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TAMER: an adaptive task allocation method for aging reduction in multi-core embedded real-time systems
, Article Journal of Supercomputing ; 2020 ; Rohbani, N ; Baharvand, F ; Farbeh, H ; Sharif University of Technology
Springer
2020
Abstract
Technology scaling has exacerbated the aging impact on the performance and reliability of integrated circuits. By entering into nanotechnology era in recent years, the power density per unit of area has increased, which leads to a higher chip temperature. Aging in a chip is originated from multiple phenomena; all of them are intensified by increased temperature. Several circuit- and architecture-level schemes tried to mitigate the aging in the literature. However, these schemes are not sufficient for multi-core systems due to their unawareness of the unique constraints and features of these platforms. In this paper, we propose a system-level aging mitigation method, so-called Adaptive Task...
TAMER: an adaptive task allocation method for aging reduction in multi-core embedded real-time systems
, Article Journal of Supercomputing ; Volume 77, Issue 2 , 2021 , Pages 1939-1957 ; 09208542 (ISSN) ; Rohbani, N ; Baharvand, F ; Farbeh, H ; Sharif University of Technology
Springer
2021
Abstract
Technology scaling has exacerbated the aging impact on the performance and reliability of integrated circuits. By entering into nanotechnology era in recent years, the power density per unit of area has increased, which leads to a higher chip temperature. Aging in a chip is originated from multiple phenomena; all of them are intensified by increased temperature. Several circuit- and architecture-level schemes tried to mitigate the aging in the literature. However, these schemes are not sufficient for multi-core systems due to their unawareness of the unique constraints and features of these platforms. In this paper, we propose a system-level aging mitigation method, so-called Adaptive Task...
ANMR: aging-aware adaptive N-modular redundancy for homogeneous multicore embedded processors
, Article Journal of Parallel and Distributed Computing ; Volume 109 , 2017 , Pages 29-41 ; 07437315 (ISSN) ; Miremadi, S. G ; Sharif University of Technology
2017
Abstract
Advances in semiconductor technology have made integration of multiple processing cores into one single die a promising trend towards increasing processing performance, lowering power consumption, and increasing reliability for embedded systems. Multicore processors, due to their intrinsic redundancies, are good choices for critical embedded systems for which the reliability is a crucial component. In this paper, an aging-aware adaptive fault tolerance method for DVFS-enabled multicore processors is presented. The analytical results show 3 to 6 order of magnitude increase in reliability of the system without addition of cores or redundant software. By using an aging-aware approach, the...
LEXACT: low energy n-modular redundancy using approximate computing for real-time multicore processors
, Article IEEE Transactions on Emerging Topics in Computing ; 2017 ; 21686750 (ISSN) ; Ghassem Miremadi, S ; Sharif University of Technology
2017
Abstract
Multicore processors are becoming popular in safety-critical applications. A series of these applications comprises of kernels where inexact computations may produce results within the boundary of sufficient quality though, for which the reliability should stay at the maximum possible level. Intrinsic core-level redundancy in multicore processors can be leveraged to achieve the desired reliability level in form of N-modular redundancy (NMR). While NMR provides a proactive means of reliability for critical systems, it has two main drawbacks: Increase in the area and energy consumption that are both limiting factors in the embedded systems. This paper presents a software-based method to...
LEXACT: low energy n-modular redundancy using approximate computing for real-time multicore processors
, Article IEEE Transactions on Emerging Topics in Computing ; Volume 8, Issue 2 , 2020 , Pages 431-441 ; Miremadi, S. G ; Sharif University of Technology
IEEE Computer Society
2020
Abstract
Multicore processors are becoming popular in safety-critical applications. A series of these applications comprises of kernels where inexact computations may produce results within the boundary of sufficient quality though, for which the reliability should stay at the maximum possible level. Intrinsic core-level redundancy in multicore processors can be leveraged to achieve the desired reliability level in form of N-modular redundancy (NMR). While NMR provides a proactive means of reliability for critical systems, it has two main drawbacks: Increase in the area and energy consumption that are both limiting factors in the embedded systems. This paper presents a software-based method to...
