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    Investigation of Anticancer Drug Metabolism in Saccharomyces Cerevisiae as a Drug Resistance Model

    , M.Sc. Thesis Sharif University of Technology Hamed Rahimi, Reza (Author) ; Yaghmaei, Soheila (Supervisor) ; Sardari, Soroush (Supervisor)
    Abstract
    Cancer is a life-threatening group of diseases that arises from the uncontrolled growth and division of cells in the body. Treatment options for cancer include surgery, chemotherapy, radiation therapy, immunotherapy, targeted therapy, and hormone therapy. However, resistance to anticancer drugs can develop through a variety of mechanisms, such as the upregulation of drug efflux pumps and alterations in DNA repair mechanisms. One common mechanism of drug resistance is through changes in metabolism, where cancer cells switch to alternative metabolic pathways to survive and evade the effects of anticancer drugs. The development of new drugs targeting specific molecules and pathways involved in... 

    Metabolic Engineering of Yeast Saccharomyces Cerevisiae for Production of Fatty Acids and Its Derivatives

    , M.Sc. Thesis Sharif University of Technology Homayoonfar, Mohammad (Author) ; Roosta Azad, Reza (Supervisor) ; Sardari, Soroush (Supervisor)
    Abstract
    With the increasing emphasis on production of various chemicals by biotechnology industry, the establishment of optimal cell factories for the maximum production of a specific chemical product will be a serious challenge in large-scale production in this industry. Metabolic engineering is a branch of biochemical engineering that has been developed to achieve this and the approaches in it seek to address this challenge. In this study, focusing on increasing production of fatty acids by yeast cells of Saccharomyces cerevisiae, and using a combination of computational and laboratory methods to present a methodology for the optimal design of culture media. Thus, using the constraint-based... 

    Design, Expression, and Evaluation of Nanoparticle Structure Containing Malaria Vaccine Candidate Antigen by Self-assembled Peptide Nanoparticles (SAPNs) and Confirmation of its Antigenicity Using Serum of Malaria Patients

    , M.Sc. Thesis Sharif University of Technology Zahedi, Farhad (Author) ; Alemzadeh, Iran (Supervisor) ; Abouei Mehrizi, Akram (Supervisor) ; Sardari, Soroush (Co-Supervisor) ; Zakeri, Sedigheh (Co-Supervisor)
    Abstract
    Malaria is one of the most important infectious diseases in the tropical and subtropical regions of the world and is caused in humans by the bite of the female Anopheles mosquito of five species of Plasmodium. According to the World Health Organization, about 229 million people worldwide were infected in 2019 by the disease, and 409,000 people died from the disease. Resistance of the parasite against drugs and resistance of vectors to insecticides and larvicides, which prevents the elimination and eradication of malaria, shows the need for new strategies, such as having an effective vaccine against this disease. In the second generation of vaccines, to develop malaria vaccines, recombinant... 

    Aerodynamic Analysis and Design of a Propeller for Light Flying Objects

    , M.Sc. Thesis Sharif University of Technology Sardari, Ali (Author) ; Farhanieh, Bijan (Supervisor)
    Abstract
    One of the major concerns in the use of light flying objects is propulsion for cruise and take off from land. Creating propulsion force is important in such way that no excessive weight is introduced, especially in case of UAVs. A common trend for propulsion in light flying objects is using propellers. Propellers are commonly driven by an external motive force and due to this force and their geometry, they convert energy from this motive force into the momentum of fluid in which they are immersed as a result a lift force is generated.In the present work, trend of propeller design with optimum performance is introduced with use of vortex theory, optimum energy loss condition or Betz condition... 

    BRST quantization of noncommutative gauge theories

    , Article Physical Review D ; Volume 68, Issue 10 , 2003 ; 05562821 (ISSN) Soroush, M ; Sharif University of Technology
    American Physical Society  2003
    Abstract
    In this paper, the Becchi-Rouet-Stora-Tyutin (BRST) symmetry transformation is presented for the noncommutative U(N) gauge theory. The nilpotency of the charge associated with this symmetry is then proved. As a consequence of the spacelike noncommutativity parameter, the Hubert space of physical states is determined by the cohomology space of the BRST operator as in the commutative case. Further, the unitarity of the S-matrix elements projected onto the subspace of the physical states is deduced. © 2003 The American Physical Society  

