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    Enzymes : catalysis, kinetics and mechanisms

    , Book Punekar, N. S
    Springer  [2018]

    DNA binding and recognition of a CC mismatch in a DNA duplex by water-soluble peptidocalix[4]arenes: synthesis and applications

    , Article Organic Letters ; Volume 18, Issue 19 , 2016 , Pages 4766-4769 ; 15237060 (ISSN) Alavijeh, N. S ; Zadmard, R ; Balalaie, S ; Alavijeh, M. S ; Soltani, N ; Sharif University of Technology
    American Chemical Society  2016
    Abstract
    Water-soluble peptidocalix[4]arenes were synthesized by the introduction of arginine-rich narrow groove-binding residues at lower rims through solid-phase synthesis. The study of binding of these water-soluble bidentate ligands to well-matched and mismatched DNA duplexes by fluorescent titrations, ethidium bromide (EB) displacement assays, DNA-melting experiments, and circular dichroism (CD) analysis revealed a sequence-dependent groove-binding mechanism  

    A meta user interface for interaction with mixed reality environments

    , Article 2015 IEEE International Symposium on Haptic, Audio and Visual Environments and Games, HAVE 2015 - Proceedings, 11 October 2015 ; October , 2015 , Page(s): 1 - 6 ; 9781467391757 (ISBN) Mostafazadeh, A ; Shirehjini, A. A. N ; Daraei, S ; Khojasteh, N ; Shirmohammadi, S ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2015
    Abstract
    The aim of this paper is the design and development of a novel user interface to interact with a meta system. Our focus is rather on interacting with Ambient Intelligence as a whole, which would for example enable users to influence the overall behaviors and attributes of dynamic device compositions. We call such interfaces Meta User Interfaces. The design details of a proposed user interface as well as a cognitive walkthrough evaluation are presented in this paper  

    Fabrication and characterization of biaxially electrospun collagen/alginate nanofibers, improved with Rhodotorula mucilaginosa sp. GUMS16 produced exopolysaccharides for wound healing applications

    , Article International Journal of Biological Macromolecules ; Volume 196 , 2022 , Pages 194-203 ; 01418130 (ISSN) Ashraf, S. S ; Parivar, K ; Hayati Roodbari, N ; Mashayekhan, S ; Amini, N ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    Fabrication of scaffolds with enhanced mechanical properties and desirable cellular compatibility is critical for numerous tissue engineering applications. This study was aimed at fabrication and characterization of a nanofiber skin substitute composed of collagen (Col)/sodium alginate (SA)/ polyethylene oxide (PEO)/Rhodotorula mucilaginosa sp. GUMS16 produced exopolysaccharides (EPS) were prepared using the biaxial electrospinning technique. This study used collagen extracted from the bovine tendon as a natural scaffold, sodium alginate as an absorber of excess wound fluids, and GUMS16 produced exopolysaccharides as an antioxidant. Collagen was characterized using FTIR and EDS analyses. The... 

    Axial potential mapping of optical tweezers for biopolymer stretching: The bead size matters

    , Article Optics Letters ; Volume 38, Issue 5 , 2013 , Pages 685-687 ; 01469592 (ISSN) Ahmadi, A ; Reihani, S. N. S ; Sharif University of Technology
    2013
    Abstract
    Optical tweezers (OT) are widely used for pico (and femto)-Newton range force measurements. The appropriate choice of the bead size is not well understood for biopolymer stretching applications of OT. We have shown, both by theory and experiment, that wrong choice of the bead size could cause errors as large as 295% in the measured force. We provide a simple map for correct choice of the bead size and the direction of pulling for such applications. There is a good agreement between our theoretical and experimental results  

    Comparison of furfural degradation by different photooxidation methods

    , Article Chemical Engineering Journal ; Volume 139, Issue 3 , 2008 , Pages 482-488 ; 13858947 (ISSN) Borghei, S. M ; Hosseini, S. N ; Sharif University of Technology
    2008
    Abstract
    In this paper, the degradation of C5H4O2 "Furfural" in aqueous solution by photooxidation technology using UV, UV/H2O2, UV/H2O2/O2, UV/H2O2/Fe2+, UV/O2/Fe2+, O3, UV/O3 process and also oxidation by sodium hypochlorite was investigated in a lab-scale batch photo-reactor. To evaluate the performance of different processes, the efficiency of furfural degradation was studied by measuring the total organic carbon (TOC) throughout the experimentation. Results show that compare to other reactions studied in this research, the UV/H2O2 is a simple and effective process for furfural degradation and presence of Fe2+ ions (UV/H2O2/Fe2+) enhanced removal of furfural in solution. The influence of... 

