Sharif Digital Repository

The optical implementation of mathematical spatial operators is a critical step toward achieving practical high-speed, low-energy analog optical processors. In recent years, it has been shown that using fractional derivatives in many engineering and science applications leads to more accurate results. In the case of optical spatial mathematical operators, the derivatives of the first and second orders have been investigated. But no research has been performed on fractional derivatives. On the other hand, in previous studies, each structure is dedicated to a single integer order derivative. This paper proposes a tunable structure made of graphene arrays on silica to implement fractional... 

This paper addresses the crucial task of identifying DNA/RNA binding sites, which has implications in drug/vaccine design, protein engineering, and cancer research. Existing methods utilize complex neural network structures, diverse input types, and machine learning techniques for feature extraction. However, the growing volume of sequences poses processing challenges. This study introduces KDeep, employing a CNN-LSTM architecture with a novel encoding method called 2Lk. 2Lk enhances prediction accuracy, reduces memory consumption by up to 84%, reduces trainable parameters, and improves interpretability by approximately 79% compared to state-of-the-art approaches. KDeep offers a promising... 

Bio-sequence comparators are one of the most basic and significant methods for assessing biological data, and so, due to the importance of proteins, protein sequence comparators are particularly crucial. On the other hand, the complexity of the problem, the growing number of extracted protein sequences, and the growth of studies and data analysis applications addressing protein sequences have necessitated the development of a rapid and accurate approach to account for the complexities in this field. As a result, we propose a protein sequence comparison approach, called PCV, which improves comparison accuracy by producing vectors that encode sequence data as well as physicochemical properties... 

This work studies the nonlinear oscillations of an elastic rotating shaft with acceleration to pass through the critical speeds. A mathematical model incorporating the Von-Karman higher-order deformations in bending is developed and analyzed to investigate the nonlinear dynamics of rotors. A flexible shaft on flexible bearings with springs and dampers is considered as rotor system for the present work. The shaft is modeled as a beam with a circular cross-section and the Euler Bernoulli beam theory is applied. The kinetic and strain energies of the rotor system are derived and Lagrange method is then applied to obtain the coupled nonlinear differential equations of motion for 6° of freedom.... 

This work studies the nonlinear oscillations of an elastic rotating shaft with acceleration to pass through the critical speeds. A mathematical model incorporating the Von-Karman higher-order deformations in bending is developed and analyzed to investigate the nonlinear dynamics of rotors. A flexible shaft on flexible bearings with springs and dampers is considered as rotor system for the present work. The shaft is modeled as a beam with a circular cross-section and the Euler Bernoulli beam theory is applied. The kinetic and strain energies of the rotor system are derived and Lagrange method is then applied to obtain the coupled nonlinear differential equations of motion for 6° of freedom.... 

This paper is devoted to investigation of morphological and physical-mechanical properties of polyethylene (PE)/clay nanocomposites prepared via in situ polymerization method using bi-supported Ziegler-Natta catalyst. Bentonite type clay and MgCl2 (ethoxide type) were used as the support of TiCl4. Catalyst support and polymerization process have been done in slurry phase using Triisobutylaluminum as the co-catalyst. The microstructure of the nanocomposites was examined by X-ray diffraction (XRD) and transmission electron microscopy (TEM). XRD and TEM indicated that almost fully exfoliated PE/clay nanocomposites were produced successfully using this method. According to permeability... 

Polyvinyl acetate (PVAc) nanocomposites for wood adhesives containing different amounts of colloidal silica nanoparticles (CSNs) were synthesized via in situ one-step emulsion polymerization. The adhesion strength of wood specimens bonded by PVAc nanocomposites was investigated by the tensile test. Thermal properties of PVAc nanocomposites were also characterized by differential scanning calorimetry and thermogravimetric analysis. Rheological and morphological properties of the PVAc nanocomposites were investigated using rheometric mechanical spectrometry and field emission scanning electron microscopy (FESEM), respectively. The obtaining results showed that the shear strength of PVAc... 

Since the efficiency of non-classical continuum theories is strongly dependent on the recognition of the suitable values of small length scale parameters and there is still uncertainty about them, a novel approach, equivalent lattice stiffness method is developed here. This approach without the characteristic length scale parameter which arises in non-classical continuum theories, such as nonlocal theory and strain gradient theory, is capable to capture size effect more easily and accurately. This method is proposed based on the concept of lattice dynamics but a Taylor series expansion is involved to approximate the displacements of the continuous domain; accordingly, this approach is in... 

Since the efficiency of non-classical continuum theories is strongly dependent on the recognition of the suitable values of small length scale parameters and there is still uncertainty about them, a novel approach, equivalent lattice stiffness method is developed here. This approach without the characteristic length scale parameter which arises in non-classical continuum theories, such as nonlocal theory and strain gradient theory, is capable to capture size effect more easily and accurately. This method is proposed based on the concept of lattice dynamics but a Taylor series expansion is involved to approximate the displacements of the continuous domain; accordingly, this approach is in... 

