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    , M.Sc. Thesis Sharif University of Technology Omrani, Reza (Author) ; Vaziri, Manouchehr (Supervisor)
    Abstract
    As petroleum resources are not steadily distributed in the world and all industries and manufacturing sections are dependent on these resources, petroleum transportation is very important to the extent that availability of these resources occurs in the fastest time and costing the least possible. The objective of this study is to study the petroleum distribution through time in the world and assess its transportation efficacy during 1965-2005 in 173 countries. Collecting information about petroleum distribution between exporting countries to importing ones helped to complete the study data base. Also in this study two transportation networks, sea and land multimodal transportation network... 

    Photo-induced growth of silver nanoparticles using UV sensitivity of cellulose fibers

    , Article Applied Surface Science ; Volume 258, Issue 7 , 2012 , Pages 2373-2377 ; 01694332 (ISSN) Omrani, A. A ; Taghavinia, N ; Sharif University of Technology
    2012
    Abstract
    A simple method has been demonstrated to grow silver nanoparticles on the surface of cellulose fibers. The preparation is based on photo-activation of surface by ultraviolet (UV) photons, followed by chemical reduction of silver nitrate. It is found that the concentration of silver nitrate in the solution is not a determining factor, while UV intensity affects the rate of initial growth and determines the final concentration of the loaded silver. We explain the phenomena based on a model including the number of reducing sites on the surface of cellulose fibers activated by UV photons, and a release mechanism that causes a slow rate of dissolution of silver back into the solution  

    Abnormal expression of NF-κB-related transcripts in blood of patients with inflammatory peripheral nerve disorders

    , Article Metabolic Brain Disease ; Volume 36, Issue 8 , 2021 , Pages 2369-2376 ; 08857490 (ISSN) Azimi, T ; Ghafouri Fard, S ; Badrlou, E ; Omrani, D ; Nazer, N ; Sayad, A ; Taheri, M ; Sharif University of Technology
    Springer  2021
    Abstract
    The NF-κB family includes some transcription factors which have important functions in the regulation of immune responses, therefore participating in the pathophysiology of inflammatory conditions such as peripheral neuropathies. We have quantified expression of a number of NF-κB-related transcripts in patients with Guillain-Barré syndrome (GBS) or chronic inflammatory demyelinating polyneuropathy (CIDP) versus healthy subjects. These transcripts have been previously shown to be functionally related with this family of transcription factors. Expressions of ATG5, DICER-AS1, PACER, DILC, NKILA and ADINR have been increased in both CIDP and GBS patients compared with controls. However,... 

    Effect of permeability heterogeneity on the dissolution process during carbon dioxide sequestration in saline aquifers: two-and three-dimensional structures

    , Article Geomechanics and Geophysics for Geo-Energy and Geo-Resources ; Volume 8, Issue 2 , 2022 ; 23638419 (ISSN) Mahyapour, R ; Mahmoodpour, S ; Singh, M ; Omrani, S ; Sharif University of Technology
    Springer Science and Business Media Deutschland GmbH  2022
    Abstract
    Abstract: The convection–diffusion process of carbon dioxide (CO2) dissolution in a saline reservoir is investigated to shed light on the effects of the permeability heterogeneity. Using sequential Gaussian simulation method, random permeability fields in two and three-dimension (2D and 3D) structures are generated. Quantitative (average amount of the dissolved CO2 and dissolution flux) and qualitative (pattern of the dissolved CO2 and velocity streamlines) measurements are used to investigate the results. A 3D structure shows a slightly higher dissolution flux than a 2D structure in the homogeneous condition. Results in the random permeability fields in 2D indicates an increase in the... 

