Sharif Digital Repository

Predicting the Amino Acids that have a catalytic effect in the enzymes, is a big step in appointing the activity of the enzymes and classifying them. This is a very challenging job, because an Amino Acid can appear in a variety of active sites.The biological activity of a protein usually depends on the existence of a small number of Amino Acids. Detecting these Amino Acids from the sequence of Amino Acids has many applications. Usually, the Amino Acids that are preserved are known as the Amino Acids that build up the active site, but the algorithms for finding the preserved Amino Acids are much more complex. There are a lot of algorithms for predicting the active sites of Amino Acids, but... 

Think of an Alpine hiker who because of avalanche and a blinding blizzard, is stranded on a desolate, mountain path facing a chasm. The hiker cannot return the way he came because of the avalanche, yet, if he stays where he is, he will freeze as the temperature plummets. The hiker’s only real hope is to jump the chasm. Knowing that exertion generally follows belief, the hiker realizes that his attempt will be half-hearted, diminishing his chance of survival, unless he brings himself to the belief that he can make the jump. In circumstances like these, one is clearly justified both in forming beliefs motivated by pragmatic reasons, and in suppressing beliefs (I cannot make the jump) motivated... 

The thesis at hand provides a comparative study of Kantian and Fichtean ethics. In the course of this study, the ethical theory of these philosophers will be analyzed through three stages of “Foundation of Ethics,” “System of Ethics,” and “Application of Ethics”: Foundation of Ethics seeks out human will as the sole possible ground for ethical theory of both Kant and Fichte; System of Ethics follows the endeavors of the two thinkers in deducing concept of ethics from this sole ground; and lastly, Application of Ethics introduces the ethical thoughts resulting from a Fichtean account of ethics. This thesis is mostly based upon studies of Allen W. Wood of the ethical thoughts of Kant and... 

Slosh phenomenon is described as the motion of the fluid’s free surface in a tank or partially-filled container. This motion can induce undesired forces that can change the path of a vehicle. In some liquid carrying vehicles these undesired changes is sensed by the driver or control system and can lead to instability. Some examples of this phenomenon are aircrafts, rockets, ships and fuel carrier trucks.
In this project, a coupling between the dynamics of the vehicle and the contained fluid is implemented for in depth understanding of the interactions. This is done by Co-Simulation. With the help of Co-Simulation, corrective control actions can be taken and the design of more powerful... 

In this thesis a smart anticorrosive pH-responsive coat was developed with layer by layer (LbL) technique in the assembly of SiO2/CTAB/PSS/HMTA/PSS/PEI/PSS. SiO2 nanoparticles were prepared from Matland Company (Iran) with average size of 24 nm. At first, the corrosion inhibition of HMTA for API 5L Grade B steel in 3.5 wt.% NaCl solution was investigated. Tafel polarization technique showed the optimum concentration of HMTA was 0.08 M with 92% corrosion inhibition efficiency as the morphology of coverage and adsorption on the steel surface was confirmed by SEM and EDS. AFM results showed the roughness of the surface decreased from 241 nm to 56 nm that is attributed to HMTA adsorption on the... 

In recent years, sparse representation has had a variety of applications in computer vision such as noise reduction, image reconstruction, classification and dimension reduction. In this project, we aim to provide a method of matching the keypoints obtained from the Scale Invariant feature Transform (SIFT) algorithm. In this algorithm is used descriptor instead of intensity . The proposed method, first, extracts the salient points from the images and learns a dictionary-based descriptors corresponding to the points. Then, using the dictionary, it obtains the sparse coefficients for each salient point by which, it determines the correspondence of the salient points in the two images using SVD... 

In recent decades, we have faced the enormous growth of data and graph volumes. This requires modern ways of computation and storage systems and algorithms. MapReduce is a known way of processing Big Data in a Parallel and primarily Distributed setting. Theoretical models (e.g., Massively Parallel Computation) for Algorithms using this paradigm commonly evaluate the number of rounds and needed communication. We study the Minimum Spanning Tree (MST) as a fundamental graph problem. This problem in MapReduce is harder for sparse graphs. We introduce an algorithm that performs well comparing previous studies, especially for sparse graphs.We present an empirical study by implementing some... 

In the current situation, kidney transplantation is the most appropriate and least costly treatment for patients with end-stage renal disease (ESRD). Related or altruistic living donors, as well as deceased donors, are considered as a supply source for donated kidneys. Researches have shown deceased donor kidney may not work as well as a living donor kidney because the deceased donor kidney is outside the donor's body for a longer time. If the donor has an incompatibility with the patient (in terms of the blood group, HLA, etc.), a kidney exchange between the pairs can be used to resolve the issue and make the transplantation possible. Pairs with blood group compatibility have also... 

Cognitive radio (CR) can successfully deal with the growing demand and scarcity of the wireless spectrum. To exploit limited spectrum efficiently, CR technology allows unlicensed users to access licensed spectrum bands. Since licensed users have priorities to use the bands, the unlicensed users need to continuously monitor the licensed users activities to avoid interference and collisions. How to obtain reliable results of the licensed users activities is the main task for spectrum sensing. Based on the sensing results, the unlicensed users should adapt their transmit powers and access strategies to protect the licensed communications. The requirement naturally presents challenges to the... 

