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    An electrochemical sensing platform based on nitrogen-doped hollow carbon spheres for sensitive and selective isoprenaline detection

    , Article Journal of Electroanalytical Chemistry ; Volume 847 , 2019 ; 15726657 (ISSN) Shahrokhian, S ; Panahi, S ; Salimian, R ; Sharif University of Technology
    Elsevier B.V  2019
    Abstract
    In this work, uniform and monodisperse hollow carbon spheres (HCSs) are synthesized through two different processes using polydopamine (PDA), as a carbon precursor, and silica core as a template, under the modified Stöber condition. The surface morphology of the synthesized structures is characterized by means of scanning electron microscopy (SEM), energy dispersive X-ray spectroscopy (EDX) and Fourier-transform infrared spectroscopy (FT-IR). In the next step, the electrochemical behavior of isoprenaline (ISPN) is investigated by using glassy carbon electrode modified with a thin film of the synthesized hollow carbon spheres. The electrochemical characterization of the modified electrodes is... 

    Investigation of the electrochemical behavior of tizanidine on the surface of glassy carbon electrode modified with multi-walled carbon nanotube/titan yellow–doped polypyrrole

    , Article Journal of Electroanalytical Chemistry ; Volume 823 , 2018 , Pages 146-154 ; 15726657 (ISSN) Shahrokhian, S ; Shamloofard, M ; Salimian, R ; Sharif University of Technology
    2018
    Abstract
    The present paper describes a voltammetric sensor based on glassy carbon electrode (GCE) modified with a thin film of multi-walled carbon nanotubes (MWCNTs) coated with an electro-polymerized layer of titan yellow-doped over–oxidized polypyrrole (OPPY) for the determination of tizanidine (TIZ). A significant enhancement was observed in the anodic peak current of TIZ on the surface of OPPY/CNT/GCE, relative to the bare, CNT- and OPPY-coated GCEs. The microscopic structure and surface morphology of the composite film was thoroughly characterized by means of atomic force microscopy (AFM), scanning electron microscopy (SEM) and cyclic voltammetry (CV) techniques. The effect of various... 

    Surface modification of glassy carbon electrode with the functionalized carbon nanotube for ultrasensitive electrochemical detection of risperidone

    , Article Journal of the Iranian Chemical Society ; Volume 15, Issue 7 , July , 2018 , Pages 1485-1494 ; 1735207X (ISSN) Shahrokhian, S ; Hafezi Kahnamoui, M ; Salimian, R ; Sharif University of Technology
    Springer Verlag  2018
    Abstract
    Risperidone (RIS), one of the typical antipsychotics drugs, originally approved to be used for the mental illness treatment, especially schizophrenia, bipolar disorder, autism and major depression. In the present study, different carbon nanostructures including functionalized multi-walled carbon nanotubes (F-MWCNTs), carbon nanoparticles, nanodiamond-graphite and reduced graphene oxide were employed for modification of the surface of glassy carbon electrode (GCE) for ultrasensitive detection of RIS. The most significant increase in the anodic peak current of RIS was observed on F-MWCNTs-modified electrode (compared to the other modified electrodes and bare GCE). The influence of different... 

    Application of glassy carbon electrode modified with a carbon nanoparticle/melamine thin film for voltammetric determination of raloxifene

    , Article Journal of Electroanalytical Chemistry ; Volume 780 , 2016 , Pages 126-133 ; 15726657 (ISSN) Shahrokhian, S ; Ghalkhani, M ; Balotf, H ; Salimian, R ; Sharif University of Technology
    Elsevier B.V  2016
    Abstract
    As a selective estrogen receptor modulator, raloxifene (RXF) prevent of osteoporosis in postmenopausal women by estrogenic actions on bone and decreases the risk of invasive breast cancer by anti-estrogenic actions on the breast and uterus tissue. However, RXF may increase the risk of blood clots, including deep vein thrombosis and pulmonary embolism. For the first time glassy carbon electrode modified with a thin film of melamine/carbon nanoparticles (CNPs/Mela) was constructed and used for the sensitive voltammetric determination of RXF. In comparison with unmodified electrode, the presence of the CNPs/Mela film resulted in a remarkable increase in the peak currents and sharpness of the... 