    A novel equation to calculate primary drainage capillary pressure based on a porous plate model: Theory and application

    , Article Chemical Engineering Research and Design ; Volume 195 , 2023 , Pages 247-259 ; 02638762 (ISSN) Omrani, H ; Hajipour, M ; Jamshidi, S ; Behnood, M ; Sharif University of Technology
    Institution of Chemical Engineers  2023
    Abstract
    This study aims to develop an equation for primary drainage capillary pressure as a function of water saturation based on the porous plate model. Several empirical and semiempirical equations are available to calculate Pc-Sw. The results of the previous equations are not ideal, so this is an attempt to present an accurate equation to calculate Pc-Sw based on governing theoretical physical analysis to describe two-phase immiscible displacement flow in porous media. Volumetric flow rates through the core plug and porous plate are applied to calculate the transport phenomena in porous media. The equation is derived from mass and momentum transfer through a core plug, and Darcy's law is applied... 

    A new method in reservoir rock classification in carbonate and sandstone formations

    , Article Journal of Geophysics and Engineering ; Volume 20, Issue 4 , 2023 , Pages 883-900 ; 17422132 (ISSN) Omrani, H ; Hajipour, M ; Jamshidi, S ; Behnood, M ; Sharif University of Technology
    Oxford University Press  2023
    Abstract
    This study aims to improve rock-type classification by analyzing core data based on the water-oil primary drainage capillary pressure method. A modified empirical equation is proposed using permeability, porosity, and irreducible water saturation to classify rock types based on water-oil primary drainage capillary pressure. We used primary drainage capillary pressure data measured in carbonate and sandstone samples in the Ahvaz Asmari and Mansouri oilfields to evaluate the characterization number (Cn) method. This study consists of two main parts. First, the Cn method is introduced to rock typing, and the permeability is calculated from well log data. In the second part, we present rock-type... 

    Numerical simulation of carbon dioxide–nitrogen mixture dissolution in water-saturated porous media: considering cross-diffusion effects

    , Article Fluids ; Volume 8, Issue 1 , 2023 ; 23115521 (ISSN) Mahmoodpour, S ; Singh, M ; Mahyapour, R ; Omrani, S ; Sass, I ; Sharif University of Technology
    MDPI  2023
    Abstract
    Highlights: 1. What are the main findings? CO2–N2 mixture dissolution in brine is examined by considering the cross-diffusion effect for CO2 sequestration in a deep storage reservoir. Heterogeneity lowers the average dissolved CO2 and impedes the onset of convection. 2. What is the implication of the main finding? Correlations are developed to predict the transition time between the dissolution regimes. The possibility of impure carbon dioxide (CO2) sequestration can reduce the cost of these projects and facilitate their widespread adoption. Despite this, there are a limited number of studies that address impure CO2 sequestration aspects. In this study, we examine the convection–diffusion... 

    The effects of homogenization time and cooling environment on microstructure and transformation temperatures of Ni-42.5wt%Ti-7.5wt%Cu alloy

    , Article Defect and Diffusion Forum ; Volume 297-301 , 2010 , Pages 344-350 ; 10120386 (ISSN); 3908451809 (ISBN); 9783908451808 (ISBN) Omrani, E ; Shokuhfar, A ; Etaati, A ; Dorri M., A ; Saatian, A ; Sharif University of Technology
    Trans Tech Publications Ltd  2010
    Abstract
    The present paper deals with different effects of homogenization time and cooling environment on Ni-42.5wt%Ti-7.5wt%Cu alloy. The alloy was prepared by vacuum arc melting. Afterwards, three homogenization times (half, one and two hour) and three cooling environments (water, air and furnace) at 1373 K were selected. Optical and Scanning Electron Microscopic methods, EDX, DSC and hardness tests have been used to evaluate the microstructure, transformation temperatures and hardness. Results indicate that specimens that were cooled in air are super-saturated. Also, the microstructure from furnace cooling has many disparities with the other cooling environments' microstructure and two types of... 

