring conformational changes in ion channels is essential to understand their gating mechanism. Here, we explore the structural dynamics of four outer membrane proteins with different structures and functions in the slowest nonzero modes of vibration. Normal mode analysis was performed on the modified elastic network model of channel in the membrane. According to our results, when membrane proteins were analyzed in the dominant mode, the composed pores, TolC and α-hemolysin showed large motions at the intramembrane β-barrel region while, in other porins, OmpA and OmpF, largest motions observed in the region of external flexible loops. A criterion based on equipartition theorem was used... 

    Trajectory of human movement during sit to stand: A new modeling approach based on movement decomposition and multi-phase cost function

    , Article Experimental Brain Research ; Volume 229, Issue 2 , 2013 , Pages 221-234 ; 00144819 (ISSN) Sadeghi, M ; Andani, M. E ; Bahrami, F ; Parnianpour, M ; Sharif University of Technology
    2013
    Abstract
    The purpose of this work is to develop a computational model to describe the task of sit to stand (STS). STS is an important movement skill which is frequently performed in human daily activities, but has rarely been studied from the perspective of optimization principles. In this study, we compared the recorded trajectories of STS with the trajectories generated by several conventional optimization-based models (i.e., minimum torque, minimum torque change and kinetic energy cost models) and also with the trajectories produced by a novel multi-phase cost model (MPCM). In the MPCM, we suggested that any complex task, such as STS, is decomposable into successive motion phases, so that each... 

    Relative performances of artificial neural network and regression mapping tools in evaluation of spinal loads and muscle forces during static lifting

    , Article Journal of Biomechanics ; Volume 46, Issue 8 , 2013 , Pages 1454-1462 ; 00219290 (ISSN) Arjmand, N ; Ekrami, O ; Shirazi Adl, A ; Plamondon, A ; Parnianpour, M ; Sharif University of Technology
    2013
    Abstract
    Two artificial neural networks (ANNs) are constructed, trained, and tested to map inputs of a complex trunk finite element (FE) model to its outputs for spinal loads and muscle forces. Five input variables (thorax flexion angle, load magnitude, its anterior and lateral positions, load handling technique, i.e., one- or two-handed static lifting) and four model outputs (L4-L5 and L5-S1 disc compression and anterior-posterior shear forces) for spinal loads and 76 model outputs (forces in individual trunk muscles) are considered. Moreover, full quadratic regression equations mapping input-outputs of the model developed here for muscle forces and previously for spine loads are used to compare the... 

    Thorough tuning of the aspect ratio of gold nanorods using response surface methodology

    , Article Analytica Chimica Acta ; Volume 779 , 2013 , Pages 14-21 ; 00032670 (ISSN) Hormozi Nezhad, M. R ; Robatjazi, H ; Jalali Heravi, M ; Sharif University of Technology
    2013
    Abstract
    In the present work a central composite design based on response surface methodology (RSM) is employed for fine tuning of the aspect ratios of seed-mediated synthesized gold nanorods (GNRs). The relations between the affecting parameters, including ratio of l-ascorbic acid to Au3+ ions, concentrations of silver nitrate, CTAB, and CTAB-capped gold seeds, were explored using a RSM model. It is observed that the effect of each parameter on the aspect ratio of developing nanorods highly depends on the value of the other parameters. The concentrations of silver ions, ascorbic acid and seeds are found to have a high contribution in controlling the aspect ratios of NRs. The optimized parameters led... 

    Permeability reduction of membranes during particulate suspension flow; analytical micro model of size exclusion mechanism

    , Article Journal of Membrane Science ; Volume 435 , 2013 , Pages 155-164 ; 03767388 (ISSN) Bashtani, F ; Ayatollahi, S ; Habibi, A ; Masihi, M ; Sharif University of Technology
    2013
    Abstract
    Particle capture at porous media in cross-flow microfiltration is studied to investigate permeability reduction as a function of membrane pore size and particle size distribution. A new model in pore scale and its pertinent mathematical expressions, which consider pore and particle size distribution, are provided. Permeability reduction of the membrane because of size exclusion during particulate suspension flow was predicted using the developed model. It is assumed that the size exclusion is the dominant mechanism of particle retention causes pore blocking and permeability reduction in the porous media.The exact analytical solution of the stochastic model for size exclusion is used to... 