Study Optimum Conditions and Proper Packaging of Amylase
, M.Sc. Thesis Sharif University of Technology ; Roosta Azad, Reza (Supervisor)
Abstract
In the world today, biological materials widely used are which requires proper packaging, the types of enzymes are used in various industries: food, pharmaceutical, cosmetics. Shelf Life of enzymes Limited and affected by internal and external factors a maximum of one year. Internal factors include water activity, pH, microbial flora, oxidation-reduction potential, chemistry and biochemistry products, product formulation, additives and the reaction with package. External factors such as relative humidity, light, gas atmosphere within the package, the storage conditions and temperature. Water activity and relative humidity are important factors in spoilage. Avoid drying, lipid reaction,...
Alumina feeding system changes in aluminum electrochemical cell with d18 technology for energy efficiency (Case study: Almahdi-hormozal aluminum smelter)
, Article 147th Annual Meeting and Exhibition of the Minerals, Metals and Materials Society, TMS 2018, 11 March 2018 through 15 March 2018 ; Volume Part F12 , 2018 , Pages 721-728 ; 23671181 (ISSN); 9783319725253 (ISBN) ; Samimi, A ; Baharvand, B ; Sharif University of Technology
Springer International Publishing
2018
Abstract
Aluminum reduction cells have benefited from point feeding technology for a long time, but there are still smelters which are using the old technology of center break and center feed system. Due to several factors this system is no longer approved and there have been a few attempts worldwide to upgrade these cells so as to implement the newer technology by applying mechanical and automation changes. In this paper we will present an attempt which was made in order to retrofit a so-called center break cell to point feeder cell. The results show that this project has decreased the energy consumption and anode effect frequency. Furthermore, there has been a significant increase in current...
Pan-cancer analysis of microRNA expression profiles highlights microRNAs enriched in normal body cells as effective suppressors of multiple tumor types: A study based on TCGA database
, Article PLoS ONE ; Volume 17, Issue 4 April , 2022 ; 19326203 (ISSN) ; Kamal, A ; Es, H. A ; Farhadi, F ; Ebrahimi, M ; Chitsaz, H ; Sharifi Zarchi, A ; Baharvand, H ; Sharif University of Technology
Public Library of Science
2022
Abstract
Background MicroRNAs (miRNAs) are frequently deregulated in various types of cancer. While antisense oligonucleotides are used to block oncomiRs, delivery of tumour-suppressive miRNAs holds great potential as a potent anti-cancer strategy. Here, we aim to determine, and functionally analyse, miRNAs that are lowly expressed in various types of tumour but abundantly expressed in multiple normal tissues. Methods The miRNA sequencing data of 14 cancer types were downloaded from the TCGA dataset. Significant differences in miRNA expression between tumor and normal samples were calculated using limma package (R programming). An adjusted p value < 0.05 was used to compare normal versus tumor miRNA...
Gene Selection and Reduction in DNA Microarrays to Improve Classification Accuracy of Cancerous Samples
, M.Sc. Thesis Sharif University of Technology ; Rabiee, Hamid Reza (Supervisor)
Abstract
DNA Microarray is the state-of-the-art technology in analyzing gene expression data. It has made it possible to measure expression levels of thousand of genes simultaneously. Microarray classification has been widely used in effective diagnosis of cancers and some other biological diseases. But the most challenging issue is the intense asymmetry between the dimensionality of genes and tissue samples which can wreck the classification performance. This dissertation will focus on gene selection and reduction solutions and presents a novel classification scheme which uses both gene selection and dimension reduction in its different stages. We have improved one of the recently proposed topology...