    BRST quantization of noncommutative gauge theories

    , Article Physical Review D - Particles, Fields, Gravitation and Cosmology ; Volume 67, Issue 10 , 2003 ; 15507998 (ISSN) Soroush, M ; Sharif University of Technology
    2003
    Abstract
    In this paper, the Becchi-Rouet-Stora-Tyutin (BRST) symmetry transformation is presented for the noncommutative [Formula Presented] gauge theory. The nilpotency of the charge associated with this symmetry is then proved. As a consequence of the spacelike noncommutativity parameter, the Hilbert space of physical states is determined by the cohomology space of the BRST operator as in the commutative case. Further, the unitarity of the S-matrix elements projected onto the subspace of the physical states is deduced. © 2003 The American Physical Society  

    Unsteady Analysis of a Slinger Combustion Chamber by the Chemical Reactor Network Model

    , M.Sc. Thesis Sharif University of Technology Soroush, Fariborz (Author) ; Farshchi, Mohammad (Supervisor)
    Abstract
    Up to early seventies, Gas turbine combustor design was very time consuming and costly process including trial and errors through test rigs. Over the time analytical-experimental relationships take place as one of the key rules in the design processes. With the increasing power of computer calculations, computational fluid dynamics find its way in the procedure. Obtaining a deeper understanding of flow conditions and geometry inside the chamber, a great reduction in production time and cost of revisions to rigs and samples were achieved. Finding a precise prediction of polluting elements like NOx (less than 10 ppm) after many run hours and enormous computing resources, CFD methods must... 

    Workspace measurement of the surgeon's upper limb during an arthroscopy and three laparoscopy operations using inertial sensor systems

    , Article 2013 E-Health and Bioengineering Conference, EHB 2013 ; 2013 ; 9781479923731 (ISBN) Soroush, A ; Farahmand, F ; Sharif University of Technology
    2013
    Abstract
    The aim of this study was to determine the workspace of surgeon's body for designing more efficient surgical robots in the operation rooms. Five wearable inertial sensors were placed near the wrist and elbow joints and also on the thorax of surgeons to track the orientation of upper limb. Assuming that the lengths of five segments of an upper limb were known, measurements of the inertial sensors were used to determine the position of the wrist and elbow joints via an established kinematic model. subsequently, to assess the workspace of surgeon upper body, raw data were collected in the arthroscopy and laparoscopy operations. Experimental results demonstrated that the workspaces of surgeon's... 

    Modeling and Simulation of Alcoholic Fermentation of Sugarcane Blackstrap Molasses

    , M.Sc. Thesis Sharif University of Technology Soroush, Mohammad (Author) ; Yaghmaee, Sohila (Supervisor)
    Abstract
    Fed-batch fermentation is a valuable and cost-effective method for bio-based production of various products such as ethanol, which has various applications in various industries.In recent years, bioethanol production has been given special attention in many countries. For this reason, the mathematical modeling of production of these products is very important for their optimal and cost-effective production. Given the transient and dynamic nature of fermentation and its specific complexity, mathematical modeling of fed-batch bioreactors is difficult and complicated. In this research, an unstructured model was used to predict the production of ethanol from blackstrap sugar cane molasses based... 

    Effect of capillary tube's shape on capillary rising regime for viscos fluids

    , Article 2017 International Conference on Nanomaterials and Biomaterials, ICNB 2017, 11 December 2017 through 13 December 2017 ; Volume 350, Issue 1 , 2018 ; 17578981 (ISSN) Soroush, F ; Moosavi, A ; Sharif University of Technology
    Institute of Physics Publishing  2018
    Abstract
    When properties of the displacing fluid are considered, the rising profile of the penetrating fluid in a capillary tube deviates from its classical Lucas-Washburn profile. Also, shape of capillary tube can affect the rising profile in different aspects. In this article, effect of capillary tube's shape on the vertical capillary motion in presence of gravity is investigated by considering the properties of the displacing fluid. According to the fact that the differential equation of the capillary rising for a non-simple wall type is very difficult to solve analytically, a finite element simulation model is used for this study. After validation of the simulation model with an experiment that... 