    Multivariate curve resolution-particle swarm optimization: A high-throughput approach to exploit pure information from multi-component hyphenated chromatographic signals

    , Article Analytica Chimica Acta ; Volume 772 , 2013 , Pages 16-25 ; 00032670 (ISSN) Parastar, H ; Ebrahimi Najafabadi, H ; Jalali Heravi, M ; Sharif University of Technology
    2013
    Abstract
    Multivariate curve resolution-particle swarm optimization (MCR-PSO) algorithm is proposed to exploit pure chromatographic and spectroscopic information from multi-component hyphenated chromatographic signals. This new MCR method is based on rotation of mathematically unique PCA solutions into the chemically meaningful MCR solutions. To obtain a proper rotation matrix, an objective function based on non-fulfillment of constraints is defined and is optimized using particle swarm optimization (PSO) algorithm. Initial values of rotation matrix are calculated using local rank analysis and heuristic evolving latent projection (HELP) method. The ability of MCR-PSO in resolving the chromatographic... 

    Physiological temperature has a crucial role in amyloid beta in the absence and presence of hydrophobic and hydrophilic nanoparticles

    , Article ACS Chemical Neuroscience ; Volume 4, Issue 3 , December , 2013 , Pages 375-378 ; 19487193 (ISSN) Ghavami, M ; Rezaei, M ; Ejtehadi, R ; Lotfi, M ; Shokrgozar, M. A ; Abd Emamy, B ; Raush, J ; Mahmoudi, M ; Sharif University of Technology
    2013
    Abstract
    Amyloid beta fibrillation can lead to major disorder of neurons processes and is associated with several neuronal diseases (e.g., Alzheimer's disease). We report here an importance of slight temperature changes, in the physiological range (35-42 °C), on the amyloid fibrillation process in the presence and absence of hydrophilic (silica) and hydrophobic (polystyrene) nanoparticles (NPs). The results highlight the fact that slight increases in temperature can induce inhibitory and acceleratory effects of hydrophobic and hydrophilic NPs on the fibrillation process, respectively. Using further in vivo considerations, the outcomes of this study can be used for considerable modifications on the... 

    Conductive polymer-based microextraction methods: A review

    , Article Analytica Chimica Acta ; Volume 767, Issue 1 , March , 2013 , Pages 1-13 ; 00032670 (ISSN) Bagheri, H ; Ayazi, Z ; Naderi, M ; Sharif University of Technology
    2013
    Abstract
    Conductive polymers (CPs) are classified as materials which exhibit highly reversible redox behavior and the unusual combined properties of metal and plastics. CPs, due to their multifunctionality, ease of synthesis and their stability, have attracted more attentions in different fields of research, including sample preparation. CPs along with several commercial hydrophilic sorbents, are alternative to the commercially available hydrophobic sorbents which despite their high specific surface areas, have poor interactions and retentions in the extraction of polar compounds. This review covers a general overview regarding the recent progress and new applications of CPs toward their synthesis... 

    Synthesis of pseudopolyrotaxanes-coated superparamagnetic Iron oxide nanoparticles as new MRI contrast agent

    , Article Colloids and Surfaces B: Biointerfaces ; Volume 103 , March , 2013 , Pages 652-657 ; 09277765 (ISSN) Hosseini, F ; Panahifar, A ; Adeli, M ; Amiri, H ; Lascialfari, A ; Orsini, F ; Doschak, M. R ; Mahmoudi, M ; Sharif University of Technology
    2013
    Abstract
    Superparamagnetic Iron Oxide Nanoparticles (SPIONs) were synthesized and coated with pseudopolyrotaxanes (PPRs) and proposed as a novel hybrid nanostructure for medical imaging and drug delivery. PPRs were prepared by addition of α-cyclodextrin rings to functionalized polyethylene glycol (PEG) chain with hydrophobic triazine end-groups. Non-covalent interactions between SPIONs and PPRs led to the assembly of SPIONs@PRs hybrid nanomaterials. Measurements of the 1H Nuclear Magnetic Resonance (NMR) relaxation times T1 and T2 allowed us to determine the NMR dispersion profiles. Comparison between our SPIONs@PRs hybrid nano-compound and the commercial SPION compound, Endorem®, showed a higher... 

    On the induced airflow and particle resuspension due to a falling disk

    , Article Particulate Science and Technology ; Volume 31, Issue 2 , Jun , 2013 , Pages 190-198 ; 02726351 (ISSN) Sajadi, B ; Saidi, M. H ; Ahmadi, G ; Kenney, S. M ; Taylor, J ; Sharif University of Technology
    2013
    Abstract
    In this article, the induced airflow and the resultant particles resuspension due to a disk falling freely under the effect of gravity is studied using numerical and experimental approaches. The results showed that an axisymmetric vortex is generated on the disk tip as the disk falls and sheds after impacting the floor. While the effect of this ring vortex on the particles detachment from the floor is small, it has considerable influence on the dispersion of resuspended particles. The simulation results indicated that particles are mainly resuspended from an annular area beneath the disk tip where the generated wall shear is sufficiently high. As particles detachment is mainly controlled by...