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Drug-Target Interaction Prediction with Deep Learning and Recommender Systems
, M.Sc. Thesis Sharif University of Technology ; Ghafourian Ghahramani, Amir Ali (Supervisor) ; Kavousi, Kaveh (Supervisor)
Abstract
A drug can be defined as a substance made to prevent disease, cure a specific symptom, relieve pain, and reduce anomalies in the body. The process of drug designing is so laborious, complex, costly, and time-consuming that chance of failure during the lab experiment stages is high. These challenges have persuaded researchers to find new usage for existing drugs, referred to as drug repurposing, with the main advantage of reducing cost, risk, and time. To this aim, computational methods have been applied to discover hidden pharmaceutical capabilities of drugs in terms of predicting whether a particular drug can interact with a particular protein.Graph Neural Networks (GNNs) have recently...
Mutation Prediction of Infectious Viruses Based on Different Machine Learning Approaches
, M.Sc. Thesis Sharif University of Technology ; Ghafourian Ghahramani, Amir Ali (Supervisor) ; Kavousi, Kaveh (Supervisor)
Abstract
Predicting the evolution of viruses is vital in controlling, preventing, and treating diseases. Mutations that evade the host immune system can propagate and persist through generations, making it crucial to anticipate and combat them effectively. The 1918 H1N1 pandemic serves as an example of the devastating impact of pandemics caused by viral mutations. By predicting mutations in advance, we can identify potential future pandemics and take effective preventative measures to mitigate their impact. Proteins play a vital role in the functioning of viruses. They are involved in various processes, such as replication, transcription, and host cell invasion. Any changes in the protein sequence...
Analysis and Performance Enhancement of MAC Layer Protocols in Vehicular Ad Hoc Networks
, Ph.D. Dissertation Sharif University of Technology ; Afshin Hemmatyar, Ali Mohammad (Supervisor)
Abstract
The Intelligent Transportation Systems (ITS) are aimed to provide innovative services to improve safety of the traffic and make the use of the transport networks more coordinated. Such services are implemented by establishing wireless communications among the vehicles. The resulting mobile ad hoc network formed among the moving vehicles is called the Vehicular Ad Hoc Network (VANET). The IEEE 802.11p has been emerged as the first standardized contention-based MAC protocol for VANETs. The overall performance of the contention-based MAC protocols is directly dependent on the number of the contending nodes . To analyze the performance of the 802.11p protocol, most of the existing approaches...
Scene Interaction Aware Perception for Autonomous Driving Tasks
, M.Sc. Thesis Sharif University of Technology ; Ghafourian Ghahramani, Amir Ali (Supervisor) ; Shirmohammadi, Zahra (Co-Supervisor)
Abstract
Safely navigating complex urban environments presents a critical challenge in autonomous driving perception tasks. This challenge necessitates the ability to consider interaction with traffic scene agents while accurately predicting the behavior of vulnerable road users (VRUs) like pedestrians. This thesis aims to enhance AV perception by focusing on scene interaction awareness from two key perspectives: vehicle-vehicle and vehicle-pedestrian interactions. For vehicle-vehicle interactions, monocular depth estimation, a low-cost, data-driven approach, is employed to approximate inter-vehicle distance from an RGB image. First, vehicles and their lights are detected using the YOLOv7 algorithm...
Brain Tumor Detection with Vision Transformers and Faster R-CNN
, M.Sc. Thesis Sharif University of Technology ; Hemmatyar, Ali Mohammad Afshin (Supervisor) ; Ghahramani Ghahramani, Amir Ali (Co-Supervisor)
Abstract
In the field of cancer diagnosis, particularly brain tumors, the priority is to achieve highly accurate tumor detection. Deep learning has shown remarkable potential in object detection tasks, making it a valuable tool for identifying brain tumors. We have proposed a new method for combining the strength of Faster R-CNN in detecting objects and the ability of Vision Transformer’s (Faster-VIT) ability to extract essential features. The proposed method significantly improves the accuracy and efficiency of brain tumor detection in MRI images. We have called the proposed combination Faster-VIT. To assess the effectiveness of the proposed method, we have utilized the Br35H dataset, comprising...