    Analytical methods in fatty acid analysis for microbial applications: the recent trends

    , Article Preparative Biochemistry and Biotechnology ; Volume 51, Issue 10 , 2021 , Pages 937-952 ; 10826068 (ISSN) Homayoonfar, M ; Roosta Azad, R ; Sardari, S ; Sharif University of Technology
    Taylor and Francis Ltd  2021
    Abstract
    Fatty acids are among the most important components of many biological systems and have been highlighted in many research fields in recent decades. In the food industry, it is important to check the amount and types of fatty acids in edible oils, beverages and other foods products, and checking the fatty acids parameters are among the quality control parameters for those products. In medical applications, investigation of fatty acids in biological samples and comparing imbalances in them can help to diagnose some diseases. On the other hand, the development of cell factories for the production of biofuels and other valuable chemicals requires the accurate analysis of fatty acids, which serve... 

    Detection of change to SSVEPs using analysis of phase space topological : a novel approach

    , Article Neurophysiology ; Volume 51, Issue 3 , 2019 , Pages 180-190 ; 00902977 (ISSN) Soroush, M. Z ; Maghooli, K ; Pisheh, N. F ; Mohammadi, M ; Soroush, P. Z ; Tahvilian, P ; Sharif University of Technology
    Springer New York LLC  2019
    Abstract
    A novel method based on EEG nonlinear analysis and analysis of steady-state visual evoked potentials (SSVEPs) has been processed. The EEG phase space is reconstructed, and some new geometrical features are extracted. Statistical analysis is carried out based on ANOVA, and most significant features are selected and then fed into a multi-class support vector machine (MSVM). Both offline and online phases are considered to fully address SSVEP detection. In the offline mode, the whole design evaluation, feature selection, and classifier training are performed. In the online scenario, the proposed method is evaluated and the detection rate is reported for both phases. Subject-dependent and... 

    Design and development of a self-assembling protein nanoparticle displaying PfHAP2 antigenic determinants recognized by natural acquired antibodies

    , Article PLoS ONE ; Volume 17, Issue 9 September , 2022 ; 19326203 (ISSN) Zahedi, F ; Mehrizi, A. A ; Sardari, S ; Alemzadeh, I ; Sharif University of Technology
    Public Library of Science  2022
    Abstract
    Backgrounds In order to move towards the elimination and eradication of malaria in the world, the development of vaccines is inevitable. Many modern vaccines are based on recombinant technology; however, they may not provide a fully protective, long-lasting immune response. One of the strategies to improve recombinant vaccines is designing the nanovaccines such as self-assembling protein nanoparticles (SAPNs). Hence, the presentation of epitopes in a repeat array and correct conformation should be considered. P. falciparum generative cell-specific 1 (PfGCS1) is a main transmission-blocking vaccine candidate with two highly conserved fragments, HAP2-GCS1 and cd loop, inducing partial malaria... 

    How to synchronize and register an optical-inertial tracking system

    , Article Applied Mechanics and Materials ; Volume 332 , 2013 , Pages 130-136 ; 16609336 (ISSN) ; 9783037857335 (ISBN) Soroush, A ; Akbar, M ; Farahmand, F ; Sharif University of Technology
    2013
    Abstract
    Multi-sensor tracking is widely used for augmentation of tracking accuracy using data fusion. A basic requirement for such applications is the real time temporal synchronization and spatial registration of two sensory data. In this study a new method for time and space coordination of two tracking sensor measurements has been presented. For spatial registration we used a body coordinate system and then applied the effect of the level arm. The time synchronization was done based on least mean square (LMS) error method. This method was implemented to synchronize the position and orientation of an object using Inertial (1IMU) and Optical (Optotrak) tracking systems. The results of synchronized... 

    Design and implementation of an improved real-time tracking system for navigation surgery by fusion of optical and inertial tracking methods

    , Article Applied Mechanics and Materials ; Volume 186 , 2012 , Pages 273-279 ; 16609336 (ISSN) ; 9783037854440 (ISBN) Soroush, A ; Farahmand, F ; Salarieh, H ; Sharif University of Technology
    2012
    Abstract
    The fusion of the optical and inertial tracking systems seems an attractive solution to solve the shadowing problem of the optical tracking systems, and remove the time integration troubles of the inertial sensors. We developed a fusion algorithm for this purpose, based on the Kalman filter, and examined its efficacy to improve the position and orientation data, obtained by each individual system. Experimental results indicated that the proposed fusion algorithm could effectively estimate the 2 seconds missing data of the optical tracker  

    A non-user-based BCI application for robot control

    , Article 2018 IEEE EMBS Conference on Biomedical Engineering and Sciences, IECBES 2018, 3 December 2018 through 6 December 2018 ; 2019 , Pages 36-41 ; 9781538624715 (ISBN) Zanganeh Soroush, P ; Shamsollahi, M. B ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2019
    Abstract
    Steady State Visual Evoked Potential (SSVEP) based Brain Computer Interfaces (BCI) can be great assistance for people suffering from physical disabilities due to their high accuracy, high speed, an acceptable number of possible targets, etc. Many researchers have managed to design such systems. Most of these BCIs utilize methods for frequency detection which cause the system to need a training phase for each new user, making the system a user-based one. That is why our goal was to design a BCI that not only has accuracy and speed comparable to similar systems, but also does not need any training phase and thus can be used by new users right away. Our final design got a mean accuracy of... 

