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    Site-specific protein conjugation onto fluorescent single-walled carbon nanotubes

    , Article Chemistry of Materials ; Volume 32, Issue 20 , 2020 , Pages 8798-8807 Zubkovs, V ; Wu, S. J ; Rahnamaee, S. Y ; Schuergers, N ; Boghossian, A. A ; Sharif University of Technology
    American Chemical Society  2020
    Abstract
    Semiconducting single-walled carbon nanotubes (SWCNTs) are among the few photostable optical emitters that are ideal for sensing, imaging, drug delivery, and monitoring of protein activity. These applications often require strategies for immobilizing proteins onto the nanotube while preserving the optical properties of the SWCNTs. Site-specific and oriented immobilization strategies, in particular, offer advantages for improving sensor and optical signaling responses. In this study, we demonstrate site-specific protein immobilization of a model of enhanced yellow fluorescent protein with a single engineered cysteine residue, using either single-stranded DNA or a pyrene-containing linker to... 

    MiR-9-5p and miR-106a-5p dysregulated in CD4+ T-cells of multiple sclerosis patients and targeted essential factors of T helper17/regulatory T-cells differentiation

    , Article Iranian Journal of Basic Medical Sciences ; Volume 21, Issue 3 , March , 2018 , Pages 277-283 ; 20083866 (ISSN) Majd, M ; Hosseini, A ; Ghaedi, K ; Kiani Esfahani, A ; Tanhaei, S ; Shiralian Esfahani, H ; Rahnamaee, S. Y ; Mowla, S. J ; Nasr Esfahani, M. H ; Sharif University of Technology
    Mashhad University of Medical Sciences  2018
    Abstract
    Objective(s): Multiple sclerosis (MS) is considered as a chronic type of an inflammatory disease characterized by loss of myelin of CNS. Recent evidence indicates that Interleukin 17 (IL-17)-producing T helper cells (Th17 cells) population are increased and regulatory T cells (Treg cells) are decreased in MS. Despite extensive research in understanding the mechanism of Th17 and Treg differentiation, the role of microRNAs in MS is not completely understood. Thereby, as a step closer, we analyzed the expression profile of miR-9-5p and miR-106a-5p, and protein level of retinoic acid receptor (RAR)-related orphan receptor C (RORC; Th17 master transcription factor) as direct target of miR-106a-5p... 

    Synergistic Wound Healing by Novel Ag@ZIF-8 Nanostructures

    , Article International Journal of Pharmaceutics ; Volume 629 , 2022 ; 03785173 (ISSN) Barjasteh, M ; Mohsen Dehnavi, S ; Ahmadi Seyedkhani, S ; Yahya Rahnamaee, S ; Golizadeh, M ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    In this paper, novel zeolitic imidazolate framework-8 (ZIF-8) functionalized with Ag (Ag@ZIF-8) nanoparticles were synthesized through a green, facile and environmental-friendly process for wound dressing applications. X-ray diffraction revealed that the ZIF-8 and Ag@ZIF-8 were successfully synthesized by green solvents at ambient temperature. Field-emission scanning electron microscopy indicated a homogeneous porous blend of ∼30 nm chitosan/bacterial cellulose (CS/BC) nanofibers embedded with ∼80–110 nm nanoparticles of the ZIF-8 and Ag@ZIF-8. Transmission electron microscopy revealed the Ag@ZIF-8 nanostructures consist of ZIF-8 cores that are covered by 5–20 nm Ag nanoparticles. MTT assay... 

    Bioinspired multifunctional TiO2 hierarchical micro/nanostructures with tunable improved bone cell growth and inhibited bacteria adhesion

    , Article Ceramics International ; Volume 46, Issue 7 , 2020 , Pages 9669-9679 Rahnamaee, S. Y ; Bagheri, R ; Vossoughi, M ; Ahmadi Seyedkhani, S ; Samadikuchaksaraei, A ; Sharif University of Technology
    Elsevier Ltd  2020
    Abstract
    Two main origins of failure for hard tissue replacements are structural loosening and prosthetic implant infections (PIIs). Bioinspired multifunctional TiO2 hierarchical micro/nanostructures of conical-shaped TiO2 (CTO), regular TiO2 nanotubes (RTO) and irregular TiO2 nanotubes (ITO) with tunable improved cell growth and inhibited bacteria adhesion were synthesized. CTO and ITO samples indicated superhydrophilicity with contact angles of less than 5°. The MTT assay demonstrated excellent biological performance for RTO and CTO sample with 98.1% and 103.1% of cell viability, respectively. The bridging force for osteoblast cell attachment onto the synthesized porous coatings was presented as a... 