Hybrid approach to analyze the impact of vehicular traffic on performance of 802.11p protocol for safety communications in vehicular ad hoc networks: a quantitative analysis
, Article Wireless Personal Communications ; Volume 97, Issue 3 , 2017 , Pages 4493-4528 ; 09296212 (ISSN) ; Afshin Hemmatyar, A. M ; Sharif University of Technology
2017
Abstract
The rapid developments in wireless communications have introduced the vehicular ad hoc networks as an efficient tool to improve the safety of traffic through Dedicated Short Range Communications systems on highways. This paper addresses the broadcast mode of the 802.11p protocol and it quantitatively analyzes the impact of the highway vehicular traffic on its performance in terms of the packet delivery ratio and the packet transmission delay. To this aim, we propose to consider the number of the contending vehicles as a traffic-dependent stochastic counting process, which can be computed by analyzing the inter-vehicle spacing distribution in different traffic conditions. Based on the...
A graph-based performance analysis of the 802.11p MAC protocol for safety communications in highway vehicular ad hoc networks
, Article Computer Journal ; Volume 60, Issue 2 , 2017 , Pages 185-209 ; 00104620 (ISSN) ; Hemmatyar, A. M. A ; Sharif University of Technology
Oxford University Press
2017
Abstract
We address the performance of the 802.11p protocol in terms of the packet delivery ratio (PDR) and the packet reception ratio (PRR) for broadcasting safety messages in highway environments. Regarding the semi-sparse and intermediate traffic, we try to answer to questions such as what are the upper, dominant and lower bounds of PDR and PRR in each traffic condition? How they may deviate from their average values? and What fraction of vehicles may experience such bounds? To answer to such questions, we propose to consider the communication graph formed among vehicles as a special type of the complex networks and we apply the recently proposed obligatory attachment ruleto synthesize such...
A network model for vehicular Ad hoc networks: an introduction to obligatory attachment rule
, Article IEEE Transactions on Network Science and Engineering ; Volume 3, Issue 2 , 2016 , Pages 82-94 ; 23274697 (ISSN) ; Hemmatyar, A. M. A ; Kavousi, K ; Sharif University of Technology
2016
Abstract
In the past few years, the study of complex networks has attracted the attention of researchers. Many real networks, ranging from technological networks such as the Internet to biological networks, have been considered as special types of complex networks. Through application of the network science, important structural properties of such networks have been analyzed and the mechanisms that form such characteristics have been introduced. In this paper, we address the structural characteristics of a technological network called Vehicular Ad hoc Networks (VANETs). Recent studies reveal that the communication graph of VANETs has some interesting characteristics including: the Gaussian degree...
Buildings Construction Cost Prediction Using Hybrid Machine Learning Models
, M.Sc. Thesis Sharif University of Technology ; Haj Kazem, Kashani (Supervisor) ; Ghahramani, Amir Ali (Co-Supervisor)
Abstract
Since the awareness of project costs is a prerequisite for resource allocation and budget planning in construction projects, it is crucial to forecast project costs. In addition, as a part of the decision-making process, managers use predicted construction costs to assess and reduce project time risks. This study aims to estimate and predict residential building construction costs using hybrid machine learning models. In this research, to estimate the construction costs, in addition to considering the general characteristics of buildings, economic parameters are also considered. These physical and economic features are determined using experts' opinions and the results of previous studies....
