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    Architecting the last-level cache for GPUs using STT-RAM technology

    , Article Transactions on Design Automation of Electronic Systems ; Volume 20, Issue 4 , 2015 ; 10844309 (ISSN) Samavatian, M. H ; Arjomand, M ; Bashizade, R ; Sarbazi Azad, H ; Sharif University of Technology
    2015
    Abstract
    Future GPUs should have larger L2 caches based on the current trends in VLSI technology and GPU architectures toward increase of processing core count. Larger L2 caches inevitably have proportionally larger power consumption. In this article, having investigated the behavior of GPGPU applications, we present an efficient L2 cache architecture for GPUs based on STT-RAM technology. Due to its high-density and low-power characteristics, STT-RAM technology can be utilized in GPUs where numerous cores leave a limited area for on-chip memory banks. They have, however, two important issues, high energy and latency of write operations, that have to be addressed. Low retention time STT-RAMs can... 

    Efficient mapping of applications for future chip-multiprocessors in dark silicon era

    , Article ACM Transactions on Design Automation of Electronic Systems ; Volume 22, Issue 4 , 2017 ; 10844309 (ISSN) Hoveida, M ; Aghaaliakbari, F ; Bashizade, R ; Arjomand, M ; Sarbazi Azad, H ; Sharif University of Technology
    2017
    Abstract
    The failure of Dennard scaling has led to the utilization wall that is the source of dark silicon and limits the percentage of a chip that can actively switch within a given power budget. To address this issue, a structure is needed to guarantee the limited power budget along with providing sufficient flexibility and performance for different applications with various communication requirements. In this article, we present a generalpurpose platform for future many-core Chip-Multiprocessors (CMPs) that benefits from the advantages of clustering, Network-on-Chip (NoC) resource sharing among cores, and power gating the unused components of clusters. We also propose two task mapping methods for... 

    P2R2: Parallel Pseudo-Round-Robin arbiter for high performance NoCs

    , Article Integration, the VLSI Journal ; November , 2014 ; ISSN: 1679260 Bashizade, R ; Sarbazi-Azad, H ; Sharif University of Technology
    2014
    Abstract
    Networks-on-Chip (NoCs) play an important role in the performance of Chip Multi-Processors (CMPs). Providing the desired performance under heavy traffics imposed by some applications necessitates NoC routers to have a large number of Virtual Channels (VCs). Increasing the number of VCs, however, will add to the delay of the critical path of the arbitration logic, and hence restricts the clock frequency of the router. In order to make it possible to enjoy the benefits of having many VCs and keep the clock frequency as high as that of a low-VC router, we propose Parallel Pseudo-Round-Robin (P2R2) arbiter. Our proposal is based on processing multiple groups of requests in parallel. Our... 

    P2R2: Parallel Pseudo-Round-Robin arbiter for high performance NoCs

    , Article Integration, the VLSI Journal ; Volume 50 , 2014 , pp.173–182 ; ISSN: 0167-9260 Bashizade, R ; Sarbazi-Azad, H ; Sharif University of Technology
    2014
    Abstract
    Networks-on-Chip (NoCs) play an important role in the performance of Chip Multi-Processors (CMPs). Providing the desired performance under heavy traffics imposed by some applications necessitates NoC routers to have a large number of Virtual Channels (VCs). Increasing the number of VCs, however, will add to the delay of the critical path of the arbitration logic, and hence restricts the clock frequency of the router. In order to make it possible to enjoy the benefits of having many VCs and keep the clock frequency as high as that of a low-VC router, we propose Parallel Pseudo-Round-Robin (P2R2) arbiter. Our proposal is based on processing multiple groups of requests in parallel. Our... 

    Traffic-aware buffer reconfiguration in on-chip networks

    , Article IEEE/IFIP International Conference on VLSI and System-on-Chip, VLSI-SoC, 5 October 2015 through 7 October 2015 ; Volume 2015-October , 2015 , Pages 201-206 ; 23248432 (ISSN) ; 9781467391405 (ISBN) Bashizade, R ; Sarbazi-Azad, H ; Sharif University of Technology
    IEEE Computer Society  2015
    Abstract
    Networks-on-Chip (NoCs) play a crucial role in the performance of Chip Multi-Processors (CMPs). Routers are one of the main components determining the efficiency of NoCs. As various applications have different communication characteristics and hence, buffering requirements, it is difficult to make proper decisions in this regard in the design time. In this paper, we propose a traffic-aware reconfigurable router which can adapt its buffers structure to the changes in the traffic of the network. Our proposed router manages to achieve up to 18.8% and 44.4% improvements in terms of postponing saturation rate under synthetic traffic patterns, and average packet latency for PARSEC applications,... 

