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Analysis and data-based reconstruction of complex nonlinear dynamical systems : using the methods of stochastic processes
, Book
Springer International Publishing
2019
Abstract
This book focuses on a central question in the field of complex systems: Given a fluctuating (in time or space), uni- or multi-variant sequentially measured set of experimental data (even noisy data), how should one analyse non-parametrically the data, assess underlying trends, uncover characteristics of the fluctuations (including diffusion and jump contributions), and construct a stochastic evolution equation?
Here, the term "non-parametrically" exemplifies that all the functions and parameters of the constructed stochastic evolution equation can be determined directly from the measured data.
The book provides an overview of methods that have been developed for the analysis of...
Here, the term "non-parametrically" exemplifies that all the functions and parameters of the constructed stochastic evolution equation can be determined directly from the measured data.
The book provides an overview of methods that have been developed for the analysis of...
Tipping Cascades in Complex Networks: Dynamics and Control
, M.Sc. Thesis Sharif University of Technology ; Rahimi Tabar, Mohammad Reza (Supervisor)
Abstract
Tipping points occur in diverse systems in various disciplines such as ecology, climate science, economy, sociology, and engineering. Critical thresholds in system parameters or state variables at which a tiny perturbation can lead to a qualitative change in the system exist in many subsystems in complex systems. These thresholds are called tipping points, and these subsystems are called tipping elements. Additionally, many systems with tipping points can be modeled as networks of coupled multistable subsystems. Domino-like tippings are called tipping cascades. Considering that these tipping cascades are primarily unprecedented, it is essential to study the dynamics and control of these...
The level crossing and inverse statistic analysis of German stock market index (DAX) and daily oil price time series
, Article Physica A: Statistical Mechanics and its Applications ; Volume 391, Issue 1-2 , 2012 , Pages 209-216 ; 03784371 (ISSN) ; Hölling, M ; Peinke, J ; Rahimi Tabar, M. Reza ; Sharif University of Technology
2012
Abstract
The level crossing and inverse statistics analysis of DAX and oil price time series are given. We determine the average frequency of positive-slope crossings, να+, where Tα=1να+ is the average waiting time for observing the level α again. We estimate the probability P(K,α), which provides us the probability of observing K times of the level α with positive slope, in time scale Tα. For analyzed time series, we found that maximum K is about ≈6. We show that by using the level crossing analysis one can estimate how the DAX and oil time series will develop. We carry out the same analysis for the increments of DAX and oil price log-returns (which is known as inverse statistics), and provide the...
Approaching complexity by stochastic methods: From biological systems to turbulence
, Article Physics Reports ; Volume 506, Issue 5 , 2011 , Pages 87-162 ; 03701573 (ISSN) ; Peinke, J ; Sahimi, M ; Reza Rahimi Tabar, M ; Sharif University of Technology
2011
Abstract
This review addresses a central question in the field of complex systems: given a fluctuating (in time or space), sequentially measured set of experimental data, how should one analyze the data, assess their underlying trends, and discover the characteristics of the fluctuations that generate the experimental traces? In recent years, significant progress has been made in addressing this question for a class of stochastic processes that can be modeled by Langevin equations, including additive as well as multiplicative fluctuations or noise. Important results have emerged from the analysis of temporal data for such diverse fields as neuroscience, cardiology, finance, economy, surface science,...
Singularity time scale of the kardar-parisi-zhang equation in 2+1 dimensions
, Article Journal of Statistical Physics ; Volume 112, Issue 3-4 , 2003 , Pages 437-456 ; 00224715 (ISSN) ; Masoudi, A. A ; Reza Rahimi Tabar, M ; Sharif University of Technology
2003
Abstract
A master equation for the Kardar-Parisi-Zhang (KPZ) equation in 2+1 dimensions is developed. In the fully nonlinear regime we determine the finite time scale of the singularity formation in terms of the characteristics of forcing. The exact probability density function of the one point height field is obtained correspondingly
Studying Synchronization Control in Complex Systems
, M.Sc. Thesis Sharif University of Technology ; Rahimi Tabar, Mohammad Reza (Supervisor)
Abstract
In this thesis, we review recent advances on controlling of complex systems. We provide in details, the concepts of synchronizability and synchronization controllability.Then we will investigate synchronization controllability under different pinning schemes, and propose a new pinning strategy to increase controllability and consequently decrease the number of required pinned nodes (known as driver nodes) to assure a stable synchronized state. We also study the network characteristics of resulted sequence of driver nodes. Finally, we will employ our proposed schemes to study the controllability of complex networks of chaotic Rossler oscillators
Imprints of gravitational millilensing on the light curve of gamma-ray bursts
, Article Astrophysical Journal ; Volume 922, Issue 1 , November , 2021 ; 0004637X (ISSN) ; Ibrahim, A ; Reza Rahimi Tabar, M ; Rahvar, S ; Sharif University of Technology
IOP Publishing Ltd
2021
Abstract
In this work, we search for signatures of gravitational millilensing in gamma-ray bursts (GRBs) in which the source-lens-observer geometry produces two images that manifest in the GRB light curve as superimposed peaks with identical temporal variability (or echoes), separated by the time delay between the two images. According to the sensitivity of our detection method, we consider millilensing events due to point-mass lenses in the range of 105 - 107 M o˙ at lens redshift about half that of the GRB, with a time delay on the order of 10 s. Current GRB observatories are capable of resolving and constraining this lensing scenario if the above conditions are met. We investigated the Fermi/GBM...
