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    A Novel Structural Based Similarity Measure for MRI and Ultrasound Registration

    , M.Sc. Thesis Sharif University of Technology Moaven, Aria (Author) ; Fatemizadeh, Emadodin (Supervisor)
    Abstract
    One of the most important issues in medical image processing is the registration of images with various imaging modalities, because in this case, one can take advantage of these imaging modalities and sometimes fuse and use the useful information of each one in the form of a single image.As it was said, MRI and ultrasound images each have their own disadvantages and advantages, and by considering these two modalities, they have tried to integrate the good features of these two. As we know, one of the destructive cases in the MRI image is the inhomogeneity of the image, a inhomogeneity due to the fact that the main magnetic field is not constant and makes the parts of the image brighter or... 

    Model Based Analysis of tDCS Effects on Brain Networks in Methamphetamine Addicts

    , M.Sc. Thesis Sharif University of Technology Hariri, Ali (Author) ; Fatemizadeh, Emadodin (Supervisor) ; Ekhtiari, Hamed (Co-Advisor)
    Abstract
    Despite intensive scientific investigations, drug addiction treatment outcomes have not significantly improved in more than 30 years. The addicted human brain can be conceptualized as a set of networks that spatially and temporally interact with each other in an abnormal way. Over the past several decades, neuroimaging techniques have contributed important novel insights into the neuroplastic alterations that result from drug dependence. Also functional connectivity magnetic resonance imaging (fcMRI) has emerged as a powerful tool for mapping large-scale networks in the human brain. On the other hand, transcranial direct current stimulation (tDCS) has been reintroduced as a noninvasive brain... 

    Development of cold rolling and intercritical annealing texture in two TRIP-aided steels

    , Article 14th International Conference on Textures of Materials, ICOTOM 14, Leuven, 11 July 2005 through 15 July 2005 ; Volume 495-497, Issue PART 1 , 2005 , Pages 513-518 ; 02555476 (ISSN); 087849975X (ISBN); 9780878499755 (ISBN) Emadodin, E ; Akbarzadeh, A ; Sharif University of Technology
    Trans Tech Publications Ltd  2005
    Abstract
    High strength TRIP-aided steel sheets with high formability and better ductility are of industrial interest. Texture control and retained austenite characterization are considered as the main factors with respect to the formability and ductility. In this work, the effect of cold rolling and intercritical annealing on texture development has been investigated for two TRTP-aided steel sheets, which are different in Si and Al content. Experiments show that the cold rolling extends the a and γ-fibers on these grades of steel. Intercretically annealing decreases the intensity of α-fiber and leads to sharpness of γ-fiber, especially for Al steel  

    A new watermarking algorithm based on human visual system for content integrity verification of region of interest

    , Article Computing and Informatics ; Volume 31, Issue 4 , 2012 , Pages 877-899 ; 13359150 (ISSN) Fatemizadeh, E ; Maneshi, M ; Sharif University of Technology
    2012
    Abstract
    This paper proposes a semi-fragile, robust-to-JPEG2000 compression watermarking method which is based on the Human Visual System (HVS). This method is designed to verify the content integrity of Region of Interest (ROI) in tele-radiology images. The design of watermarking systems based on HVS leads to the possibility of embedding watermarks in places that are not obvious to the human eye. In this way, notwithstanding increased capacity and robustness, it becomes possible to hide more watermarks. Based on perceptual model of HVS, we propose a new watermarking scheme that embeds the watermarks using a replacement method. Thus, the proposed method not only detects the watermarks but also... 

    Roi-based 3D human brain magnetic resonance images compression using adaptive mesh design and region-based discrete wavelet transform

    , Article International Journal of Wavelets, Multiresolution and Information Processing ; Volume 8, Issue 3 , 2010 , Pages 407-430 ; 02196913 (ISSN) Fatemizadeh, E ; Shooshtari, P ; Sharif University of Technology
    2010
    Abstract
    Due to the large volume required for medical images for transmission and archiving purposes, the compression of medical images is known as one of the main concepts of medical image processing. Lossless compression methods have the drawback of a low compression ratio. In contrast, lossy methods have a higher compression ratio and suffer from lower quality of the reconstructed images in the receiver. Recently, some selective compression methods have been proposed in which the main image is divided into two separate regions: Region of Interest (ROI), which should be compressed in a lossless manner, and Region of Background (ROB), which is compressed in a lossy manner with a lower quality. In... 