Controlled differentiation of human neural progenitor cells on molybdenum disulfide/graphene oxide heterojunction scaffolds by photostimulation
, Article ACS Applied Materials and Interfaces ; Volume 15, Issue 3 , 2023 , Pages 3713-3730 ; 19448244 (ISSN) ; Akhavan, O ; Fazli, H ; Nemati, S ; Baharvand, H ; Sharif University of Technology
American Chemical Society
2023
Abstract
Ultrathin MoS2-MoO3-x heterojunction nanosheets with unique features were introduced as biocompatible, non-cytotoxic, and visible light-sensitive stimulator layers for the controlled differentiation of human neural progenitor cells (hNPCs) into nervous lineages. hNPC differentiation was also investigated on reduced graphene oxide (rGO)-containing scaffolds, that is, rGO and rGO/MoS2-MoO3-x nanosheets. In darkness, hNPC differentiation into neurons increased on MoS2-MoO3-x by a factor of 2.7 due to the excellent biophysical cues and further increased on rGO/MoS2-MoO3-x by a factor of 4.4 due to a synergistic effect induced by the rGO. The MoO3-x domains with antioxidant activity and LSPR...
Mechanical reinforcement of urinary bladder matrix by electrospun polycaprolactone nanofibers
, Article Scientia Iranica ; Volume 24, Issue 6 , 2017 , Pages 3476-3480 ; 10263098 (ISSN) ; Rajabi Zeleti, S ; Naji, M ; Ghanian, M. H ; Baharvand, H ; Sharif University of Technology
2017
Abstract
For a successful repair and reconstruction of bladder tissue, fabrication of scaffolds with proper biochemical and biomechanical characteristics is necessary. Decellularized bladder tissue has been proposed in previous studies as a gold standard material for scaffold fabrication. However, weak mechanical properties of such a load-bearing tissue has remained a challenge. Incorporation of both biological and synthetic materials has been known as an effective strategy for improving mechanical and biological properties of the scaffolds. In the present work, a simple process was developed to fabricate hybrid hydrogel scaffolds with a biomimetic architecture from the natural urinary bladder...
Multifunctional conductive biomaterials as promising platforms for cardiac tissue engineering
, Article ACS Biomaterials Science and Engineering ; Volume 7, Issue 1 , 2021 , Pages 55-82 ; 23739878 (ISSN) ; Vahdat, S ; Baheiraei, N ; Razavi, M ; Norahan, M. H ; Baharvand, H ; Sharif University of Technology
American Chemical Society
2021
Abstract
Adult cardiomyocytes are terminally differentiated cells that result in minimal intrinsic potential for the heart to self-regenerate. The introduction of novel approaches in cardiac tissue engineering aims to repair damages from cardiovascular diseases. Recently, conductive biomaterials such as carbon- and gold-based nanomaterials, conductive polymers, and ceramics that have outstanding electrical conductivity, acceptable mechanical properties, and promoted cell-cell signaling transduction have attracted attention for use in cardiac tissue engineering. Nevertheless, comprehensive classification of conductive biomaterials from the perspective of cardiac cell function is a subject for...
Smart liposomal drug delivery for treatment of oxidative stress model in human embryonic stem cell-derived retinal pigment epithelial cells
, Article International Journal of Pharmaceutics ; Volume 548, Issue 1 , 2018 , Pages 62-72 ; 03785173 (ISSN) ; Abdkhodaie, M. J ; Sadeghi Abandansari, H ; Satarian, L ; Kazemi Ashtiani, M ; Jaafari, M. R ; Baharvand, H ; Sharif University of Technology
2018
Abstract
Oxidative stress has been implicated in the progression of age-related macular degeneration (AMD). Treatment with antioxidants seems to delay progression of AMD. In this study, we suggested an antioxidant delivery system based on redox-sensitive liposome composed of phospholipids and a diselenide centered alkyl chain. Dynamic light scattering assessment indicated that the liposomes had an average size of 140 nm with a polydispersity index below 0.2. The percentage of encapsulation efficiency of the liposomes was calculated by high-performance liquid chromatography. The carriers were loaded with N-acetyl cysteine as a model antioxidant drug. We demonstrated responsiveness of the nanocarrier...
