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    An Introduction to Cosmology from the Koran Point of View, Philosophy and Science

    , M.Sc. Thesis Sharif University of Technology Mehrali, Akram (Author) ; Kalbasi, Hossein (Supervisor)
    Abstract
    Cosmology is a knowledge that deals with the matter of creation of the world, its current structure and its end. This scientific field that was a subject discussed by the scientific, philosophical and religious groups has nowadays taken the attention of many scientists and researchers. The philosophers of science, also, are not exemptions from theses groups and cosmology, as a topic common between philosophy and science, is one of the points that are under discussion in the field of philosophy of science. On the other hand, the religions, also, have noticed this issue. Koran that is the most complete divine book sent from God, has taken account of the creation and the Creator as the axis of... 

    On the relaxed maximum-likelihood blind MIMO channel estimation for orthogonal space-time block codes

    , Article Signal Processing ; Volume 175 , October , 2020 Kalbasi, K ; Golestani, S. J ; Sharif University of Technology
    Elsevier B. V  2020
    Abstract
    This paper concerns the maximum-likelihood channel estimation for MIMO systems with orthogonal space-time block codes when the finite alphabet constraint of the signal constellation is relaxed. We study the channel coefficients estimation subspace generated by this method. We provide an algebraic characterisation of this subspace which turns the optimization problem into a purely algebraic one and more importantly, leads to several interesting analytical proofs. We prove that with probability one, the dimension of the estimation subspace for the channel coefficients is deterministic and it decreases by increasing the number of receive antennas up to a certain critical number of receive... 

    Medical Image Registration using Self-Supervised Learning

    , M.Sc. Thesis Sharif University of Technology Kalbasi, Mohammad (Author) ; Fatemizadeh, Emadoddin (Supervisor)
    Abstract
    Image registration is fundamental in medical imaging, enabling the accurate alignment and analysis of images from different modalities. This process is essential for various applications, including the assessment of tissue growth and tumor evolution, preoperative and intraoperative planning, and segmentation. While recent advances in deep learning have improved unsupervised monomodal medical image registration, these methods typically rely on transforming images and computing a similarity loss function between the transformed and target images. However, for multimodal image registration, traditional similarity functions often lack expressiveness and are prone to numerous local optima. To... 

    Optimum power allocation in parallel poisson optical channel

    , Article 2009 10th International Conference on Telecommunications, ConTEL 2009, Zagreb, 8 June 2009 through 10 June 2009 ; 2009 , Pages 285-288 ; 9789531841313 (ISBN) Alem Karladani, M. M ; Sepahi, L ; Jazayerifar, M ; Kalbasi, K ; Sharif University of Technology
    2009
    Abstract
    In this paper we investigate the Shannon capacity of single and parallel Poisson channels in different scenarios. At first, by examining the capacity equation of the single Poisson channel, the minimum average power that maximizes the capacity is found. Then, applying the method of Lagrange multipliers on the capacity expression of the parallel Poisson channel, we obtain the optimum power allocation maximizing the parallel Poisson channel capacity  

    Optical assays based on colloidal inorganic nanoparticles

    , Article Analyst ; Volume 143, Issue 14 , 2018 , Pages 3249-3283 ; 00032654 (ISSN) Ghasemi, A ; Rabiee, N ; Ahmadi, S ; Hashemzadeh, S ; Lolasi, F ; Bozorgomid, M ; Kalbasi, A ; Nasseri, B ; Shiralizadeh Dezfuli, A ; Aref, A. R ; Karimi, M ; Hamblin, M. R ; Sharif University of Technology
    Royal Society of Chemistry  2018
    Abstract
    Colloidal inorganic nanoparticles have wide applications in the detection of analytes and in biological assays. A large number of these assays rely on the ability of gold nanoparticles (AuNPs, in the 20 nm diameter size range) to undergo a color change from red to blue upon aggregation. AuNP assays can be based on cross-linking, non-cross linking or unmodified charge-based aggregation. Nucleic acid-based probes, monoclonal antibodies, and molecular-affinity agents can be attached by covalent or non-covalent means. Surface plasmon resonance and SERS techniques can be utilized. Silver NPs also have attractive optical properties (higher extinction coefficient). Combinations of AuNPs and AgNPs... 