    Bioinspired TiO2/chitosan/HA coatings on Ti surfaces: Biomedical improvement by intermediate hierarchical films

    , Article Biomedical Materials (Bristol) ; Volume 17, Issue 3 , 2022 ; 17486041 (ISSN) Rahnamaee, S. Y ; Ahmadi Seyedkhani, S ; Eslami Saed, A ; Sadrnezhaad, S. K ; Seza, A ; Sharif University of Technology
    Institute of Physics  2022
    Abstract
    The most common reasons for hard-tissue implant failure are structural loosening and prosthetic infections. Hence, in this study, to overcome the first problem, different bioinspired coatings, including dual acid-etched, anodic TiO2 nanotubes array, anodic hierarchical titanium oxide (HO), micro- and nanostructured hydroxyapatite (HA) layers, and HA/chitosan (HA/CS) nanocomposite, were applied to the titanium alloy surfaces. X-ray diffraction and FTIR analysis demonstrated that the in situ HA/CS nanocomposite formed successfully. The MTT assay showed that all samples had excellent cell viability, with cell proliferation rates ranging from 120% to 150% after 10 days. The HO coating... 

    Fabrication of Dental Implant from Ti-6Al-4V With Nanostructured Hydroxyapatite Coating

    , M.Sc. Thesis Sharif University of Technology Rahnamaee, Yahya (Author) ; Sadrnezhad, Khatiboleslam (Supervisor)
    Abstract
    The use of dental implants has grown considerably in recent years in Iran but this piece is the industrial imported parts that are not yet produced in Iran. So the main purpose of this research was to fabricate a dental implant from Ti-6Al-4V alloy by CNC machining techniques. On the other hand, the poor bonding strength of bioactive coatings and low cell growth on the surface of uncoated implants are the common problems in the use of dental implants. So another aim of this study was to investigate the effect of Nanoscale surface topography and nanostructured coatings on the surface modification of titanium implant in order to improve Osseointegration and the bonding strength of bioactive... 

    Nanofibrillated chitosan coated highly ordered titania nanotubes array/graphene nanocomposite with improved biological characters

    , Article Carbohydrate Polymers ; Volume 254 , 2021 ; 01448617 (ISSN) Rahnamaee, S. Y ; Bagheri, R ; Heidarpour, H ; Vossoughi, M ; Golizadeh, M ; Samadikuchaksaraei, A ; Sharif University of Technology
    Elsevier Ltd  2021
    Abstract
    Designing multifunctional surfaces is key to develop advanced materials for orthopedic applications. In this study, we design a double-layer coating, assembled onto the completely regular titania nanotubes (cRTNT) array. Benefiting from the biological and topological characteristics of chitosan nanofibers (CH) and reduced graphene oxide (RGO) through a unique assembly, the designed material features promoted osteoblast cell viability, prolonged antibiotic release profile, as well as inhibited bacterial biofilm formation. The synergistic effect of RGO and CH on the biological performance of the surface is investigatSed. The unique morphology of the nanofibers leads to the partial coverage of... 

    A new approach for simultaneously improved osseointegration and antibacterial activity by electrochemical deposition of graphene nanolayers over titania nanotubes

    , Article Applied Surface Science ; Volume 580 , 2022 ; 01694332 (ISSN) Yahya Rahnamaee, S ; Bagheri, R ; Vossoughi, M ; khafaji, M ; Asadian, E ; Ahmadi Seyedkhani, S ; Samadikuchaksaraei, A ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    Simultaneous enhancement of osseointegration and bacterial infection prohibition through surface modifications is a challenging but promising approach to achieve durable implantation. To that end, we present a multifunctional surface coating composed of graphene nanolayers and hierarchical well-aligned TiO2 nanotubes with a nanoporous top layer (cRTNT). FESEM studies reveal tunable increasing island morphologies of graphene nanolayers (G) on cRTNT by a cyclic voltammetry process. XPS analysis shows that the enhanced interface chemistry is due to TiO2-carbon bonding. The roughness of the sample containing a medium amount of graphene, cRTNT-75%GO, was calculated ∼289 nm, which was 543% higher... 