    Investigation on Seismic Performance of Eccentrically Braced Frames with Vertical Post-tensioned Cables

    , M.Sc. Thesis Sharif University of Technology Goodarzi Soroush, Adel (Author) ; Kazemi, Mohammad Taghi (Supervisor)
    Abstract
    Although the moment frame can show deformable behavior against seismic loads, but its flexibility and low stiffness, especially in tall structures, cause the governance criterion to be designed. The use of eccentrically braced frames was able to solve the displacement problem to some extent, because it has the characteristics of both flexural frame systems and conccentric bracing. Different methods have been proposed to eliminate residual displacements in this type of system, one of which is the use of post tensioned cables. The aim of this study was to investigate the seismic behavior of a steel structure with a eccentrically braced frame system with post tension cable.The cables are anchor... 

    Induction of fuzzy classification systems using evolutionary ACO-Based algorithms

    , Article 1st Asia International Conference on Modelling and Simulation - Asia Modelling Symposium 2007, AMS 2007, 27 March 2007 through 30 March 2007 ; 2007 , Pages 346-351 ; 0769528457 (ISBN); 9780769528458 (ISBN) Abadeh, M. S ; Habibi, J ; Soroush, E ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2007
    Abstract
    In this paper we have proposed an evolutionary algorithm to induct fuzzy classification rules. The algorithm uses an ant colony optimization based local searcher to improve the quality of final fuzzy classification system. The proposed algorithm is performed on Intrusion Detection as a high-dimensional classification problem. Results show that the implemented evolutionary ACO-Based algorithm is capable of producing a reliable fuzzy rule based classifier for intrusion detection. © 2007 IEEE  

    Effects of COVID-19-related psychological distress and anxiety on quality of sleep and life in healthcare workers in Iran and three European countries

    , Article Frontiers in Public Health ; Volume 10 , 2022 ; 22962565 (ISSN) Zangeneh Soroush, M ; Tahvilian, P ; Koohestani, S ; Maghooli, K ; Jafarnia Dabanloo, N ; Sarhangi Kadijani, M ; Jahantigh, S ; Zangeneh Soroush, M ; Saliani, A ; Sharif University of Technology
    Frontiers Media S.A  2022
    Abstract
    Introduction: The COVID-19 pandemic has considerably affected human beings most of whom are healthcare workers (HCWs) combating the disease in the front line. Methods: This cross-sectional study aims to explore the effects of stress and anxiety caused by COVID-19 on the quality of sleep and life in HCWs, including physicians, nurses, and other healthcare staff. In this global study, we asked 1,210 HCWs (620 and 590 volunteers from Iran and European countries, including Germany, the Netherlands, and Italy, respectively), who age 21–70, to participate in the test. Several measures of COVID-related stress, anxiety, sleep, and life quality, including the 12-item General Health Questionnaire... 

    Predicting fracture of solder joints with different constraint factors

    , Article Fatigue and Fracture of Engineering Materials and Structures ; Volume 42, Issue 2 , 2019 , Pages 425-438 ; 8756758X (ISSN) Nourani, A ; Mirmehdi, S ; Farrahi, G ; Soroush, F ; Sharif University of Technology
    Blackwell Publishing Ltd  2019
    Abstract
    Double cantilever beam (DCB) specimens of 2.5-mm-long SAC305 solder joints were prepared with thickness of copper adherends varying from 8 to 21 mm each. The specimens were tested under mode I loading conditions (ie, pure opening mode with no shear component of loading) with a strain rate of 0.03 second−1. The measured fracture load was used to calculate the critical strain energy release rate for crack initiation, Jci, in each case. Fracture behaviour showed a significant dependence on the adherend thickness; the Jci and plastic deformation of the solder at crack initiation decreased significantly with increase in adherend thickness. This behaviour was attributed to changes in stress...