    Applications of innovation technologies for personalized cancer medicine: stem cells and gene-editing tools

    , Article ACS Pharmacology and Translational Science ; Volume 6, Issue 12 , 2023 , Pages 1758-1779 ; 25759108 (ISSN) Hasanzadeh, A ; Ebadati, A ; Dastanpour, L ; Aref, A. R ; Sahandi Zangabad, P ; Kalbasi, A ; Dai, X ; Mehta, G ; Ghasemi, A ; Fatahi, Y ; Joshi, S ; Hamblin, M. R ; Karimi, M ; Sharif University of Technology
    American Chemical Society  2023
    Abstract
    Personalized medicine is a new approach toward safer and even cheaper treatments with minimal side effects and toxicity. Planning a therapy based on individual properties causes an effective result in a patient’s treatment, especially in a complex disease such as cancer. The benefits of personalized medicine include not only early diagnosis with high accuracy but also a more appropriate and effective therapeutic approach based on the unique clinical, genetic, and epigenetic features and biomarker profiles of a specific patient’s disease. In order to achieve personalized cancer therapy, understanding cancer biology plays an important role. One of the crucial applications of personalized... 

    Finding the best station in Belgium to use residential-scale solar heating, One-year dynamic simulation with considering all system losses: Economic analysis of using ETSW

    , Article Sustainable Energy Technologies and Assessments ; Volume 45 , June , 2021 ; 22131388 (ISSN) Kalbasi, R ; Jahangiri, M ; Mosavi, A ; Jalaladdin Hosseini Dehshiri, S ; Shahabaddin Hosseini Dehshiri, S ; Ebrahimi, S ; Al Sadat Etezadi, Z ; Karimipour, A ; Sharif University of Technology
    Elsevier Ltd  2021
    Abstract
    The main purpose of this study is to provide the heating power for space heating and sanitary hot water for a residential house in sixteen stations located in Belgium using evacuated tube solar water (ETSW). A one-year dynamic simulation was performed using TSOL 5.5 software and Meteonorm 7.1 was used to obtain the climatic data. Technical and environmental studies as well as station rankings are the parameters that have been examined for the first time in the present study. The weighting results of using the Best-Worst method (BWM) revealed that total solar fraction and CO2 emission avoided have the highest and lowest weight, respectively. Station ranking was performed using ARAS technique... 

    Network vulnerability analysis through vulnerability take-grant model (VTG)

    , Article 7th International Conference on Information and Communications Security, ICICS 2005, Beijing, 10 December 2005 through 13 December 2005 ; Volume 3783 LNCS , 2005 , Pages 256-268 ; 03029743 (ISSN); 3540309349 (ISBN); 9783540309345 (ISBN) Shahriari, H. R ; Sadoddin, R ; Jalili, R ; Zakeri, R ; Omidian, A. R ; Sharif University of Technology
    2005
    Abstract
    Modeling and analysis of information system vulnerabilities helps us to predict possible attacks to networks using the network configuration and vulnerabilities information. As a fact, exploiting most of vulnerabilities result in access rights alteration. In this paper, we propose a new vulnerability analysis method based on the Take-Grant protection model. We extend the initial Take-Grant model to address the notion of vulnerabilities and introduce the vulnerabilities rewriting rules to specify how the protection state of the system can be changed by exploiting vulnerabilities. Our analysis is based on a bounded polynomial algorithm, which generates the closure of the Take-Grant graph... 

    Sequence dependence of the binding energy in chaperone-driven polymer translocation through a nanopore

    , Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 83, Issue 1 , January , 2011 ; 15393755 (ISSN) Abdolvahab, R. H ; Ejtehadi, M. R ; Metzler, R ; Sharif University of Technology
    2011
    Abstract
    We study the translocation of stiff polymers through a nanopore, driven by the chemical-potential gradient exerted by binding proteins (chaperones) on the trans side of the pore. Bound chaperones prevent backsliding through the pore and, therefore, partially rectify the polymer passage. We show that the sequence of chain monomers with different binding affinity for the chaperones significantly affects the translocation dynamics. In particular, we investigate the effect of the nearest-neighbor adjacency probability of the two monomer types. Depending on the magnitude of the involved binding energies, the translocation speed may either increase or decrease with the adjacency probability. We... 