    Application of Pd-Au Nanoparticles on Carbon Nanotubes Modified Electrode for Electrochemical Determination of Ceftazidime

    , M.Sc. Thesis Sharif University of Technology Salimian, Razieh (Author) ; Shahrokhian, Saeed (Supervisor)
    Abstract
    This present work is an introduction of a new electrochemical sensor toward the determination of biomolecule. A simple electrodeposition method was employed to construct a thin film modifier of palladium–gold nanoparticles (Pd–AuNPs) decorated multi-walled carbon nanotube (MWCNT) on the surface of glassy carbon electrode (GCE). Morphological characterization of the modified electrode was performed by the scanning electron microscopy (SEM), energy dispersive spectroscopy (EDS) and cyclic voltammetry (CV) techniques. This nanostructured film modified electrode effectively exhibited enhanced properties for the detection of ceftazidime (CFZ). The effects of various experimental variables such... 

    Modeling User Behavior in Applications and Maximising User Lifecycle

    , M.Sc. Thesis Sharif University of Technology Salimian, Hamed (Author) ; Habibi, Jafar (Supervisor)
    Abstract
    Smartphones are ubiquitous nowadays. This fact would give the opportunity to the developers to earn lots of money and attention. One of the main factors in a successful business plan is user lifecycle, meaning that users use the app more and more in a specific period. For app developers, notifications are an effective way to interact with the users in different ways depending on the nature of the notification. However, hen a notification is sent out to a user, it is delivered directly without considering the users situationor psychological state. The notification could be perceived as a distraction or interruption, potentially causing inattentionand frustration for the recipient, even if the... 

    Enhanced electrochemical activity of a hollow carbon sphere/polyaniline-based electrochemical biosensor for HBV DNA marker detection

    , Article ACS Biomaterials Science and Engineering ; Volume 5, Issue 5 , 2019 , Pages 2587-2594 ; 23739878 (ISSN) Salimian, R ; Shahrokhian, S ; Panahi, S ; Sharif University of Technology
    American Chemical Society  2019
    Abstract
    Herein, we present a novel, simple, and ultrasensitive electrochemical DNA (E-DNA) sensor based on hollow carbon spheres (HCS) decorated with polyaniline (PANI). A thiolated 21-mer oligonucleotide, characteristic of HBV DNA, is immobilized via electrodeposited gold nanoparticles on HCS-PANI. Cyclic voltammetry (CV), differential pulse voltammetry (DPV), and electrochemical impedance spectroscopy (EIS) are used to characterize the electrochemical properties of the prepared nanocomposite. Scanning electron microscopy is employed to investigate the morphological texture of the fabricated modifier. An enhanced intrinsic signal of PANI is probed to evaluate the biosensing ability of the prepared... 

    Specific picomolar detection of a breast cancer biomarker her-2/neu protein in serum: electrocatalytically amplified electroanalysis by the aptamer/peg-modified electrode

    , Article ChemElectroChem ; Volume 4, Issue 4 , 2017 , Pages 872-879 ; 21960216 (ISSN) Salimian, R ; Kékedy Nagy, L ; Ferapontova, E. E ; Sharif University of Technology
    Wiley-VCH Verlag  2017
    Abstract
    Specific and sensitive electroanalysis of blood-circulating protein cancer biomarkers is often complicated by interference from serum proteins nonspecifically adsorbing at the biosensing interface and masking specific reactions of interest. Here, we have developed an electrocatalytically amplified assay for specific and sensitive analysis of human epidermal growth factor receptor-2 (HER-2/neu, a protein cancer biomarker over-expressed in breast cancers) that allows us to avoid both the interference from bovine serum albumin (BSA) and electrocatalytic amplification of the signal stemming from the specific aptamer−HER-2/neu binding. A HER-2/neu-specific thiolated aptamer sequence was... 

    Design and Development of Electrochemical DNA Nanobiosensors for Identification and Determination of Important Biomarkers

    , Ph.D. Dissertation Sharif University of Technology Salimian, Razieh (Author) ; Shahrokhian, Saeed (Supervisor) ; Kalhor, Hamid Reza (Co-Supervisor)
    Abstract
    The main purpose of this Ph.D. Thesis is to develop DNA-based biosensors using Label-free approaches applying simple, inexpensive and fast electrochemical techniques to measure the biological markers of cancer.In the first part, a simple protocol for detection of specific-sequence DNA is introduced. In this method carbon nanotube is used as a hybridization indicator. This label-free system provides the advantage of eliminating additional labeling procedure. As the signal enhances in the presence of MWCNT and decreases in the presence of target, the fabricated sensor is known as a signal-off device. The oxidation signal of Fe(CN)63-/4- is followed as an analytical signal to detect target... 