    Dynamic relay selection and resource allocation in cooperative networks based on OFDM

    , Article 17th European Wireless Conference 2011, EW 2011 ; 2011 , Pages 328-332 ; (Print ISBN): 978-3-8007-3343-9 Javidbakht, O ; Alizadeh, N. N ; Razavizadeh, S. M ; Sharif University of Technology
    2011
    Abstract
    In this paper, we are planning to introduce a new method for relay selection and resource allocation in OFDM-based cooperative networks. Up to now, there have been relatively few works clearly concentrating on the combination of relay selection and resource allocation in such networks. In our work, a network with a single transmitter, a single receiver and a group of relays is considered. Relays work on Amplify and Forward (AF) method and there is no direct link between the transmitter and the receiver. The optimization problem is to maximize the throughput of the receiver with constraints on the amounts of the power of the transmitter and relays, and subcarriers. We will introduce an... 

    H0 tension as a hint for a transition in gravitational theory

    , Article Physical Review D ; Volume 99, Issue 10 , 2019 ; 24700010 (ISSN) Khosravi, N ; Baghram, S ; Afshordi, N ; Altamirano, N ; Sharif University of Technology
    American Physical Society  2019
    Abstract
    We propose a cosmological model, üΛCDM, based on "über gravity," which is a canonical ensemble average of many theories of gravity. In this model, we have a sharp transition from (a purely) ΛCDM era to a phase in which the Ricci scalar is a constant. This transition occurs when the Ricci scalar reaches a critical scale or alternatively a transition redshift, z. We use the observations of baryonic acoustic oscillations and supernovae Ia, as well as the cosmic microwave background data to constrain üΛCDM. This yields H0=70.6-1.3+1.1 km/s/Mpc, ωm=0.2861±0.0092, and z=0.537-0.375+0.277, providing a marginally better fit with a Akaike information criterion of 0.8. Therefore, üΛCDM can ease the H0... 

    The ODYSSEY approach to early simulation-based equivalence checking at ESL level using automatically generated executable transaction-level model

    , Article Microprocessors and Microsystems ; Volume 32, Issue 7 , 2008 , Pages 364-374 ; 01419331 (ISSN) Goudarzi, M ; Hessabi, S ; MohammadZadeh, N ; Zainolabedini, N ; Sharif University of Technology
    2008
    Abstract
    Design technology is expected to rise to electronic system-level (ESL). This necessitates new techniques and tools for synthesizing ESL designs and for verifying them before and after ESL synthesis. A promising verification strategy for future very complex designs is to initially verify the design at the highest level of abstraction, and then check the equivalence of the lower level automatically generated models against that initial golden model. We present one such approach to simulation-based functional verification implemented in our ESL design methodology called ODYSSEY. Our ESL synthesis tool generates a transaction-level model (TLM) at TLM level 2 (i.e., design with partial timing)... 

    Synthesis of soluble N-functionalized polysaccharide derivatives using phenyl carbonate precursor and their application as catalysts

    , Article Starch/Staerke ; Volume 63, Issue 12 , 2011 , Pages 780-791 ; 00389056 (ISSN) Pourjavadi, A ; Seidi, F ; Afjeh, S. S ; Nikoseresht, N ; Salimi, H ; Nemati, N ; Sharif University of Technology
    2011
    Abstract
    Soluble N-functionalized basic and cationic polysaccharides have been synthesized using polysaccharide phenyl carbonate as a precursor. The products and intermediates were thoroughly characterized by conventional methods. The quaternization of amino intermediates in various conditions was studied. Moreover, the potential of basic polymers as green and selective catalysts in Knoevenagel reaction was investigated. In all cases, only one isomer was obtained  

    Reducing traffic congestion and increasing sustainability in special urban areas through one-way traffic reconfiguration

    , Article Transportation ; 2021 ; 00494488 (ISSN) Karimi, H ; Ghadirifaraz, B ; Shetab Boushehri, S. N ; Hosseininasab, S. M ; Rafiei, N ; Sharif University of Technology
    Springer  2021
    Abstract
    In the contemporary sustainable urban set up, one of the critical issues adversely affecting the quality of life in urban areas and inflicting immense costs on cities is traffic congestion. Traffic congestion is an outgrowth of increased traffic flow in certain locations of large cities. Recently, urban decision-makers and transportation planners resort to one-way traffic system as an effective traffic management strategy, which has a profound effect on reducing traffic congestion and improving traffic flow, leading to urban sustainability. In the present paper, the authors endeavored to develop a novel methodological framework based on optimization techniques in order to mitigate traffic... 