    First passage time distribution of chaperone driven polymer translocation through a nanopore: Homopolymer and heteropolymer cases

    , Article Journal of Chemical Physics ; Volume 135, Issue 24 , 2011 ; 00219606 (ISSN) Abdolvahab, R. H ; Metzler, R ; Ejtehadi, M. R ; Sharif University of Technology
    2011
    Abstract
    Combining the advection-diffusion equation approach with Monte Carlo simulations we study chaperone driven polymer translocation of a stiff polymer through a nanopore. We demonstrate that the probability density function of first passage times across the pore depends solely on the Péclet number, a dimensionless parameter comparing drift strength and diffusivity. Moreover it is shown that the characteristic exponent in the power-law dependence of the translocation time on the chain length, a function of the chaperone-polymer binding energy, the chaperone concentration, and the chain length, is also effectively determined by the Péclet number. We investigate the effect of the chaperone size on... 

    Reply: Abedpour, asgari, and tabar

    , Article Physical Review Letters ; Volume 106, Issue 20 , 2011 ; 00319007 (ISSN) Abedpour, N ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
    2011

    Irreversibility in response to forces acting on graphene sheets

    , Article Physical Review Letters ; Volume 104, Issue 19 , May , 2010 ; 00319007 (ISSN) Abedpour, N ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
    2010
    Abstract
    The amount of rippling in graphene sheets is related to the interactions with the substrate or with the suspending structure. Here, we report on an irreversibility in the response to forces that act on suspended graphene sheets. This may explain why one always observes a ripple structure on suspended graphene. We show that a compression-relaxation mechanism produces static ripples on graphene sheets and determine a peculiar temperature Tc, such that for T

    Analysis of design goals of cryptography algorithms based on different components

    , Article Indonesian Journal of Electrical Engineering and Computer Science ; Volume 23, Issue 1 , 2021 , Pages 540-548 ; 25024752 (ISSN) Molk, A.M.N.G ; Aref, M. R ; Khorshiddoust, R. R ; Sharif University of Technology
    Institute of Advanced Engineering and Science  2021
    Abstract
    Cryptography algorithms are a fundamental part of a cryptographic system that is designed and implemented to increase information security. They are the center of attention of experts in the information technology domains. Although the cryptography algorithms are implemented to attain the goals such as confidentially, integrity, and authenticity of designing, but other matters that must be noticed by designers include speed, resource consumption, reliability, flexibility, usage type, and so on. For the useful allocation of hardware, software, and human resources, it is important to identify the role of each of the factors influencing the design of cryptographic algorithms to invest in the... 

    Conservation of statistical results under the reduction of pair-contact interactions to solvation interactions

    , Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 72, Issue 6 , 2005 ; 15393755 (ISSN) Radja, N.H ; Farzami, R. R ; Ejtehadi, M. R ; Sharif University of Technology
    2005
    Abstract
    We show that the hydrophobicity of sequences is the leading term in Miyazawa-Jernigan interactions. Being the source of additive (solvation) terms in pair-contact interactions, they were used to reduce the energy parameters while resulting in a clear vector manipulation of energy. The reduced (additive) potential performs considerably successful in predicting the statistical properties of arbitrary structures. The evaluated designabilities of the structures by both models are highly correlated. Suggesting geometrically nondegenerate vectors (structures) as proteinlike structures, the additive model is a powerful tool for protein design. Moreover, a crossing point in the log-linear diagram of... 

    Multifunctional hyperelastic structured surface for tunable and switchable transparency

    , Article Applied Sciences (Switzerland) ; Volume 11, Issue 5 , 2021 , Pages 1-11 ; 20763417 (ISSN) Mahabadi, R. K ; Goudarzi, T ; Fleury, R ; Naghdabadi, R ; Sharif University of Technology
    MDPI AG  2021
    Abstract
    We leverage the crucial hyperelastic properties of a multifunctional structured surface to optimize the reconfigurability of the electromagnetic transmission under large nonlinear mechanical deformations. This multiphysics, multifunctional, hyperelastic structured surface (HSS) offers two simultaneous intriguing functionalities; tunability and switchability. It is made of copper reso-nators and a Polydimethylsiloxane (PDMS) substrate, which is one of the most favorable deformable substrates due to its hyperelastic behavior. The proposed HSS is fabricated via an original cost-effective technique and the multiphysics functionalities are captured in both experimental tests and numerical... 

    MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments

    , Article PLoS Computational Biology ; Volume 18, Issue 6 , 2022 ; 1553734X (ISSN) Alinejad Rokny, H ; Modegh, R. G ; Rabiee, H. R ; Sarbandi, E. R ; Rezaie, N ; Tam, K. T ; Forrest, A. R. R ; Sharif University of Technology
    Public Library of Science  2022
    Abstract
    Hi-C is a genome-wide chromosome conformation capture technology that detects interactions between pairs of genomic regions and exploits higher order chromatin structures. Conceptually Hi-C data counts interaction frequencies between every position in the genome and every other position. Biologically functional interactions are expected to occur more frequently than transient background and artefactual interactions. To identify biologically relevant interactions, several background models that take biases such as distance, GC content and mappability into account have been proposed. Here we introduce MaxHiC, a background correction tool that deals with these complex biases and robustly... 

    SER of M-PSK modulation in incremental-selective decode-and-forward cooperative communications over Rayleigh fading channels

    , Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 432-437 ; 17389445 (ISSN) ; 9788955191554 (ISBN) Renani, R. A ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
    2011
    Abstract
    In this paper we consider a cooperative communication systems over Rayleigh fading channels. The system utilizes a combination of incremental and selective decode-and-forward (ISDF) relaying protocols. The symbol error rate (SER) of M-PSK modulation for the ISDF protocol is derived. Using an approximation of the SER expression, the optimal power allocation is investigated. In order to reduce the complexity of the receiver, we used a modified version of the ISDF protocol which does not use the storage or retransmission of the first phase signal. We also derived optimal power allocation coefficient for modified ISDF. It has been noted that for the optimal power allocation in the ISDF protocol,... 

    Power allocation for incremental-selective decode-and-forward cooperative communications over Rician fading channels

    , Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 730-734 ; 17389445 (ISSN) ; 9788955191554 (ISBN) Renani, R. A ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
    2011
    Abstract
    In this paper we consider a relaying communication system over Rician fading channels. In this system we assume simple Incremental-Selective Decode-and-Forward (ISDF) protocol, which is jointly combining incremental and selective DF relaying protocols. In this protocol, storage or retransmission of the first phase signal are not allowed. We analyze the symbol error rate (SER) performance of the recommended protocol with M-PSK modulation. We evaluate the performance of the protocol in the frequency nonselective slow Rician fading channels. Using the approximation of the SER expression, the optimal power allocation is investigated. Our results show that at least 50% of total power must be used... 

    Efficient and practical protocol for silylation of hydroxyl groups using reusable lithium perchlorate dispread in silica gel under neutral condition [electronic resource]

    , Article Journal of Organometallic Chemistry ; 2006, Volume 691, Issue 5, Pages 817–820 Azizi, N. (Najmodin) ; Yousefi, R ; Saidi, M. R ; Sharif University of Technology
    Abstract
    A very efficient and mild procedure for the trimethylsilylation of a wide variety of alcohols, including primary, allylic, benzylic, secondary, hindered secondary, tertiary, and phenols with hexamethyldisilazane on the surface of silica gel dispersed with LiClO4 in room temperature at few minutes in excellent yields under neutral conditions is reported. This procedure also allows the excellent selectivity under LP-SiO2 system for silylation of alcohols in the presence of amine and phenolic hydroxy groups  

    Modeling, estimation, and model predictive control for Covid-19 pandemic with finite security duration vaccine

    , Article 30th International Conference on Electrical Engineering, ICEE 2022, 17 May 2022 through 19 May 2022 ; 2022 , Pages 78-83 ; 9781665480871 (ISBN) Delavar, A ; Baghbadorani, R. R ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2022
    Abstract
    Spreading Covid19 has significantly impacted humans' affairs worldwide, either economically or in a sanitary manner. Besides social distance and hospitalization, making and introducing different vaccines help us ameliorate infection and mortality rates. In this research, we use a nonlinear dynamic model for Covid19, with eight states named susceptible, exposed, infected, quarantined, hospitalized, recovered, deceased, and insusceptible populations. Also, we use social distancing, hospitalization, and vaccination rate as three control inputs. This research aims to stop the Covid-19 from spreading worldwide and minimize exposed, infected and deceased populations using model predictive control....