    Dynamic reconfiguration optimization of intelligent manufacturing system with human-robot collaboration based on digital twin

    , Article Journal of Manufacturing Systems ; Volume 65 , 2022 , Pages 330-338 ; 02786125 (ISSN) Zhu, Q ; Huang, S ; Wang, G ; Moghaddam, S. K ; Lu, Y ; Yan, Y ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    In Industry 4.0, the emergence of new information technology and advanced manufacturing technology (e.g., digital twin, and robot) promotes the flexibility and smartness of manufacturing systems to deal with production task fluctuation. Digital twin-driven manufacturing system with human-robot collaboration is a typical paradigm of intelligent manufacturing. When production task changes, manufacturing system reconfiguration with dynamic opeartion task allocation between operator (human) and robot is a key manner to maintain the production efficiency of intelligent manufacturing system with human-robot collaboration. However, the differences between operator and robot are neglected during... 

    Near-optimal trajectories to manage landing sequence in the vicinity of controlled aerodromes

    , Article Journal of Aircraft ; Volume 47, Issue 1 , 2010 , Pages 129-140 ; 00218669 (ISSN) Malaek, S. M ; Nabavi, S. Y ; Sharif University of Technology
    2010
    Abstract
    A comprehensive approach is proposed to manage landing sequences and their associated trajectories for an arbitrary number of aircraft in the vicinity of a controlled aerodrome. The current approach, similar to that of "first come, first served," could consider different types of priorities as well as emergencies. The approach is especially useful to combine unstructured free-flight trajectories with structured ones during the approach phase of the flight A comprehensive cost function considers the relative size of all aircraft together with their relative speeds and flight directions. This helps optimize the amount of fuel consumption while respecting separation minima. Resulting... 

    A thermodynamically consistent electro-chemo-mechanical theory for modeling axonal swelling

    , Article Journal of the Mechanics and Physics of Solids ; Volume 145 , 2020 Dehghany, M ; Naghdabadi, R ; Sohrabpour, S ; Li, Y ; Hu, Y ; Sharif University of Technology
    Elsevier Ltd  2020
    Abstract
    In the present study, for the first time, a thermodynamically consistent large deformation theory is developed to model the multi physics problem of axonal swelling which is the hallmark of most of the brain diseases. To this end, the relevant axonal compartments are first explained and the corresponding model parts are introduced. Next, the problem is formulated as an open thermodynamic system and the corresponding constitutive and evolution equations are extracted utilizing the balance laws. Here, a multiplicative decomposition of the deformation gradient is used to capture the active behavior of the axonal actin cortex. Specific free energy functions are given for the model parts to... 

    Design, fabrication and characterization of oxidized alginate-gelatin hydrogels for muscle tissue engineering applications

    , Article Journal of Biomaterials Applications ; Volume 31, Issue 1 , 2016 , Pages 152-161 ; 08853282 (ISSN) Baniasadi, H ; Mashayekhan, S ; Fadaoddini, S ; Haghirsharifzamini, Y ; Sharif University of Technology
    SAGE Publications Ltd  2016
    Abstract
    In this study, we reported the preparation of self cross-linked oxidized alginate-gelatin hydrogels for muscle tissue engineering. The effect of oxidation degree (OD) and oxidized alginate/gelatin (OA/GEL) weight ratio were examined and the results showed that in the constant OA/GEL weight ratio, both cross-linking density and Young's modulus enhanced by increasing OD due to increment of aldehyde groups. Furthermore, the degradation rate was increased with increasing OD probably due to decrement in alginate molecular weight during oxidation reaction facilitated degradation of alginate chains. MTT cytotoxicity assays performed on Wharton's Jelly-derived umbilical cord mesenchymal stem cells... 