    Non-Rigid Medical Image Registration Based on Information Theory

    , M.Sc. Thesis Sharif University of Technology Khorsandi, Rahman (Author) ; Fatemizadeh, Emadoddin (Supervisor)
    Abstract
    The registration of images is a fundamental task in numerous applications in medical image processing. The importance of medical image registraiton due to the imaging systems development in last decades is obvious to every one. Especially the wide employment and different capabilities of these systems has caused more attention to this field of image processing. Th e application of medical image registraiton is extended from clinical diagnosis and treatment evaluation, to image guided surgery. The dimension of images as well as modalities of imaging and imaging subjectshas made a wide variety of problems in this branch of image processing. Registration, briefly speaking, is a geometrical... 

    Design a Content-Based Color Image Retrieval Using Attention Driven Saliency Map

    , M.Sc. Thesis Sharif University of Technology Ebrahimi, Davood (Author) ; Fatemizadeh, Emadeddin (Supervisor)
    Abstract
    Content Based Image Retrieval (CBIR) is in fact an image search engine which Operates on image Context . in this thesis (project) the aim was to use the Visual attention of humans in detecting the objects in image. in this ability first a salient image of the most important things in the image would be created And after an initial separation , for the final recognition the other features (details) in the image will be used It’s a while that the use of Visual attention models and saliency maps in designing the interfaces between humans and machines has been considered widely. This fact in the design of CBIR systems has not a good background (satisfying history). In this thesis I have... 

    MRI Reconstruction using Partial k-Space Scans

    , M.Sc. Thesis Sharif University of Technology Farzi, Mohsen (Author) ; Fatemizadeh, Emadeddin (Supervisor)
    Abstract
    Based on Shannon theory, continuous-time band-limited signals are guaranteed to be recovered per-fectly subject to sampling with Nyquist rate. Due to inherently slow MRI sensors, sampling with Nyquist rate excruciatingly increases the scan time. This leads to patient inconvenience along with degradation in image quality caused by geometrical distortions.In recent years, Compressed Sensing (CS) has been introduced as an alternative to the Nyquist theory for the acquisition of sparse or compressible signals that can be well approximated by K ≪ N coeffi-cients from a N-dimensional basis. In CS theory, measurements are actually inner products of signal x with a base vector ϕi. In Fourier encoded... 

    Robust Similarity Measure in Medical Image Registration

    , Ph.D. Dissertation Sharif University of Technology Ghaffari, Aboozar (Author) ; Fatemizadeh, Emadeddin (Supervisor)
    Abstract
    Image Registration is spatially alignment of two images in a wide range of applications such as remote sensing, computer assisted surgery, and medical image analysis and processing. In general, registration algorithms can be categorized as either intensity based or feature based. The feature based methods use the alignment between the extracted features in two images. The simplest feature is images intensity which is directly used in the intensity based method via similarity measure. This similarity measure quantifies the matching of two images.Similarity measure is main core of image registration algorithms. Spatially varying intensity dis-tortion is an important challenge in a wide range... 

    Decoding the Long Term Memory using Magnetoencephalogram

    , M.Sc. Thesis Sharif University of Technology Tavakoli, Sahar (Author) ; Fatemizadeh, Emad (Supervisor)
    Abstract
    Memory and recalling process has always been a basic question. Decoding the Long-Term_Memory is one of the first steps in answering this question. Since various experiments in the field of human long-term memory, was conducted. This research is motivated by a trial that in which, the Mgntvansfalvgram (MEG) has been recorded while recalling the color and orientation of a grading which is associated with an object, after the object has been shown. High accuracy in Decoding the mentioned color and direction, will be decoding the long-term memory. In order to enhance memory decoding, the research studies different classifiers such as sparse based classifiers and other popular one. It has also... 