Engineering folate-targeting diselenide-containing triblock copolymer as a redox-responsive shell-sheddable micelle for antitumor therapy in vivo
, Article Acta Biomaterialia ; Volume 76 , 2018 , Pages 239-256 ; 17427061 (ISSN) ; Abdkhodaie, M. J ; Sadeghi Abandansari, H ; Satarian, L ; Molazem, M ; Al Jamal, K. T ; Baharvand, H ; Sharif University of Technology
Acta Materialia Inc
2018
Abstract
The oxidation-reduction (redox)–responsive micelle system is based on a diselenide-containing triblock copolymer, poly(ε-caprolactone)-bis(diselenide-methoxy poly(ethylene glycol)/poly(ethylene glycol)-folate) [PCL-(SeSe-mPEG/PEG-FA)2]. This has helped in the development of tumor-targeted delivery for hydrophobic anticancer drugs. The diselenide bond, as a redox-sensitive linkage, was designed in such a manner that it is located at the hydrophilic–hydrophobic hinge to allow complete collapse of the micelle and thus efficient drug release in redox environments. The amphiphilic block copolymers self-assembled into micelles at concentrations higher than the critical micelle concentration (CMC)...
Design of Oxidative Stress Nanoparticles for Targeted drug Delivery to the Posterior Segment of the Eye and Breast Cancer
, Ph.D. Dissertation Sharif University of Technology ; Abdekhodaei, Mohammad Jafar (Supervisor) ; Baharvand, Hossein (Supervisor) ; Satarian, Leila ($item.subfieldsMap.e) ; Sadeghi, Hamid ($item.subfieldsMap.e)
Abstract
The oxidation-reduction (redox) responsive micelle system is based on a diselenide-containing triblock copolymer, poly(ε-caprolactone)-bis(diselenide-methoxy poly(ethylene glycol)/poly(ethylene glycol)-folate) [PCL-(SeSe-mPEG/PEG-FA)2]. Resulting in the development of tumor-targeted delivery for hydrophobic anticancer drugs. The diselenide bond, as redox-sensitive linkage, was designed, so it is located at the hydrophilic/hydrophobic hinge to allow complete micelles collapse and efficient drug release, in redox environments. The amphiphilic block copolymers self-assembled into micelles at concentrations above the critical micelle concentration (CMC) in an aqueous environment. Dynamic light...
Combinational therapy of lithium and human neural stem cells in rat spinal cord contusion model
, Article Journal of Cellular Physiology ; Volume 234, Issue 11 , 2019 , Pages 20742-20754 ; 00219541 (ISSN) ; Sadrosadat, H ; Jaberi, R ; Zareikheirabadi, M ; Mirsadeghi, S ; Naghdabadi, Z ; Ghaneezabadi, M ; Fardmanesh, M ; Baharvand, H ; Kiani, S ; Sharif University of Technology
Wiley-Liss Inc
2019
Abstract
A large number of treatment approaches have been used for spinal cord injury improvement, a medically incurable disorder, and subsequently stem cell transplantation appears to be a promising strategy. The main objective of this study is to ascertain whether combinational therapy of human neural stem cells (hNSCs) together with lithium chloride improves cell survival, proliferation, and differentiation in a rat spinal contusion model, or not. Contusive spinal cord injury was implemented on Wistar male rats. Experimental groups comprised of: control, hNSCs transplanted, lithium chloride (Li), and hNSCs and lithium chloride (hNSCs + Li). In every experimental group, locomotor activity score and...
Time-resolved small-RNA sequencing identifies micrornas critical for formation of embryonic stem cells from the inner cell mass of mouse embryos
, Article Stem Cell Reviews and Reports ; Volume 19, Issue 7 , 2023 , Pages 2361-2377 ; 26293269 (ISSN) ; Guenther, S ; Soori, S ; Sharifi Zarchi, A ; Kuenne, C ; Khoddami, V ; Tavakol, P ; Kreutzer, S ; Braun, T ; Baharvand, H ; Sharif University of Technology
Springer
2023
Abstract
Abstract: Cells of the inner cell mass (ICM) acquire a unique ability for unlimited self-renewal during transition into embryonic stem cells (ESCs) in vitro, while preserving their natural multi-lineage differentiation potential. Several different pathways have been identified to play roles in ESC formation but the function of non-coding RNAs in this process is poorly understood. Here, we describe several microRNAs (miRNAs) that are crucial for efficient generation of mouse ESCs from ICMs. Using small-RNA sequencing, we characterize dynamic changes in miRNA expression profiles during outgrowth of ICMs in a high-resolution, time-course dependent manner. We report several waves of...