    Application of artificial neural network for prediction of risk of multiple sclerosis based on single nucleotide polymorphism genotypes

    , Article Journal of Molecular Neuroscience ; Volume 70, Issue 7 , 2020 , Pages 1081-1087 Ghafouri-Fard, S ; Taheri, M ; Omrani, M. D ; Daaee, A ; Mohammad Rahimi, H ; Sharif University of Technology
    Humana Press Inc  2020
    Abstract
    The artificial neural network (ANN) is a sort of machine learning method which has been used in determination of risk of human disorders. In the current investigation, we have created an ANN and trained it based on the genetic data of 401 multiple sclerosis (MS) patients and 390 healthy subjects. Single nucleotide polymorphisms (SNPs) within ANRIL (rs1333045, rs1333048, rs4977574 and rs10757278), EVI5 (rs6680578, rs10735781 and rs11810217), ACE (rs4359 and rs1799752), MALAT1 (rs619586 and rs3200401), GAS5 (rs2067079 and rs6790), H19 (rs2839698 and rs217727), NINJ2 (rs11833579 and rs3809263), GRM7 (rs6782011 and rs779867), VLA4 (rs1143676), CBLB (rs12487066) and VEGFA (rs3025039 and... 

    Expression analysis of cytokine transcripts in inflammatory demyelinating polyradiculoneuropathy

    , Article Metabolic Brain Disease ; Volume 36, Issue 7 , 2021 , Pages 2111-2118 ; 08857490 (ISSN) Nicknafs, F ; Ghafouri Fard, S ; Omrani, M. D ; Nazer, N ; Sayad, A ; Taheri, M ; Sharif University of Technology
    Springer  2021
    Abstract
    Inflammatory demyelinating polyradiculoneuropathies are a group of peripheral nerve system disorders in which immune reactions are dysregulated. Cytokines have noticeable roles in the regulation of these responses. We compared transcript levels of nine cytokine coding genes namely IL-1B, IL-2, IL-4, IL-6, IL-8, IL-17A, IFN-G, TGF-B and TNF-A in the peripheral blood of patients with acute and chronic kinds of this condition (AIDP and CIDP) and healthy persons. Expression of IL-17A was significantly lower in female AIDP cases compared with female controls (Expression Ratio = 0.02, P value = 0.02). Expression of this cytokine was higher in female CIDP cases compared with female AIDP cases... 

    Application of single-nucleotide polymorphisms in the diagnosis of autism spectrum disorders: a preliminary study with artificial neural networks

    , Article Journal of Molecular Neuroscience ; Volume 68, Issue 4 , 2019 , Pages 515-521 ; 08958696 (ISSN) Ghafouri Fard, S ; Taheri, M ; Omrani, M. D ; Daaee, A ; Mohammad Rahimi, H ; Kazazi, H ; Sharif University of Technology
    Springer New York LLC  2019
    Abstract
    Autism spectrum disorder (ASD) includes different neurodevelopmental disorders characterized by deficits in social communication, and restricted, repetitive patterns of behavior, interests or activities. Based on the importance of early diagnosis for effective therapeutic intervention, several strategies have been employed for detection of the disorder. The artificial neural network (ANN) as a type of machine learning method is a common strategy. In the current study, we extracted genomic data for 487 ASD patients and 455 healthy individuals. All individuals were genotyped in certain single-nucleotide polymorphisms within retinoic acid-related orphan receptor alpha (RORA), gamma-aminobutyric... 

    A Coupling Atomistic-continuum Approach for Modeling Dislocation in Plastic Behavior of Nano-structures

    , M.Sc. Thesis Sharif University of Technology Omrani Pournava, Amir Mohsen (Author) ; Khoei, Amir Reza (Supervisor) ; Jahanshahi, Mohsan (Co-Advisor)
    Abstract
    In this study, a novel multi-scale hierarchical method has been employed to explore the role of edge dislocation on Nano-plates with hexagonal atomic structure in large deformation. multiscale hierarchical atomistic/molecular dynamics (MD) finite element (FE) coupling methods are proposed to demonstrate the impact of dislocation on mechanical properties of Magnesium in large deformation. The atomic nonlinear elastic parameters are attained via computing first-order derivation of stress with respect to strain of Representative Volume Element (RVE). To associate between atomistic and continuum level, the mechanical characteristics are captured in the atomistic scale and transferred to the... 