    Activation Detection in fMRI Using Nonlinear Time Series Analysis

    , M.Sc. Thesis Sharif University of Technology Taalimi, Ali (Author) ; Fatemizadeh, Emadeddin (Supervisor)
    Abstract
    Functional Magnetic Resonance Imaging (fMRI) is a recently developed neuroimaging technique with capacity to map neural activity with high spatial precision. To locate active brain areas, the method utilizes local blood oxygenation changes which are reflected as small intensity changes in a special type of MR images. The ability to non-invasively map brain functions provides new opportunities to unravel the mysteries and advance the understanding of the human brain, as well as to perform pre-surgical examinations in order to optimize surgical interventions. To obtain these goals the analysis of fMRI is the first condition which should be met. First methods were linear and assumed the... 

    Medical Image Fusion based on Deep Learning

    , M.Sc. Thesis Sharif University of Technology Fayyazi, Alireza (Author) ; Fatemizadeh, Emadeddin (Supervisor)
    Abstract
    When medical imaging modalities are considered individually, they do not contain sufficient information of various aspects of a tissue. Medical image fusion methods have been proposed such that the information deficiency of each medical imaging modality, which is caused by inherent characteristics of imaging modalities, is eliminated and the resultant outputs contain more information than the individual modalities alone. This study proposes a novel method for medical image fusion of MRI and PET images based on progressive dual-discriminator GAN. The progressive part of the method, adds layers to the discriminators and generator in accordance with the resolution of down-scaled source images... 

    Medical Image Registration using Self-Supervised Learning

    , M.Sc. Thesis Sharif University of Technology Kalbasi, Mohammad (Author) ; Fatemizadeh, Emadoddin (Supervisor)
    Abstract
    Image registration is fundamental in medical imaging, enabling the accurate alignment and analysis of images from different modalities. This process is essential for various applications, including the assessment of tissue growth and tumor evolution, preoperative and intraoperative planning, and segmentation. While recent advances in deep learning have improved unsupervised monomodal medical image registration, these methods typically rely on transforming images and computing a similarity loss function between the transformed and target images. However, for multimodal image registration, traditional similarity functions often lack expressiveness and are prone to numerous local optima. To... 

    Functional Connectivity in Depressive Disorder Using Functional Magnetic
    Resonance Imaging Data in Auditory Stimulation Mode

    , M.Sc. Thesis Sharif University of Technology Asgharian, Zeynab (Author) ; Fatemizadeh, Emadeddin (Supervisor)
    Abstract
    Evidence shows that people with depressive disorder show altered functional connectivity in some of the parts of the brain. The functional characteristics of these brain areas in people with this disorder have not been completely determined. On the other hand, some researchers have rejected the static nature of functional connectivity and stated that functional connectivity changes over time. Measuring brain activity non-invasively with functional magnetic resonance imaging increases our understanding of brain organizations and functional mechanisms, so in this study, we used the functional magnetic resonance imaging data of 18 healthy subjects and 18 subjects with depression. Method: The... 

    Online undersampled dynamic MRI reconstruction using mutual information

    , Article 2014 21st Iranian Conference on Biomedical Engineering, ICBME 2014 ; 17 February , 2014 , Pages 241-245 ; ISBN: 9781479974177 Farzi, M ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    2014
    Abstract
    We propose an algorithm based on mutual information to address the problem of online reconstruction of dynamic MRI from partial k-space measurements. Most of previous compressed sensing (CS) based methods successfully leverage sparsity constraint for offline reconstruction of MR images, yet they are not used in online applications due to their complexities. In this paper, we formulate the reconstruction as a constraint optimization problem and try to maximize the mutual information between the current and the previous time frames. Conjugate gradient method is used to solve the optimization problem. Using Cartesian mask to undersample k-space measurements, the proposed method reduces... 

    Mammogram image retrieval via sparse representation

    , Article 2011 1st Middle East Conference on Biomedical Engineering, MECBME 2011, Sharjah, 21 February 2011 through 24 February 2011 ; 2011 , Pages 63-66 ; 9781424470006 (ISBN) Siyahjani, F ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    2011
    Abstract
    In recent years there has been a great effort to enhance the computer-aided diagnosis systems, since proven similar pathologies, in the past, plays an important role in diagnosis of the current cases, content based medical image retrieval has been emerged. In this work we have designed a decision making machine in which utilizes sparse representation technique to preserve semantic category relevance among the retrieved images and the query image, this machine comprises optimized wavelets (adapted using lifting scheme) to extract appropriate visual features in order to grasp visual content of the images, afterwards by using some classical methods, Raw data vectors become applicable for sparse... 