    Network vulnerability analysis through vulnerability take-grant model (VTG)

    , Article 7th International Conference on Information and Communications Security, ICICS 2005, Beijing, 10 December 2005 through 13 December 2005 ; Volume 3783 LNCS , 2005 , Pages 256-268 ; 03029743 (ISSN); 3540309349 (ISBN); 9783540309345 (ISBN) Shahriari, H. R ; Sadoddin, R ; Jalili, R ; Zakeri, R ; Omidian, A. R ; Sharif University of Technology
    2005
    Abstract
    Modeling and analysis of information system vulnerabilities helps us to predict possible attacks to networks using the network configuration and vulnerabilities information. As a fact, exploiting most of vulnerabilities result in access rights alteration. In this paper, we propose a new vulnerability analysis method based on the Take-Grant protection model. We extend the initial Take-Grant model to address the notion of vulnerabilities and introduce the vulnerabilities rewriting rules to specify how the protection state of the system can be changed by exploiting vulnerabilities. Our analysis is based on a bounded polynomial algorithm, which generates the closure of the Take-Grant graph... 

    Sequence dependence of the binding energy in chaperone-driven polymer translocation through a nanopore

    , Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 83, Issue 1 , January , 2011 ; 15393755 (ISSN) Abdolvahab, R. H ; Ejtehadi, M. R ; Metzler, R ; Sharif University of Technology
    2011
    Abstract
    We study the translocation of stiff polymers through a nanopore, driven by the chemical-potential gradient exerted by binding proteins (chaperones) on the trans side of the pore. Bound chaperones prevent backsliding through the pore and, therefore, partially rectify the polymer passage. We show that the sequence of chain monomers with different binding affinity for the chaperones significantly affects the translocation dynamics. In particular, we investigate the effect of the nearest-neighbor adjacency probability of the two monomer types. Depending on the magnitude of the involved binding energies, the translocation speed may either increase or decrease with the adjacency probability. We... 

    First passage time distribution of chaperone driven polymer translocation through a nanopore: Homopolymer and heteropolymer cases

    , Article Journal of Chemical Physics ; Volume 135, Issue 24 , 2011 ; 00219606 (ISSN) Abdolvahab, R. H ; Metzler, R ; Ejtehadi, M. R ; Sharif University of Technology
    2011
    Abstract
    Combining the advection-diffusion equation approach with Monte Carlo simulations we study chaperone driven polymer translocation of a stiff polymer through a nanopore. We demonstrate that the probability density function of first passage times across the pore depends solely on the Péclet number, a dimensionless parameter comparing drift strength and diffusivity. Moreover it is shown that the characteristic exponent in the power-law dependence of the translocation time on the chain length, a function of the chaperone-polymer binding energy, the chaperone concentration, and the chain length, is also effectively determined by the Péclet number. We investigate the effect of the chaperone size on... 

    Reply: Abedpour, asgari, and tabar

    , Article Physical Review Letters ; Volume 106, Issue 20 , 2011 ; 00319007 (ISSN) Abedpour, N ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
    2011

    Irreversibility in response to forces acting on graphene sheets

    , Article Physical Review Letters ; Volume 104, Issue 19 , May , 2010 ; 00319007 (ISSN) Abedpour, N ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
    2010
    Abstract
    The amount of rippling in graphene sheets is related to the interactions with the substrate or with the suspending structure. Here, we report on an irreversibility in the response to forces that act on suspended graphene sheets. This may explain why one always observes a ripple structure on suspended graphene. We show that a compression-relaxation mechanism produces static ripples on graphene sheets and determine a peculiar temperature Tc, such that for T

    Analysis of design goals of cryptography algorithms based on different components

    , Article Indonesian Journal of Electrical Engineering and Computer Science ; Volume 23, Issue 1 , 2021 , Pages 540-548 ; 25024752 (ISSN) Molk, A.M.N.G ; Aref, M. R ; Khorshiddoust, R. R ; Sharif University of Technology
    Institute of Advanced Engineering and Science  2021
    Abstract
    Cryptography algorithms are a fundamental part of a cryptographic system that is designed and implemented to increase information security. They are the center of attention of experts in the information technology domains. Although the cryptography algorithms are implemented to attain the goals such as confidentially, integrity, and authenticity of designing, but other matters that must be noticed by designers include speed, resource consumption, reliability, flexibility, usage type, and so on. For the useful allocation of hardware, software, and human resources, it is important to identify the role of each of the factors influencing the design of cryptographic algorithms to invest in the... 