    Opposite trends of GAS6 and GAS6-AS expressions in breast cancer tissues

    , Article Experimental and Molecular Pathology ; Volume 118 , 2021 ; 00144800 (ISSN) Lavasani, A ; Hussen, B. M ; Taheri, F ; Sattari, A ; Yousefi, H ; Omrani, M. D ; Nazer, N ; Ghafouri Fard, S ; Taheri, M ; Sharif University of Technology
    Academic Press Inc  2021
    Abstract
    Growth arrest-specific gene 6 (GAS6) is a growth factor-like cytokine whose function is related with vitamin K. This protein interacts with receptor tyrosine kinase proteins such as Tyro3, Axl, and TAM Receptor family, therefore affecting the tumorigenic processes via different mechanisms. GAS6-antisense 1 (GAS6-AS1) is a long non-coding RNAs (lncRNAs) that is transcribed from a genomic regions nearby GAS6. This lncRNA is also implicated in the pathobiology of cancer. We intended to judge the role of GAS6 and GAS6-AS1 in the pathogenesis of breast cancer through appraisal of their expression levels in breast cancer tissues and their paired neighboring non-cancerous samples. Expression of... 

    Molecular interaction of fibrinogen with zeolite nanoparticles

    , Article Scientific Reports ; Volume 9, Issue 1 , 2019 ; 20452322 (ISSN) Derakhshankhah, H ; Hosseini, A ; Taghavi, F ; Jafari, S ; Lotfabadi, A ; Ejtehadi, M. R ; Shahbazi, S ; Fattahi, A ; Ghasemi, A ; Barzegari, E ; Evini, M ; Saboury, A. A ; Shahri, S. M. K ; Ghaemi, B ; Ng, E. P ; Awala, H ; Omrani, F ; Nabipour, I ; Raoufi, M ; Dinarvand, R ; shahpasand, K ; Mintova, S ; Hajipour, M. J ; Mahmoudi, M ; Sharif University of Technology
    Nature Publishing Group  2019
    Abstract
    Fibrinogen is one of the key proteins that participate in the protein corona composition of many types of nanoparticles (NPs), and its conformational changes are crucial for activation of immune systems. Recently, we demonstrated that the fibrinogen highly contributed in the protein corona composition at the surface of zeolite nanoparticles. Therefore, understanding the interaction of fibrinogen with zeolite nanoparticles in more details could shed light of their safe applications in medicine. Thus, we probed the molecular interactions between fibrinogen and zeolite nanoparticles using both experimental and simulation approaches. The results indicated that fibrinogen has a strong and... 

    Dose-dependent effects of nanoscale graphene oxide on reproduction capability of mammals

    , Article Carbon ; Volume 95 , December , 2015 , Pages 309-317 ; 00086223 (ISSN) Akhavan, O ; Ghaderi, E ; Hashemi, E ; Akbari, E ; Sharif University of Technology
    Elsevier Ltd  2015
    Abstract
    In vivo dose-dependent effects of nanoscale graphene oxide (NGO) sheets on reproduction capability of Balb/C mice were investigated. Biodistribution study of the NGO sheets (intravenously injected into male mice at dose of ∼2000 μg/mL or 4 mg/kg of body weight) showed a high graphene uptake in testis. Hence, in vivo effects of the NGO sheets on important characteristics of spermatozoa (including their viability, morphology, kinetics, DNA damage and chromosomal aberration) were evaluated. Significant in vivo effects was found at the injected concentrations ≥200 μg/mL after (e.g., ∼45% reduction in sperm viability and motility at 2000 μg/mL). Observation of remarkable DNA fragmentations and... 

    Accelerated differentiation of neural stem cells into neurons on ginseng-reduced graphene oxide sheets

    , Article Carbon ; Volume 66 , January , 2014 , Pages 395-406 Akhavan, O ; Ghaderi, E ; Abouei, E ; Hatamie, S ; Ghasemi, E ; Sharif University of Technology
    2014
    Abstract
    Asian red ginseng was used for green reduction of chemically exfoliated graphene oxide (GO) into reduced graphene oxide (rGO). The reduction level and electrical conductivity of the ginseng-rGO sheets were comparable to those of hydrazine-rGO ones. Reduction by ginseng resulted in repairing the sp 2 graphitic structure of the rGO, while hydrazine-rGO showed more defects and/or smaller aromatic domains. The ginseng-rGO sheets presented a better stability against aggregation than the hydrazine-rGO ones in an aqueous suspension. Whilst the hydrophobic hydrazine-rGO films exhibited no toxicity against human neural stem cells (hNSCs), the hydrophilic GO and ginseng-rGO films (as more... 