    Aerodynamic shape optimization of unguided projectiles using Ant Colony Optimization and Genetic Algorithm

    , Article 25th Congress of the International Council of the Aeronautical Sciences 2006, Hamburg, 3 September 2006 through 8 September 2006 ; Volume 2 , 2006 , Pages 698-706 ; 9781604232271 (ISBN) Nobahari, H ; Nabavi, S. Y ; Pourtakdoust, S. H ; Sharif University of Technology
    2006
    Abstract
    The problem of aerodynamic shape optimization of unguided projectiles has been investigated. Two stochastic optimization methods have been applied to solve the problem. These include a Genetic Algorithm (GA) and the recently developed Continuous Ant Colony System (CACS), which is based on the well-known Ant Colony Optimization meta-heuristic. The objective function is defined as the summation of normal force coefficients over a set of given flight conditions. An engineering code (EC) is used to calculate the normal force coefficients over the flight conditions. The obtained results of CACS+EC are compared with those of GA+EC, as well as the results of a previous work (GA +AeroDesign). The... 

    An integrated model of parallel processing and PSO algorithm for solving optimum highway alignment problem

    , Article Proceedings - 27th European Conference on Modelling and Simulation, ECMS 2013 ; May , 2013 , Pages 551-557 Kazemi, S. F ; Shafahi, Y ; Sharif University of Technology
    European Council for Modelling and Simulation  2013
    Abstract
    Optimum highway alignment is among the most substantial, but large and complicated topics in transportation area. Infinite number of feasible solutions, numerous local optima and the constrained feature of the problem, associated with complex and mainly non-linear constraints, has put an extra effort into the problem solving process. This paper focuses on solving highway alignment optimization problem using an integrated model of parallel processing and particle swarm optimization algorithm. To achieve this goal, algorithm parallelization is done in synchronous and asynchronous manner. For assessing parallel performance, corresponding indexes are evaluated. SRTM3 databank is used for solving... 

    Modeling pedestrian's decision at street crossing

    , Article Traffic and Transportation Studies - Proceedings of the Fourth International Conference on Traffic and Transportation Studies, Dalian, 2 August 2004 through 4 August 2004 ; Volume 4 , 2004 , Pages 127-137 ; 7030137809 (ISBN) Nassiri, H ; Amooghin, Y. S ; Sharif University of Technology
    2004
    Abstract
    Safe and efficient pedestrian movement is an important issue of concern in traffic engineering. Evaluation and identification of effective parameters in pedestrians' decision-making process when crossing a street can be beneficial in improving their safety. In this report, two streets in Tehran, Iran were selected to study the pedestrians' crossing. The data from the video films at these locations were used to fit the logit and nested logit models. The results indicate that factors such as arrival time of first nearside vehicle to crosswalk, headway between first and second vehicle approaching the crosswalk, vehicles platoon size and their approaching speed in each lane, pedestrians' age,... 

    hysical and Chemical Surface Modification of Titanium by Nanostructured Materials, and Biological Characterization for Use in Bone Tissue Implants

    , Ph.D. Dissertation Sharif University of Technology Rahnamaee, Yahya (Author) ; Bagheri, Reza (Supervisor) ; Vossoughi, Manochehr (Supervisor) ; Samadi Kuchaksaraei, Ali (Supervisor)
    Abstract
    According to human needs and in line with the development of advanced technologies, different biomedical Engineering fields like hard tissue implants are growing rapidly. Despite significant biotechnology Developments in recent years, some problems to the recognition of implants related osseointegration phenomena persist. The deficient osseointegration and implant-associated infections are key issues for the long-term clinical success of titanium and titanium alloy implants, while development of multifunctional surfaces that can simultaneously overcome these problems remains highly challenging. Therefore, the ultimate goal of this paper was to improve bone cell attachment and simultaneously... 