    Conservation of statistical results under the reduction of pair-contact interactions to solvation interactions

    , Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 72, Issue 6 , 2005 ; 15393755 (ISSN) Radja, N.H ; Farzami, R. R ; Ejtehadi, M. R ; Sharif University of Technology
    2005
    Abstract
    We show that the hydrophobicity of sequences is the leading term in Miyazawa-Jernigan interactions. Being the source of additive (solvation) terms in pair-contact interactions, they were used to reduce the energy parameters while resulting in a clear vector manipulation of energy. The reduced (additive) potential performs considerably successful in predicting the statistical properties of arbitrary structures. The evaluated designabilities of the structures by both models are highly correlated. Suggesting geometrically nondegenerate vectors (structures) as proteinlike structures, the additive model is a powerful tool for protein design. Moreover, a crossing point in the log-linear diagram of... 

    Multifunctional hyperelastic structured surface for tunable and switchable transparency

    , Article Applied Sciences (Switzerland) ; Volume 11, Issue 5 , 2021 , Pages 1-11 ; 20763417 (ISSN) Mahabadi, R. K ; Goudarzi, T ; Fleury, R ; Naghdabadi, R ; Sharif University of Technology
    MDPI AG  2021
    Abstract
    We leverage the crucial hyperelastic properties of a multifunctional structured surface to optimize the reconfigurability of the electromagnetic transmission under large nonlinear mechanical deformations. This multiphysics, multifunctional, hyperelastic structured surface (HSS) offers two simultaneous intriguing functionalities; tunability and switchability. It is made of copper reso-nators and a Polydimethylsiloxane (PDMS) substrate, which is one of the most favorable deformable substrates due to its hyperelastic behavior. The proposed HSS is fabricated via an original cost-effective technique and the multiphysics functionalities are captured in both experimental tests and numerical... 

    MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments

    , Article PLoS Computational Biology ; Volume 18, Issue 6 , 2022 ; 1553734X (ISSN) Alinejad Rokny, H ; Modegh, R. G ; Rabiee, H. R ; Sarbandi, E. R ; Rezaie, N ; Tam, K. T ; Forrest, A. R. R ; Sharif University of Technology
    Public Library of Science  2022
    Abstract
    Hi-C is a genome-wide chromosome conformation capture technology that detects interactions between pairs of genomic regions and exploits higher order chromatin structures. Conceptually Hi-C data counts interaction frequencies between every position in the genome and every other position. Biologically functional interactions are expected to occur more frequently than transient background and artefactual interactions. To identify biologically relevant interactions, several background models that take biases such as distance, GC content and mappability into account have been proposed. Here we introduce MaxHiC, a background correction tool that deals with these complex biases and robustly... 

    SER of M-PSK modulation in incremental-selective decode-and-forward cooperative communications over Rayleigh fading channels

    , Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 432-437 ; 17389445 (ISSN) ; 9788955191554 (ISBN) Renani, R. A ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
    2011
    Abstract
    In this paper we consider a cooperative communication systems over Rayleigh fading channels. The system utilizes a combination of incremental and selective decode-and-forward (ISDF) relaying protocols. The symbol error rate (SER) of M-PSK modulation for the ISDF protocol is derived. Using an approximation of the SER expression, the optimal power allocation is investigated. In order to reduce the complexity of the receiver, we used a modified version of the ISDF protocol which does not use the storage or retransmission of the first phase signal. We also derived optimal power allocation coefficient for modified ISDF. It has been noted that for the optimal power allocation in the ISDF protocol,... 

    Power allocation for incremental-selective decode-and-forward cooperative communications over Rician fading channels

    , Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 730-734 ; 17389445 (ISSN) ; 9788955191554 (ISBN) Renani, R. A ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
    2011
    Abstract
    In this paper we consider a relaying communication system over Rician fading channels. In this system we assume simple Incremental-Selective Decode-and-Forward (ISDF) protocol, which is jointly combining incremental and selective DF relaying protocols. In this protocol, storage or retransmission of the first phase signal are not allowed. We analyze the symbol error rate (SER) performance of the recommended protocol with M-PSK modulation. We evaluate the performance of the protocol in the frequency nonselective slow Rician fading channels. Using the approximation of the SER expression, the optimal power allocation is investigated. Our results show that at least 50% of total power must be used...