    Contested framings and policy controversies: Analysing biosafety policy-making in Iran

    , Article Science and Public Policy ; Volume 40, Issue 5 , 2013 , Pages 616-627 ; 03023427 (ISSN) Kashani, E. S ; Millstone, E ; Sharif University of Technology
    2013
    Abstract
    Vigorous debates have taken place within and between many countries about regulatory policy regimes covering the assessment and approval of genetically modified (GM) crops. In Iran, a very vigorous and hotly contested policy debate concerning legislation covering GM crops occurred between 2004 and 2009, but it was confined within government circles with almost no public discussion. This paper analyses the Iranian policy-making process in the period 2006-9. It explains how and why a stalemate arose in disputes between ministries and departments. The chosen analytical framework draws mainly on the regulation of technological risks and the analysis of public policy-making. It deploys the... 

    On the possible volumes of μ-way latin trades

    , Article Aequationes Mathematicae ; Volume 63, Issue 3 , 2002 , Pages 303-320 ; 00019054 (ISSN) Adams, P ; Billington, E. J ; Bryant, D. E ; Mahmoodian, E. S ; Sharif University of Technology
    Birkhauser Verlag Basel  2002
    Abstract
    A μ-way latin trade of volume s is a set of μ partial latin rectangles (of inconsequential size) containing exactly the same s filled cells, such that if cell (i, j) is filled, it contains a different entry in each of the μ partial latin rectangles, and such that row i in each of the μ partial latin rectangles contains, set-wise, the same symbols and column j, likewise. In this paper we show that all μ-way latin trades with sufficiently large volumes exist, and state some theorems on the non-existence of μ-way latin trades of certain volumes. We also find the set of possible volumes (that is, the volume spectrum) of μ-way latin trades for μ = 4 and 5. (The case μ = 2 was dealt with by Fu,... 

    The three-way intersection problem for latin squares

    , Article Discrete Mathematics ; Volume 243, Issue 1-3 , 2002 , Pages 1-19 ; 0012365X (ISSN) Adams, P ; Billington, E. J ; Bryant, D. E ; Mahmoodian, E. S ; Sharif University of Technology
    2002
    Abstract
    The set of integers k for which there exist three latin squares of order n having precisely k cells identical, with their remaining n2 -k cells different in all three latin squares, denoted by I3[n], is determined here for all orders n. In particular, it is shown that I3[n] = {0,.,n2 -15}U [n2 - 12,n2-9,n2], for n ≫8. ©2002 Eisevier Science B.V. All rights reserved  

    Integration of spatial fuzzy clustering with level set for segmentation of 2-D angiogram

    , Article IECBES 2014, Conference Proceedings - 2014 IEEE Conference on Biomedical Engineering and Sciences: "Miri, Where Engineering in Medicine and Biology and Humanity Meet", 8 December 2014 through 10 December 2014 ; December , 2015 , Pages 309-314 ; 9781479940844 (ISBN) Ghalehnovi, M ; Zahedi, E ; Fatemizadeh, E ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2015
    Abstract
    Coronary angiography is a vital instrument to detect the prevailing of vascular diseases, and accurate vascular segmentation acts a crucial role for proper quantitative analysis of the vascular tree morphological features. Level set methods are popular for segmenting the coronary arteries, but their performance is related to suitable start-up and optimum setting of regulating parameters, essentially done manually. This research presents a novel fuzzy level set procedure with the objective of segmentation of the coronary artery tree in 2-D X-ray angiography as automatically. It is clever to clearly develop from the early segmentation with spatial fuzzy grouping. The adjusting parameters of...