Thermoelastic damping (TED) has been discerned as a definite source of intrinsic energy loss in miniaturized mechanical elements. The size-dependent structural and thermal behavior of these small-sized structures has been proven through experimental observations. As a first attempt, this article exploits nonlocal strain gradient theory (NSGT) and nonlocal dual-phase-lag (NDPL) heat conduction model simultaneously to acquire a mathematical formulation and analytical solution for TED in nanobeams that can accommodate size effect into both structural and heat transfer fields. For this purpose, the coupled equations of motion and heat conduction are firstly extracted via NSGT and NDPL model.... 

This paper utilises flags to decrease the drag around a short finite circular cylinder. Wall-adapted large eddy simulation and two-way fluid–structure interaction methods were applied to resolve unsteady turbulent flow structure. The far-field Reynolds number of the current configuration based on the cylinder diameter was chosen to be 20,000. In addition, the length-to-diameter ratio of the cylinder was assumed to be L/D = 2 whereas the flexible flag had a width-to-diameter ratio of W/D = 1.5. The results were compared with the regular short finite circular cylinder and the rigid flagged cylinder in our previous work. The results indicate that utilising flags inside the near-wake region of... 

Occurrence of drought, as an inevitable natural climate feature, cannot be ceased while happening. However, costs of the consequences could be alleviated using mature scientific integrated approaches. To reduce the amount of damage, it is required to provide “Contingency” and “Mitigation” action plans. For this reason, development of efficient operating instructions for various regions based on weather conditions and field studies is needed as well as having a sophisticated understanding of socioeconomic situations. This paper describes an approach to provide the first national agricultural drought risk management plan for a river basin in Iran country as a pilot. The study lasted for... 

In response to the imperfections of current sequence alignment methods, originated from the inherent serialism within their corresponding electrical systems, a few optical approaches for biological data comparison have been proposed recently. However, due to their low performance, raised from their inefficient coding scheme, this paper presents a novel all-optical high-throughput method for aligning DNA, RNA, and protein sequences, named HELIOS. The HELIOS method employs highly sophisticated operations to locate character matches, single or multiple mutations, and single or multiple indels within various biological sequences. On the other hand, the HELIOS optical architecture exploits... 

The classification of different organisms into subtypes is one of the most important tools of organism studies, and among them, the classification of viruses itself has been the focus of many studies due to their use in virology and epidemiology. Many methods have been proposed to classify viruses, some of which are designed for a specific family of organisms and some of which are more general. But still, especially for certain categories such as Influenza and HIV, classification is facing performance challenges as well as processing and memory bottlenecks. In this way, we designed an automated classifier, called PC-mer, that is based on k-mer and physicochemical characteristics of... 

The synthesis of nanocomposites via in situ grafting polymerization due to its ability to produce polymeric materials with promising microscopic and macroscopic characteristics is becoming very attractive. In this paper, different poly(L-Lactide)-block-poly(ε-caprolactone) (PLLA-b-PCL) copolymers were in situ synthesized in the presence of modified titanium dioxide (TiO2) nanoparticles (mTNP) as the initiator and stannous octoate as the catalyst. The surface of TiO2 was modified by grafting aminopropyl trimethoxy silane to improve initiator efficiency. Copolymers with 90/10, 70/30, and 50/50 mass ratio of L-lactide/ ε-caprolactone and 5 wt% of mTNP (proportional to ε-caprolactone) were... 

Performance of a data center is a function of three features; bandwidth, latency, and reliability. By adopting optical technology in data center network, bandwidth increment, in addition to reduction of transmission latency and power consumption, is achieved. Unfortunately, fault tolerance of the optical networks has raised less attention so far. So in this paper, we propose a fault-tolerant, scalable, and high-performance optical architecture built upon previously proposed O-TF network, with the goal of redundancy optimization and reducing the minimum number of wavelength channels required for non-blocking functionality of the network. Moreover, reducing network diameter, in O-FTF network... 

Data center performance is affected by three main factors; bandwidth, latency, and reliability of intra-data center interconnection network. Bandwidth and latency are definitely improved by adopting optical technology for intra-data center communication, but fault tolerance of the corresponding optical networks has been raised less. Recently, we introduced two Torus-based, all-optical, and non-blocking networks, i.e. O-TF and O-FTF, addressing reliability of optical networks, and now, in this paper, to address the scalability problem, we propose a novel Optical Clos-based architecture which reduces minimum number of required wavelength channels, as well as, the switch size in each node.... 

This study aims at investigation of the resonance frequencies of carbon nanopeapods constructed by a single wall carbon nanotube and encapsulated buckyball molecules (C60). A nanopeapod can be used as a nanoscale variable frequency beam resonator according to the number and positions of the encapsulated fullerenes. Using the molecular structural mechanics method the covalence bonds are simulated by equivalent beam elements and the van der Waal interactions between the buckyballs and nanotube are modeled as linear springs. Also, an equivalent beam model is proposed for the nanopeapod with sectional properties which are obtained by the molecular structural mechanics model. The beam-like modes...