    P2R2: Parallel pseudo-round-robin arbiter for high performance NoCs

    , Article Integration, the VLSI Journal ; Volume 50 , June , 2015 , Pages 173-182 ; 01679260 (ISSN) Bashizade, R ; Sarbazi Azad, H ; Sharif University of Technology
    Elsevier  2015
    Abstract
    Abstract Networks-on-Chip (NoCs) play an important role in the performance of Chip Multi-Processors (CMPs). Providing the desired performance under heavy traffics imposed by some applications necessitates NoC routers to have a large number of Virtual Channels (VCs). Increasing the number of VCs, however, will add to the delay of the critical path of the arbitration logic, and hence restricts the clock frequency of the router. In order to make it possible to enjoy the benefits of having many VCs and keep the clock frequency as high as that of a low-VC router, we propose Parallel Pseudo-Round-Robin (P2R2) arbiter. Our proposal is based on processing multiple groups of requests in parallel. Our... 

    Revisiting processor allocation and application mapping in future CMPs in dark silicon era

    , Article Advances in Computers ; Volume 110 , 2018 , Pages 35-81 ; 00652458 (ISSN); 9780128153581 (ISBN) Hoveida, M ; Aghaaliakbari, F ; Jalili, M ; Bashizade, R ; Arjomand, M ; Sarbazi Azad, H ; Sharif University of Technology
    Academic Press Inc  2018
    Abstract
    With technology advances and the emergence of new fabrication and VLSI technologies, current and future chip multiprocessors (CMPs) are expected to have tens to hundreds of processing elements and Gigabytes of on-chip caches, which are connected by a high bandwidth network-on-chip (NoC). Unfortunately, due to limited power budget of a computing system, specially for its processing element(s), it is impossible to keep all cores, caches, and network elements working at highest voltage level—that would resulted in dark silicon computing era, where by employing system-level or architecture-level techniques, one can keep a great portion of a CMP elements OFF (or in dim mode) to meet the power... 

    A Fully-pipelined Reconfigurable Microarchitecture for On-chip Routers

    , M.Sc. Thesis Sharif University of Technology Bashizade, Ramin (Author) ; Sarbazi-Azad, Hamid (Supervisor)
    Abstract
    The shrinkage of feature sizes has resulted in global wiring delays being the bottleneck in on-chip interconnects. As a consequence, Network-on-Chip (NoC) emerged as a desirable interconnect structure between Processing Elements (PEs) on a chip. On the other hand, due to the non-uniform communication patterns among PEs, it is beneficial for the routers input ports to have a reconfigurable buffer structure. Having this in mind, we proposed a reconfigurable microarchitecture for on-chip routers which is able to reconfigure the Virtual Channels (VCs) in input ports, without lowering the clock frequency of the router. For this purpose, we presented a simple and efficient mechanism for monitoring... 

    Network vulnerability analysis through vulnerability take-grant model (VTG)

    , Article 7th International Conference on Information and Communications Security, ICICS 2005, Beijing, 10 December 2005 through 13 December 2005 ; Volume 3783 LNCS , 2005 , Pages 256-268 ; 03029743 (ISSN); 3540309349 (ISBN); 9783540309345 (ISBN) Shahriari, H. R ; Sadoddin, R ; Jalili, R ; Zakeri, R ; Omidian, A. R ; Sharif University of Technology
    2005
    Abstract
    Modeling and analysis of information system vulnerabilities helps us to predict possible attacks to networks using the network configuration and vulnerabilities information. As a fact, exploiting most of vulnerabilities result in access rights alteration. In this paper, we propose a new vulnerability analysis method based on the Take-Grant protection model. We extend the initial Take-Grant model to address the notion of vulnerabilities and introduce the vulnerabilities rewriting rules to specify how the protection state of the system can be changed by exploiting vulnerabilities. Our analysis is based on a bounded polynomial algorithm, which generates the closure of the Take-Grant graph... 