Vibrational lifetimes of hydrated phospholipids
, Article EPL ; Volume 102, Issue 2 , May , 2013 ; 02955075 (ISSN) ; Anvari, M ; Mashaghi, A ; Sahimi, M ; Reza Rahimi Tabar, M ; Sharif University of Technology
2013
Abstract
Large-scale ab initio molecular-dynamics simulations have been carried out to compute, at human-body temperature, the vibrational modes and lifetimes of pure and hydrated dipalmitoylphosphatidylcholine (DPPC) lipids. The projected atomic vibrations calculated from the spectral energy density are used to compute the vibrational modes and the lifetimes. All the normal modes of the pure and hydrated DPPC and their frequencies are identified. The computed lifetimes incorporate the full anharmonicity of the atomic interactions. The vibrational modes of the water molecules close to the head group of DPPC are active (possess large projected spectrum amplitudes) in the frequency range 0.5-55 THz,...
Structural Disorders of Graphene and Its Effects on Electronic Properties
, M.Sc. Thesis Sharif University of Technology ; Rahimi Tabar, Mohammad Reza (Supervisor)
Abstract
In this thesis we would like to investigate structural disorder of Graphene and its effect on electronic properties. Graphene is a one-layer crystal of Carbon atoms which was the first two dimensional crystal observed experimentally. Low energy current carriers on Graphene behave like mass-less Dirac fermions and this interesting electronic property attracts much attention on studying Graphene. Structural disorder of Graphene highly affects its electronic properties. We study thermal fluctuations of Graphene sheet, disorder super lattice, and static ripples, as structural disorders of Graphene. Disorders due to thermal fluctuations of graphene induce a disordered gauge field on the graphene...
Study of Surface Growth of Organic Thin Film
, M.Sc. Thesis Sharif University of Technology ; Rahimi Tabar, Mohammad Reza (Supervisor)
Abstract
In recent decades the Due to development of coating techniques and the diversity of high organic matter, Discussion of organic coating materials being raised. Moreover, because of many applications of organic thin film in electronic and optical systems for example OTFTs and OLEDs Organic thin film growth topic is very interesting for scientists. Among these, some scientists study the theory and another bunch of scientists pay to practical aspects of this topic. In this thesis I pay to the theoretical level of Organic thin film growth and I simulate the system includes a collection of molecules, Went on to study some statistical properties of the system will be discussed and the dynamic...
Phase and Group Velocity of Scalar Waves in One Dimensional Disorderd Media
, M.Sc. Thesis Sharif University of Technology ; Rahimi Tabar, Mohammad Reza (Supervisor)
Abstract
In this thesis we study the dispersion of one-dimensional scalar waves in a random media. We used the finite difference method to obtain the numerical solution of wave equation in this media. Then we were able to find wave signals for different disorder intensities and at different distances from the source. Using the Wavelet Transform, intresting features such as phase and group velocity can be studied. The Morlet function is used as the mother wavelet for decomposing the signals at different places. Cross-correlation functions of Wavlet transforms of the signals at different positions are used to obtain phase velocity and its dependence on frequency. We show how the phase velocity at the...
Inferring the Directionality of Coupling forTwo Time Series
, M.Sc. Thesis Sharif University of Technology ; Rahimi Tabar, Mohammad Reza (Supervisor)
Abstract
The synchronization phenomena are abundant is science, nature, engineering, and social life. Systems as diverse as clocks, singing crickets, cardiac pacemakers, firing neurons, and applauding audiences exhibit a tendency to operate in synchrony. These phenomena are universal and can be understood within a common framework based on modern nonlinear dynamics. First chapter of this thesis describes the basic ideas of the synchronization in an intuitive way. The main physical concepts are presented with experimental examples.
One of the main effects of synchronization is the ability to infer the directionality of coupling for two time series. Uncovering the directionality of coupling is a...
One of the main effects of synchronization is the ability to infer the directionality of coupling for two time series. Uncovering the directionality of coupling is a...
Resilience Pattern in Neural Network
, M.Sc. Thesis Sharif University of Technology ; Rahimi Tabar, Mohammad Reza (Supervisor)
Abstract
In this thesis the resilience of a neural network is examined under structural perturbation.The network consists of Spiking neurons with specific dynamics or they are binary neurons and the network is non-spiking. Neural network is a multi-dimensional and multi-stable system therefore we can map their dynamical equations to effective one-dimensional equation with one parameter which shows the environmental conditions.The resilience of the system is evaluated with respect to changes in weights and edges of the network and the the resilience pattern of the system is obtained.Finally, the recovery and control methods are briefly discussed
Data-driven Control of Complex Systems
,
M.Sc. Thesis
Sharif University of Technology
;
Rahimi Tabar, Mohammad Reza
(Supervisor)
Abstract
In this thesis, we first briefly review the basic concepts of stochastic processes. After reviewing and studying the dynamic equation that can explain a stochastic process, we show how one can find on a data-driven basis, the first-, second- and higher-order interactions between different subunits of a complex system by disentangling the dynamics of multivariate time series into stochastic and deterministic parts. Our data-driven approach is to detect different degrees of interactions obtained using conditional moments of Kramers-Moyal coefficients from unconditioned correlation functions and statistical moments of multivariate N-dimensional multivariate time series. Finally, we study the...