    Reducing traffic congestion and increasing sustainability in special urban areas through one-way traffic reconfiguration

    , Article Transportation ; Volume 49, Issue 1 , 2022 , Pages 37-60 ; 00494488 (ISSN) Karimi, H ; Ghadirifaraz, B ; Shetab Boushehri, S. N ; Hosseininasab, S. M ; Rafiei, N ; Sharif University of Technology
    Springer  2022
    Abstract
    In the contemporary sustainable urban set up, one of the critical issues adversely affecting the quality of life in urban areas and inflicting immense costs on cities is traffic congestion. Traffic congestion is an outgrowth of increased traffic flow in certain locations of large cities. Recently, urban decision-makers and transportation planners resort to one-way traffic system as an effective traffic management strategy, which has a profound effect on reducing traffic congestion and improving traffic flow, leading to urban sustainability. In the present paper, the authors endeavored to develop a novel methodological framework based on optimization techniques in order to mitigate traffic... 

    Michael-Addition-Initiated chemoselective three-component reaction for the synthesis of 2-(3-Oxo-1,3-diarylpropyl)malononitrile derivatives using cerium(IV) ammonium nitrate in phosphorus ionic liquid

    , Article Polycyclic Aromatic Compounds ; Volume 42, Issue 9 , 2022 , Pages 6328-6336 ; 10406638 (ISSN) Bahrami, G ; Batooie, N ; Mousavi, S. R ; Miraghaee, S. S ; Hosseinzadeh, N ; Mousavian, S ; Hoshyari, A ; Sajadimajd, S ; Mohammadi, B ; Hatami, R ; Sharif University of Technology
    Taylor and Francis Ltd  2022
    Abstract
    The aim of this research is the study of hexyltriphenylphosphonium bromide (HTPB) ionic liquid as a bifunctional promoter (solvent and catalyst) in the presence of cerium(IV) ammonium nitrate as a single electron oxidant for the Michael reaction at room temperature and solvent-free conditions. A novel, one-pot and environmentally benign the process to achieve the chemoselective of 2-(3-oxo-1,3-diarylpropyl)malononitrile derivatives instead of 2-(1,3-diarylallylidene)malononitriles using a three-component reaction involving acetophenone derivatives, various aromatic aldehydes and malononitrile was developed. This protocol is simple and provides biologically interesting products in good... 

    AGN ACTIVITY and IGM HEATING in the FOSSIL CLUSTER RX J1416.4+2315

    , Article Astronomical Journal ; Volume 150, Issue 6 , 2015 ; 00046256 (ISSN) Miraghaei, H ; Khosroshahi, H. G ; Sengupta, C ; Raychaudhury, S ; Jetha, N. N ; Abbassi, S ; Sharif University of Technology
    Institute of Physics Publishing  2015
    Abstract
    We study active galactic nucleus (AGN) activity in the fossil galaxy cluster RX J1416.4+2315. Radio observations were carried out using the Giant Metrewave Radio Telescope at two frequencies, 1420 and 610 MHz. A weak radio lobe that extends from the central nucleus is detected in the 610 MHz map. Assuming the radio lobe originated from the central AGN, we show that the energy injection into the intergalactic medium is only sufficient to heat up the central 50 kpc within the cluster core, while the cooling radius is larger (∼130 kpc). In the hardness ratio map, three low energy cavities have been identified. No radio emission is detected for these regions. We evaluated the power required to... 

    Effect of Si antioxidant on the rate of oxidation of carbon in MgO-C refractory

    , Article International Journal of Engineering, Transactions B: Applications ; Volume 24, Issue 4 , 2011 , Pages 357-366 ; 1728-144X (ISSN) Sadrnezhaad, S. K ; Bagheri, N ; Mahshid, S ; Sharif University of Technology
    Materials and Energy Research Center  2011
    Abstract
    Progressive conversion/shrinking core (PC-SC) models of constant-size cylinders were exploited to interpret the decarburization reactions of MgO-C-Si bricks heated up under blown air. Chemical adsorption/solid (or pore) diffusion mechanisms governed the reaction rate. With 5% silicon, chemical adsorption vanished at 1000 and 1100°C. The oxidation rate lowered then with temperature. This was due apparently to the blocking of the pore-end gorges by the voluminous compounds (like Forstrite). Arrhenius plots of the specific rates yielded the activation energies of the prevailing steps. Without Si antioxidant, three steps were appreciated having activation energies of 51.65 (for chemical... 