    Sequence dependence of the binding energy in chaperone-driven polymer translocation through a nanopore

    , Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 83, Issue 1 , January , 2011 ; 15393755 (ISSN) Abdolvahab, R. H ; Ejtehadi, M. R ; Metzler, R ; Sharif University of Technology
    2011
    Abstract
    We study the translocation of stiff polymers through a nanopore, driven by the chemical-potential gradient exerted by binding proteins (chaperones) on the trans side of the pore. Bound chaperones prevent backsliding through the pore and, therefore, partially rectify the polymer passage. We show that the sequence of chain monomers with different binding affinity for the chaperones significantly affects the translocation dynamics. In particular, we investigate the effect of the nearest-neighbor adjacency probability of the two monomer types. Depending on the magnitude of the involved binding energies, the translocation speed may either increase or decrease with the adjacency probability. We... 

    First passage time distribution of chaperone driven polymer translocation through a nanopore: Homopolymer and heteropolymer cases

    , Article Journal of Chemical Physics ; Volume 135, Issue 24 , 2011 ; 00219606 (ISSN) Abdolvahab, R. H ; Metzler, R ; Ejtehadi, M. R ; Sharif University of Technology
    2011
    Abstract
    Combining the advection-diffusion equation approach with Monte Carlo simulations we study chaperone driven polymer translocation of a stiff polymer through a nanopore. We demonstrate that the probability density function of first passage times across the pore depends solely on the Péclet number, a dimensionless parameter comparing drift strength and diffusivity. Moreover it is shown that the characteristic exponent in the power-law dependence of the translocation time on the chain length, a function of the chaperone-polymer binding energy, the chaperone concentration, and the chain length, is also effectively determined by the Péclet number. We investigate the effect of the chaperone size on... 

    Reply: Abedpour, asgari, and tabar

    , Article Physical Review Letters ; Volume 106, Issue 20 , 2011 ; 00319007 (ISSN) Abedpour, N ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
    2011

    Irreversibility in response to forces acting on graphene sheets

    , Article Physical Review Letters ; Volume 104, Issue 19 , May , 2010 ; 00319007 (ISSN) Abedpour, N ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
    2010
    Abstract
    The amount of rippling in graphene sheets is related to the interactions with the substrate or with the suspending structure. Here, we report on an irreversibility in the response to forces that act on suspended graphene sheets. This may explain why one always observes a ripple structure on suspended graphene. We show that a compression-relaxation mechanism produces static ripples on graphene sheets and determine a peculiar temperature Tc, such that for T

    Analysis of design goals of cryptography algorithms based on different components

    , Article Indonesian Journal of Electrical Engineering and Computer Science ; Volume 23, Issue 1 , 2021 , Pages 540-548 ; 25024752 (ISSN) Molk, A.M.N.G ; Aref, M. R ; Khorshiddoust, R. R ; Sharif University of Technology
    Institute of Advanced Engineering and Science  2021
    Abstract
    Cryptography algorithms are a fundamental part of a cryptographic system that is designed and implemented to increase information security. They are the center of attention of experts in the information technology domains. Although the cryptography algorithms are implemented to attain the goals such as confidentially, integrity, and authenticity of designing, but other matters that must be noticed by designers include speed, resource consumption, reliability, flexibility, usage type, and so on. For the useful allocation of hardware, software, and human resources, it is important to identify the role of each of the factors influencing the design of cryptographic algorithms to invest in the... 

    Conservation of statistical results under the reduction of pair-contact interactions to solvation interactions

    , Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 72, Issue 6 , 2005 ; 15393755 (ISSN) Radja, N.H ; Farzami, R. R ; Ejtehadi, M. R ; Sharif University of Technology
    2005
    Abstract
    We show that the hydrophobicity of sequences is the leading term in Miyazawa-Jernigan interactions. Being the source of additive (solvation) terms in pair-contact interactions, they were used to reduce the energy parameters while resulting in a clear vector manipulation of energy. The reduced (additive) potential performs considerably successful in predicting the statistical properties of arbitrary structures. The evaluated designabilities of the structures by both models are highly correlated. Suggesting geometrically nondegenerate vectors (structures) as proteinlike structures, the additive model is a powerful tool for protein design. Moreover, a crossing point in the log-linear diagram of... 