    Trichloroethylene degradation by PVA-coated calcium peroxide nanoparticles in Fe(II)-based catalytic systems: enhanced performance by citric acid and nanoscale iron sulfide

    , Article Environmental Science and Pollution Research ; Volume 28, Issue 3 , 2021 , Pages 3121-3135 ; 09441344 (ISSN) Ali, M ; Shan, A ; Sun, Y ; Gu, X ; Lyu, S ; Zhou, Y ; Sharif University of Technology
    Springer Science and Business Media Deutschland GmbH  2021
    Abstract
    In this study, the enhanced trichloroethylene (TCE) degradation performance was investigated by polyvinyl alcohol coated calcium peroxide nanoparticles (PVA@nCP) as an oxidant in Fe(II)-based catalytic systems. The nanoscale iron sulfide (nFeS), having an average particle size of 115.4 nm, was synthesized in the laboratory and characterized by SEM, TEM, HR-TEM along with EDS elemental mapping, XRD, FTIR, ICP-OES, and XPS techniques. In only ferrous iron catalyzed system (PVA@nCP/Fe(II)), TCE degradation was recorded at 58.9% in 6 h. In comparison, this value was increased to 97.5% or 99.7% with the addition of citric acid (CA) or nFeS in PVA@nCP/Fe(II) system, respectively. A comparative... 

    Trichloroethylene degradation by PVA-coated calcium peroxide nanoparticles in Fe(II)-based catalytic systems: enhanced performance by citric acid and nanoscale iron sulfide

    , Article Environmental Science and Pollution Research ; Volume 28, Issue 3 , 2021 , Pages 3121-3135 ; 09441344 (ISSN) Ali, M ; Shan, A ; Sun, Y ; Gu, X ; Lyu, S ; Zhou, Y ; Sharif University of Technology
    Springer Science and Business Media Deutschland GmbH  2021
    Abstract
    In this study, the enhanced trichloroethylene (TCE) degradation performance was investigated by polyvinyl alcohol coated calcium peroxide nanoparticles (PVA@nCP) as an oxidant in Fe(II)-based catalytic systems. The nanoscale iron sulfide (nFeS), having an average particle size of 115.4 nm, was synthesized in the laboratory and characterized by SEM, TEM, HR-TEM along with EDS elemental mapping, XRD, FTIR, ICP-OES, and XPS techniques. In only ferrous iron catalyzed system (PVA@nCP/Fe(II)), TCE degradation was recorded at 58.9% in 6 h. In comparison, this value was increased to 97.5% or 99.7% with the addition of citric acid (CA) or nFeS in PVA@nCP/Fe(II) system, respectively. A comparative... 

    Excitation spectrum of correlated Dirac fermions

    , Article Journal of Physics: Conference Series, 14 January 2015 through 15 January 2015 ; Volume 603, Issue 1 , January , 2015 ; 17426588 (ISSN) Jalali, Z ; Jafari, S. A ; Suzumura Y ; Matsuura H ; Fuseya Y ; Ogata M ; Sharif University of Technology
    Institute of Physics Publishing  2015
    Abstract
    Motivated by the puzzling optical conductivity measurements in graphene, we speculate on the possible role of strong electronic correlations on the two-dimensional Dirac fermions. In this work we employ the slave-particle method to study the excitations of the Hubbard model on honeycomb lattice, away from half-filling. Since the ratio U/t ≈ 3.3 in graphene is not infinite, double occupancy is not entirely prohibited and hence a finite density of doublonscan be generated. We therefore extend the Ioff-Larkin composition rule to include a finite density of doublons. We then investigate the role played by each of these auxiliary particles in the optical absorption of strongly correlated Dirac... 

    Analysis of Phase-Shifted Full-Bridge Based dc-dc Converter considering transformer parasitic elements in discontinuous current mode

    , Article PEDSTC 2014 - 5th Annual International Power Electronics, Drive Systems and Technologies Conference ; 2014 , p. 366-372 Aghaei, M ; Karimi, Y ; Kaboli, S ; Sharif University of Technology
    2014
    Abstract
    In high-voltage applications, due to the use of high-ratio step-up transformers, the value of parasitic capacitance of these transformers is large compared to the low-voltage transformers. Moreover In these applications it is prefered to use single-capacitor filters instead of filters with inductors. In this paper a simple electrical model for two-winding high frequency transformer considering all of the parasitic elements is presented. This model is used in a full-bridge based dc-dc converter with capacitive output filter controlled by phase-shifted method. The operation of this converter in DCM is analysed and its analytical relations in different time intervals is derived and confirmed by...