    MRI image reconstruction via new K-space sampling scheme based on separable transform

    , Article Iranian Conference on Machine Vision and Image Processing, MVIP ; September , 2013 , Pages 127-130 ; 21666776 (ISSN) ; 9781467361842 (ISBN) Oliaiee, A ; Ghaffari, A ; Fatemizadeh, E ; Sharif University of Technology
    IEEE Computer Society  2013
    Abstract
    Reducing the time required for MRI, has taken a lot of attention since its inventions. Compressed sensing (CS) is a relatively new method used a lot to reduce the required time. Usage of ordinary compressed sensing in MRI imaging needs conversion of 2D MRI signal (image) to 1D signal by some techniques. This conversion of the signal from 2D to 1D results in heavy computational burden. In this paper, based on separable transforms, a method is proposed which enables the usage of CS in MRI directly in 2D case. By means of this method, imaging can be done faster and with less computational burden  

    Integration of spatial fuzzy clustering with level set for segmentation of 2-D angiogram

    , Article IECBES 2014, Conference Proceedings - 2014 IEEE Conference on Biomedical Engineering and Sciences: "Miri, Where Engineering in Medicine and Biology and Humanity Meet", 8 December 2014 through 10 December 2014 ; December , 2015 , Pages 309-314 ; 9781479940844 (ISBN) Ghalehnovi, M ; Zahedi, E ; Fatemizadeh, E ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2015
    Abstract
    Coronary angiography is a vital instrument to detect the prevailing of vascular diseases, and accurate vascular segmentation acts a crucial role for proper quantitative analysis of the vascular tree morphological features. Level set methods are popular for segmenting the coronary arteries, but their performance is related to suitable start-up and optimum setting of regulating parameters, essentially done manually. This research presents a novel fuzzy level set procedure with the objective of segmentation of the coronary artery tree in 2-D X-ray angiography as automatically. It is clever to clearly develop from the early segmentation with spatial fuzzy grouping. The adjusting parameters of... 

    Nonlinear Dimensionality Reduction via Path-Based Isometric Mapping

    , Article IEEE Transactions on Pattern Analysis and Machine Intelligence ; Volume 38, Issue 7 , 2016 , Pages 1452-1464 ; 01628828 (ISSN) Najafi, A ; Joudaki, A ; Fatemizadeh, E ; Sharif University of Technology
    IEEE Computer Society  2016
    Abstract
    Nonlinear dimensionality reduction methods have demonstrated top-notch performance in many pattern recognition and image classification tasks. Despite their popularity, they suffer from highly expensive time and memory requirements, which render them inapplicable to large-scale datasets. To leverage such cases we propose a new method called "Path-Based Isomap". Similar to Isomap, we exploit geodesic paths to find the low-dimensional embedding. However, instead of preserving pairwise geodesic distances, the low-dimensional embedding is computed via a path-mapping algorithm. Due to the much fewer number of paths compared to number of data points, a significant improvement in time and memory... 

    A heuristic method for finding the optimal number of clusters with application In medical data

    , Article 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08, Vancouver, BC, 20 August 2008 through 25 August 2008 ; 2008 , Pages 4684-4687 ; 9781424418152 (ISBN) Bayati, H ; Davoudi, H ; Fatemizadeh, E ; Sharif University of Technology
    IEEE Computer Society  2008
    Abstract
    In this paper, a heuristic method for determining the optimal number of clusters is proposed. Four clustering algorithms, namely K-means, Growing Neural Gas, Simulated Annealing based technique, and Fuzzy C-means in conjunction with three well known cluster validity indices, namely Davies-Bouldin index, Calinski-Harabasz index, Maulik-Bandyopadhyay index, in addition to the proposed index are used. Our simulations evaluate capability of mentioned indices in some artificial and medical datasets. © 2008 IEEE