Despite of significant developments of optical trapping in past decays, trapping of small nanometer-sized particle faces some difficulties. Optical force reduces rapidly by decreasing the size of the particle because of reducing the particle’s polarizability. So, it is necessary to increase the intensity of incident beam to attain a stable trap. However, it can lead to damage of particle before getting trapped. Self induced back-action(SIBA) is one of the proposed solutions to overcome this problem. In this phenomena particle plays an active role in trapping by changing the surrounding electromagnetics field. In this thesis, we show that SIBA is a phenomenon that appears when we extend the... 

Taking into account the fast and ever-increasing pace of data growth, clustering algorithms emerge as the key tools for data analysis in new researches. Clustering remain as a method for decomposing data into clusters, in such a way that similar data coalesce in the same group. Different algorithms conduct clustering according to a series of initial hypotheses, without being informed about the clusters’ form and aims. Hence, in case with no conformity between initial hypothesis and the clustering aim, one cannot expect adequate response from the clustering algorithm. Exploitation of side information in clustering can play an impactful role in introduction of real models into clustering... 

Considering the limited number of works on investigation of solidification characteristics of Al-Zn-Mg-Cu cast alloys as well as the applications of this alloy system in aerospace industries, the solidification conditions of Al 713 alloy were investigated in this study. In order to achieve this goal, a number of experiments were designed and conducted including quantometry, thermal analysis, metallography and hardness measurements. In this thesis, effects of cooling rate on secondary dendritic arms spacing as well as solidification parameters including nucleation temperature, solidification time and temperature range, dendrite coherency point and formation temperature of intermetallic... 

Large-size buried pipelines are an efficient way of transporting of water, waste water, sewage, gas, and oil resources in across the world. Since the buried pipe lines are exposed to many unexpected conditions, such as landslides, corrosion, fatigue, unexpected loading, earthquakes, material flaws or even intentional damaging, so the inspection requirements lead to adoption of new method of maintenance, protection and conserving of pipelines. This proposed project aims to improve the trustworthiness, reliable, yet economical technologies for monitoring of behavior of buried pipe lines during operation and assessing the risk of pipe lines failure. Piezoelectric sensor is bonded on the surface... 

The search for an empirically proven quantum theory of gravity is one of the greatest open problems of fundamental physics. Obstacles are formal and conceptual in nature. Our goal is to find a theory that somehow unites general relativity (Einstein's classical field gravity theory) and quantum field theory. In this research work, the problem of quantum gravity and the reason for its importance are investigated, as well as the proposed solutions; and what philosophical issues do these approaches and the issue itself create. Research has been carefully selected to remain managed in terms of size and content, however, some basic formalism is introduced to enter physics and the philosophy of... 

Because of increasing usage of modified polymers and consequent necessity for investigation and modeling of mechanical behavior of these materials, it is important to get a yield criterion for these materials. For this purpose the Gurson yield criterion presented for porous metals, was modified with regard to mechanical properties of polymers. Indeed pressure sensitivity of polymers and their large elastic strain during deformation, makes using of Gurson yield criterion problematic for modified polymers.
For modification of Gurson criterion, macroscopic hydrostatic yield stress equation was derived for a thick-walled spherical shell of epoxy and then Gurson criterion was modified with... 

Hyperbolic branching Brownian motion is a branching diffusion process in which individual particles follow independent Brownian paths in the hyperbolic plane H2, and undergo binary fission(s) at rate λ > 0. It is shown that there is a phase transition in λ : For λ ≤ 1/8 the number
of particles in any compact region of H2 is eventually 0, w.p.1, but for λ > 1/8 the number of particles in any open set grows to ∞ w.p.1. In the subcritical case (λ ≤ 1/8) the set Λ of all limit points in ∂H2 (the boundary circle at ∞) of particle trails is a Cantor set, while in the supercritical case (λ > 1/8) the set Λ has full Lebesgue measure. For λ ≤ 1/8 it is shown that w.p.1 the Hausdorff dimension of Λ... 

Spray-wall impingement is one of the phenomenon that associated in different subject such as spray cooling, combustion chamber and gas turbine. With the impingement of spray to the wall, liquid film begins to form. Wall film characteristics is still an important subject to study. Due to the various stages of liquid film formation from injection of spray till spray-wall impingement, the investigation of this phenomenon is far more complicated. This paper is meant to provide detailed data on spray-wall impingement and wall film formation physics with the help of computational analysis of OpenFOAM . A Lagrangian-Eulerian method based on discrete phase model (DPM) was employed to model... 

Pump and treat is one of the oldest and mostly used methods in remediation of groundwater. Although this method has been criticized recently, it is still widely be used. The systems typically use one or more extraction and injection wells to hydraulically control the contamination plume. The purpose of studying a pump and treat system is to determine the appropriate location and discharge for the wells in the way that the contamination could be pumped out. In this study after reviewing some existing solutions for delineation the capture zone of single well a method to delineate the capture zone for arbitrary located wells is presented. This method can delineate a three dimensional capture...