An AI Based Cryptocurrency Trading System
, M.Sc. Thesis Sharif University of Technology ; Khayyat, Amir Ali Akbar (Supervisor)
Abstract
Cryptocurrencies are not only regarded as a trustworthy method of financial transaction validated by a decentralized cryptographic system as opposed to a centralized authority, but also as one of the most popular and lucrative forms of trade and investing. Predicting the price of a cryptocurrency is a challenging topic in time-series research. Its intricacy is due to the volatility and large swings of cryptocurrencies' price. The emergence of brand-new cryptocurrencies, which might present a profitable trading opportunity but lack sufficient historical data for technical analysis, prompted us to develop a trading strategy that could be applied universally. The forecast of the next timestep's...
Numerical Investigation of Dewetting of Evaporating thin Films over Nanometric Topography
, M.Sc. Thesis Sharif University of Technology ; Moosavi, Ali (Supervisor)
Abstract
Evaporation and condensation of thin films can rupture or stabilize thin film .We show that evaporation hastens dewetting of a thin film. Dewetting over nanometric downward step causes pinning of the contact line near the step. This phenomena is not permanent and after certain time that contact angle reaches to its critical value depinnnig happens. We also study the effect of the step size, contact angle, film thickness, slip and evaporation on the depinning time of the contact line. We show that depinnig time has a reverse relation with the rate of evaporation
Study of the Current Status and Future Perspective of E-Commerce in IRAN
, M.Sc. Thesis Sharif University of Technology ; Moayedi, Vafa (Supervisor)
Abstract
The main purpose of my research is to present a predictive E-Commerce plan for Iran. For many people the term "electronic commerce" means shopping on the part of the Internet called the World Wide Web, but other technologies such as wireless transmissions on mobile telephone and personal digital assistant devices are also included. In our thesis the term Electronic Commerce or (E-Commerce) is used in its broadest sense, and includes all business activities conducted using electronic data transmission technologies. In Iran e-commerce has achieved an important role and is facing remarkable acceptance in trade operations, therefore my study focuses on the development of E-Commerce model in...
Design and Implementation of Tunable Microwave Gain Equalizer
,
M.Sc. Thesis
Sharif University of Technology
;
Banai, Ali
(Supervisor)
Abstract
Modern broadband microwave and millimeter-wave systems often struggle with excessive pass band ripple and negative gain slopes due to the loss of transmission lines such as coaxial cables, or ripples in the gain characteristic of broadband amplifiers. The common solution for this problem is using a gain equalizer to compensate for the intrinsic pass band variation with some extra loss in the band of interest in return.Designed equalizers often have a constant slope in their bandwidth. However, having ripples in pass band or in other words slope changing in some parts of the band is one of the issues that designers should deal with. In this thesis, after reviewing the previous works on the...
Design and Fabrication of a 1GHz Low phase Noise SAW Oscillator
, M.Sc. Thesis Sharif University of Technology ; Banai, Ali (Supervisor)
Abstract
For decades Crystal Oscillators (XO) have been the unequaled references for stable and low noise frequency sources. This leadership is due to their high Q-factor. The resonant frequency of such crystal resonator is inversely proportional to the thickness of the quartz disk (the resonant cavity) and is today limited , by physical manufacturing constraints , to about 150 MHz . in order to avoid such limitation , the solution is to start with an oscillator at higher fundamental frequency. SAW technology on quartz offers this opportunity . with SAW the resonant cavity size is not linked to the thickness of the substrate and resonant frequencies up to the GHz range are achievable. In this thesis...
Effect of Subsequent Drying and Wetting on Small Strain Shear Modulus of Unsaturated Silty Soils Using Bender Element
, M.Sc. Thesis Sharif University of Technology ; Khosravi, Ali (Supervisor)
Abstract
Evaluation of the seismic-induced settlement of an unsaturated soil layer depends on several variables, among which the small strain shear modulus, Gmax, and soil’s state of stress have been demonstrated to be of particular significance. Recent interpretation of trends in Gmax revealed considerable effects of the degree of saturation and hydraulic hysteresis on the shear stiffness of soils in unsaturated states. Accordingly, the soil layer is expected to experience different settlement behaviors depending on the soil saturation and seasonal weathering conditions. In this study, a semi-empirical formulation was adapted to extend an existing Gmax model to infer hysteretic effects along...