    Multifunctional hyperelastic structured surface for tunable and switchable transparency

    , Article Applied Sciences (Switzerland) ; Volume 11, Issue 5 , 2021 , Pages 1-11 ; 20763417 (ISSN) Mahabadi, R. K ; Goudarzi, T ; Fleury, R ; Naghdabadi, R ; Sharif University of Technology
    MDPI AG  2021
    Abstract
    We leverage the crucial hyperelastic properties of a multifunctional structured surface to optimize the reconfigurability of the electromagnetic transmission under large nonlinear mechanical deformations. This multiphysics, multifunctional, hyperelastic structured surface (HSS) offers two simultaneous intriguing functionalities; tunability and switchability. It is made of copper reso-nators and a Polydimethylsiloxane (PDMS) substrate, which is one of the most favorable deformable substrates due to its hyperelastic behavior. The proposed HSS is fabricated via an original cost-effective technique and the multiphysics functionalities are captured in both experimental tests and numerical... 

    MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments

    , Article PLoS Computational Biology ; Volume 18, Issue 6 , 2022 ; 1553734X (ISSN) Alinejad Rokny, H ; Modegh, R. G ; Rabiee, H. R ; Sarbandi, E. R ; Rezaie, N ; Tam, K. T ; Forrest, A. R. R ; Sharif University of Technology
    Public Library of Science  2022
    Abstract
    Hi-C is a genome-wide chromosome conformation capture technology that detects interactions between pairs of genomic regions and exploits higher order chromatin structures. Conceptually Hi-C data counts interaction frequencies between every position in the genome and every other position. Biologically functional interactions are expected to occur more frequently than transient background and artefactual interactions. To identify biologically relevant interactions, several background models that take biases such as distance, GC content and mappability into account have been proposed. Here we introduce MaxHiC, a background correction tool that deals with these complex biases and robustly... 

    SER of M-PSK modulation in incremental-selective decode-and-forward cooperative communications over Rayleigh fading channels

    , Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 432-437 ; 17389445 (ISSN) ; 9788955191554 (ISBN) Renani, R. A ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
    2011
    Abstract
    In this paper we consider a cooperative communication systems over Rayleigh fading channels. The system utilizes a combination of incremental and selective decode-and-forward (ISDF) relaying protocols. The symbol error rate (SER) of M-PSK modulation for the ISDF protocol is derived. Using an approximation of the SER expression, the optimal power allocation is investigated. In order to reduce the complexity of the receiver, we used a modified version of the ISDF protocol which does not use the storage or retransmission of the first phase signal. We also derived optimal power allocation coefficient for modified ISDF. It has been noted that for the optimal power allocation in the ISDF protocol,... 

    Power allocation for incremental-selective decode-and-forward cooperative communications over Rician fading channels

    , Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 730-734 ; 17389445 (ISSN) ; 9788955191554 (ISBN) Renani, R. A ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
    2011
    Abstract
    In this paper we consider a relaying communication system over Rician fading channels. In this system we assume simple Incremental-Selective Decode-and-Forward (ISDF) protocol, which is jointly combining incremental and selective DF relaying protocols. In this protocol, storage or retransmission of the first phase signal are not allowed. We analyze the symbol error rate (SER) performance of the recommended protocol with M-PSK modulation. We evaluate the performance of the protocol in the frequency nonselective slow Rician fading channels. Using the approximation of the SER expression, the optimal power allocation is investigated. Our results show that at least 50% of total power must be used... 

    Efficient and practical protocol for silylation of hydroxyl groups using reusable lithium perchlorate dispread in silica gel under neutral condition [electronic resource]

    , Article Journal of Organometallic Chemistry ; 2006, Volume 691, Issue 5, Pages 817–820 Azizi, N. (Najmodin) ; Yousefi, R ; Saidi, M. R ; Sharif University of Technology
    Abstract
    A very efficient and mild procedure for the trimethylsilylation of a wide variety of alcohols, including primary, allylic, benzylic, secondary, hindered secondary, tertiary, and phenols with hexamethyldisilazane on the surface of silica gel dispersed with LiClO4 in room temperature at few minutes in excellent yields under neutral conditions is reported. This procedure also allows the excellent selectivity under LP-SiO2 system for silylation of alcohols in the presence of amine and phenolic hydroxy groups