Small RNA sequencing reveals dlk1-dio3 locus-embedded microRNAs as major drivers of ground-state pluripotency
, Article Stem Cell Reports ; Volume 9, Issue 6 , 2017 , Pages 2081-2096 ; 22136711 (ISSN) ; Sharifi Zarchi, A ; Ahmadi, A ; Mollamohammadi, S ; Stubenvoll, A ; Günther, S ; Hosseini Salekdeh, G ; Asgari, S ; Braun, T ; Baharvand, H ; Sharif University of Technology
2017
Abstract
Ground-state pluripotency is a cell state in which pluripotency is established and maintained through efficient repression of endogenous differentiation pathways. Self-renewal and pluripotency of embryonic stem cells (ESCs) are influenced by ESC-associated microRNAs (miRNAs). Here, we provide a comprehensive assessment of the “miRNome” of ESCs cultured under conditions favoring ground-state pluripotency. We found that ground-state ESCs express a distinct set of miRNAs compared with ESCs grown in serum. Interestingly, most “ground-state miRNAs” are encoded by an imprinted region on chromosome 12 within the Dlk1-Dio3 locus. Functional analysis revealed that ground-state miRNAs embedded in the...
MicroRNA profiling reveals important functions of miR-125b and let-7a during human retinal pigment epithelial cell differentiation
, Article Experimental Eye Research ; Volume 190 , 2020 ; Satarian, L ; Moradi, S ; Sharifi Zarchi, A ; Günther, S ; Kamal, A ; Totonchi, M ; Mowla, S. J ; Braun, T ; Baharvand, H ; Sharif University of Technology
Academic Press
2020
Abstract
Retinal pigment epithelial (RPE) cells are indispensable for eye organogenesis and vision. To realize the therapeutic potential of in vitro-generated RPE cells for cell-replacement therapy of RPE-related retinopathies, molecular mechanisms of RPE specification and maturation need to be investigated. So far, many attempts have been made to decipher the regulatory networks involved in the differentiation of human pluripotent stem cells into RPE cells. Here, we exploited a highly-efficient RPE differentiation protocol to determine global expression patterns of microRNAs (miRNAs) during human embryonic stem cell (hESC) differentiation into RPE using small RNA sequencing. Our results revealed a...
CRISPRi-mediated knock-down of PRDM1/BLIMP1 programs central memory differentiation in ex vivo-expanded human T cells
, Article BioImpacts ; Volume 12, Issue 4 , 2022 , Pages 337-347 ; 22285652 (ISSN) ; Sayadmanesh, A ; Nazer, N ; Ahmadi, A ; Hemmati, S ; Mohammadzade, H ; Ebrahimi, M ; Baharvand, H ; Khalaj, B ; Aghamaali, M. R ; Basiri, M ; Sharif University of Technology
Tabriz University of Medical Sciences
2022
Abstract
Introduction: B lymphocyte-induced maturation protein 1 (BLIMP1) encoded by the positive regulatory domain 1 gene (PRDM1), is a key regulator in T cell differentiation in mouse models. BLIMP1-deficiency results in a lower effector phenotype and a higher memory phenotype. Methods: In this study, we aimed to determine the role of transcription factor BLIMP1 in human T cell differentiation. Specifically, we investigated the role of BLIMP1 in memory differentiation and exhaustion of human T cells. We used CRISPR interference (CRISPRi) to knock-down BLIMP1 and investigated the differential expressions of T cell memory and exhaustion markers in BLIMP1-deficient T cells in comparison with...