Multidimensional Jump-diffusion Processes
, M.Sc. Thesis Sharif University of Technology ; Rahimi Tabar, Mohammad Reza (Supervisor)
Abstract
In this thesis, we first provide a brief overview of the basic concepts of stochastic processes and the mathematical tools required to study these processes. Then, we demonstrate that by using a data-driven approach, one can obtain the corresponding coefficients for deterministic, diffusion, and jump components of the stochastic process. In this method, the conditional moments of Kramers–Moyal coefficients are calculated using statistical moments of N-dimensional time series. These coefficients enable us to determine different orders of interactions, diffusion and jump properties, and %relationships coupling coefficients between time series. Furthermore, to evaluate the accuracy of the...
Numerical solution of stochastic differential equations: diffusion and jump-diffusion processes
, Article Understanding Complex Systems ; 2019 , Pages 129-142 ; 18600832 (ISSN) ; Sharif University of Technology
Springer Verlag
2019
Abstract
Stochastic differential equations (SDE) play an important role in a range of application areas, including biology, physics, chemistry, epidemiology, mechanics, microelectronics, economics, and finance [1]. However, most SDEs, especially nonlinear SDEs, do not have analytical solutions, so that one must resort to numerical approximation schemes in order to simulate trajectories of the solutions to the given equation. The simplest effective computational method for approximation of ordinary differential equations is the Euler’s method. The Euler–Maruyama method is the analogue of the Euler’s method for ordinary differential equations for numerical simulation of the SDEs [2]. Another numerical...
Stochastic processes with jumps and non-vanishing higher-order kramers–moyal coefficients
, Article Understanding Complex Systems ; 2019 , Pages 99-110 ; 18600832 (ISSN) ; Sharif University of Technology
Springer Verlag
2019
Abstract
In this chapter we study stochastic processes in the presence of jump discontinuity, and discuss the meaning of non-vanishing higher-order Kramers–Moyal coefficients. We describe in details the stochastic properties of Poisson jump processes. We derive the statistical moments of the Poisson process and the Kramers–Moyal coefficients for pure Poisson jump events. Growing evidence shows that continuous stochastic modeling (white noise-driven Langevin equation) of time series of complex systems should account for the presence of discontinuous jump components [1–6]. Such time series have some distinct important characteristics, such as heavy tails and occasionally sudden large jumps....
Reconstruction of stochastic dynamical equations: exemplary diffusion, jump-diffusion processes and lévy noise-driven langevin dynamics
, Article Understanding Complex Systems ; 2019 , Pages 227-241 ; 18600832 (ISSN) ; Sharif University of Technology
Springer Verlag
2019
Abstract
In this chapter we reconstruct stochastic dynamical equations with known drift and diffusion coefficients, as well as known properties of jumps, jump amplitude and jump rate from synthetic time series, sampled with time interval τ. The examples have Langevin (white noise- and Lévy noise-driven) and jump-diffusion dynamical equations. We also study the estimation of the Kramers–Moyal coefficients for “phase” dynamics that enable us to investigate the phenomenon of synchronisation in systems with interaction. © 2019, Springer Nature Switzerland AG
Influence of finite time step in estimating of the kramers–moyal coefficients
, Article Understanding Complex Systems ; 2019 , Pages 191-205 ; 18600832 (ISSN) ; Sharif University of Technology
Springer Verlag
2019
Abstract
Data sampled at discrete times appear as successions of discontinuous jump events, even if the underlying trajectory is continuous. In this chapter we study finite sampling τ expansion of the Kramers-Moyal conditional moments for the Langevin and jump-diffusion dynamics. Using the expansion for the Langevin dynamics, we introduce a criterion to validate the method numerically, namely, the Pawula theorem, to judge whether the fourth-order KM moment tends to zero. The criterion is a relation between the fourth- and second-order KM conditional moments for small time lag τ [1]. © 2019, Springer Nature Switzerland AG
Applications and Outlook
, Article Understanding Complex Systems ; 2019 , Pages 243-260 ; 18600832 (ISSN) ; Sharif University of Technology
Springer Verlag
2019
Abstract
The method outlined in the Chaps. 15 – 21 has been used for revealing nonlinear deterministic and stochastic behaviors in a variety of problems, ranging from physics, to neuroscience, biology and medicine. In most cases, alternative procedures with strong emphasis on deterministic features have been only partly successful, due to their inappropriate treatment of the dynamical fluctuations [1]. In this chapter, we provide a list of the investigated phenomena using the introduced reconstruction method. In the “outlook” possible research directions for future are discussed. © 2019, Springer Nature Switzerland AG