    Analytical and experimental frequency response analysis of microcantilevers subject to tip-sample interaction

    , Article Proceedings of the ASME International Design Engineering Technical Conferences and Computers and Information in Engineering Conference 2009, DETC2009, 30 August 2009 through 2 September 2009 ; Volume 6 , September , 2010 , Pages 575-581 ; 9780791849033 (ISBN) Delnavaz, A ; Mahmoodi, S. N ; Jalili, N ; Zohoor, H ; Sharif University of Technology
    2010
    Abstract
    Improvement of microcantilever-based sensors and actuators chiefly depends on how comprehensively they are modeled and precisely formulated. Atomic Force Microscopy (AFM) is the most widespread application of microcantilever beam as a sensor, which is usually influenced by the tip-sample interaction force. For this, vibration of AFM microcantilever probe is analyzed in this paper, along with analytical, numerical and experimental investigation of the influence of the sample interaction force on the microcantilever vibration. Nonlinear integro-partial equation of microcantilever vibration subject to the tip-sample interaction is then derived and numerically simulated. Moreover, multiple time... 

    Frequency response behavior of microcantilevers in tapping-mode Atomic Force Microscopy

    , Article Proceedings of the ASME Design Engineering Technical Conference, 15 August 2010 through 18 August 2010, Montreal, QC ; Volume 4 , 2010 , Pages 469-476 ; 9780791844120 (ISBN) Delnavaz, A ; Mahmoodi, S. N ; Jalili, N ; Zohoor, H ; Sharif University of Technology
    2010
    Abstract
    Distributed-parameters vibration model of microcantilevers in tapping-mode Atomic Force Microscopy (AFM) is developed and is shown to be highly nonlinear. The question of why these nonlinearities are important and how they influence the predicted frequency response behavior of the cantilevers is addressed by comparing the results of developed model with a simple lumpedparameters model that has been extensively studied in the literature so far. The interaction forces between the microcantilever tip and the sample is supposed to be the same in both models and consist of attractive and repulsive interaction force regimes. In addition, experimental measurements are provided for a typical... 

    Linear and non-linear vibration and frequency response analyses of microcantilevers subjected to tip-sample interaction

    , Article International Journal of Non-Linear Mechanics ; Volume 45, Issue 2 , 2010 , Pages 176-185 ; 00207462 (ISSN) Delnavaz, A ; Mahmoodi, S. N ; Jalili, N ; Zohoor, H ; Sharif University of Technology
    2010
    Abstract
    Despite their simple structure and design, microcantilevers are receiving increased attention due to their unique sensing and actuation features in many MEMS and NEMS. Along this line, a non-linear distributed-parameters modeling of a microcantilever beam under the influence of a nanoparticle sample is studied in this paper. A long-range Van der Waals force model is utilized to describe the microcantilever-particle interaction along with an inextensibility condition for the microcantilever in order to derive the equations of motion in terms of only one generalized coordinate. Both of these considerations impose strong nonlinearities on the resultant integro-partial equations of motion. In... 

    Linear and nonlinear approaches towards amplitude modulation atomic force microscopy

    , Article Current Applied Physics ; Volume 10, Issue 6 , 2010 , Pages 1416-1421 ; 15671739 (ISSN) Delnavaz, A ; Mahmoodi, S. N ; Jalili, N ; Zohoor, H ; Sharif University of Technology
    2010
    Abstract
    Frequency response behavior of microcantilever is analytically and experimentally investigated in amplitude modulation Atomic Force Microscopy (AFM). AFM microcantilever probe is modeled as a continuous beam, and tip-sample interaction force is considered to include both attractive and repulsive force regimes. The developed model is compared with the linear lumped-parameters model that has been extensively used in the literature so far. Experimental measurements are also provided for the frequency response of a typical microcantilever-sample system to demonstrate the advantages of the developed model over the linear formulation. The results indicate that the nonlinear continuous model is... 

    Analytical and experimental frequency response analysis of microcantilevers subject to tip-sample interaction

    , Article Proceedings of the ASME Design Engineering Technical Conference, 30 August 2009 through 2 September 2009 ; Volume 6 , 2009 , Pages 575-581 ; 9780791849033 (ISBN) Delnavaz, A ; Mahmoodi, S. N ; Jalili, N ; Zohoor, H ; Sharif University of Technology
    2009
    Abstract
    Improvement of microcantilever-based sensors and actuators chiefly depends on how comprehensively they are modeled and precisely formulated. Atomic Force Microscopy (AFM) is the most widespread application of microcantilever beam as a sensor, which is usually influenced by the tip-sample interaction force. For this, vibration of AFM microcantilever probe is analyzed in this paper, along with analytical, numerical and experimental investigation of the influence of the sample interaction force on the microcantilever vibration. Nonlinear integro-partial equation of microcantilever vibration subject to the tip-sample interaction is then derived and numerically simulated. Moreover, multiple time...