On Efficiency and Bandwidth Enhancement of Integrated Class-J Power Amplifiers
, Ph.D. Dissertation Sharif University of Technology ; Medi, Ali (Supervisor)
Abstract
Power amplifiers (PAs) are one of the key components in radio-frequency (RF) and microwave systems. In these systems, PAs must be highly efficient to simplify the thermal management and to enhance dc power requirements. Future systems, including WiMax, 4G, 5G, and beyond, will likely require larger bandwidths due to their wider spectral allocations caused by the extended bandwidth of baseband signals. Therefore, highly-efficient and broadband PAs are needed to be employed in these systems. To realize high-efficiencies over wide frequency ranges, class-J mode of operation was introduced by Cripps in 2009. Class-J mode of operation is capable of maintaining a high efficiency (78% in theory)...
Design and Implementation of a Voltage Controlled Oscillator For 77GHz Automotive Radar
, M.Sc. Thesis Sharif University of Technology ; Medi, Ali (Supervisor)
Abstract
Wideband mm-wave radars are gaining popularity in automotive applications due to their superiority in harsh weather conditions, high distance resolution, precise velocity measurement, and superior spatial resolution. The primary purpose of this thesis is to design and implement a voltage-controlled oscillator for 77GHz automotive radar applications.Phase noise -as one of the most crucial specifications in VCO design- Phase noise improvement techniques as well as harmonic engineering methods are delineated. Also, an Ocean-based code for ISF simulation is introduced and developed to obviate the need for additional signal processing software so that simulation speed increases...
Analyzing Narrative Policy Framework of Innovation Policy in Development of Iran’s Innovation Ecosystem
, M.Sc. Thesis Sharif University of Technology ; Maleki, Ali (Supervisor)
Abstract
The development of innovation ecosystems has become a global trend. These ecosystems have proven their importance to governments by having a significant impact on the creation of technology companies and the economic growth of the country. In Iran, too, for many years, efforts have been made under various headings to develop the innovation ecosystems. In this dissertation, based on the narrative policy framework, the existing policy narratives of innovation ecosystems development policy in iran between 2013-20 years in the case of startup ecosystem have been analyzed. After analyzing these data, it was found that the three main narratives of catch-up, wealth creation and infiltration, have...
A Persian Dialog System with Sequence to Sequence Learning
, M.Sc. Thesis Sharif University of Technology ; Sameti, Hossein (Supervisor)
Abstract
Conversation modeling is one of the most important goals in the field of understanding natural language and machine intelligence. Recently, with the enormous growth of the Internet and social networks, the amount of available data on the Web has increased significantly.This makes it possible to use data-driven approaches to solve the modeling problem of conversation.One of the most recent data-driven methods is the sequence to sequence modeling. In this document, after providing the necessary prerequisites, we examined the various models that have used the sequence to sequence approach for conversation modeling. We further examined the ways of improving the efficiency of this modeling...
Theoretical and Experimental Modeling of Vortex Engine in Ramjet Application
, M.Sc. Thesis Sharif University of Technology ; Ghafourian, Akbar (Supervisor) ; Saeedi, Mohsen (Supervisor) ; Mozaffari, Ali Asghar (Supervisor)
Abstract
Heat transfer to combustion chamber walls is an unwanted phenomenon. Reduction of this heat transfer by using bidirectional swirl flow, as proved in past studies, can result in time and cost saving methods in design and fabrication of combustion chambers. Bidirectional Swirl flow, existing in vortex engine, maintains the chamber wall cool. This characteristic of such flow field, among with many other advantages for it, makes researchers more interested in studying the propulsion of it as well as its other applications. Bidirectional swirl flow in liquid fuel ramjet engines has the proven advantage of keeping the combustion chamber walls cool and in solid fuel ramjet engines in increasing the...